Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:06:15 (1960912): wrapper (7.7.26015): starting
04:06:15 (1960912): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 04:06:15] Arguments: --nthreads 3
[2025-11-24 04:06:15] Threads: 3
[2025-11-24 04:06:15] Checking for CVMFS
[2025-11-24 04:06:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 04:06:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 04:06:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 04:06:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 04:06:16] 2.9.2.0 630443 7823 90036 153229 1 81 18475343 36864001 0 130560 0 2907021 99.918 440201 5979 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 04:06:16] CVMFS is ok
[2025-11-24 04:06:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 04:06:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 04:06:16] Further information can be found at the LHC@home message board.
[2025-11-24 04:06:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 04:06:16] Checking for apptainer binary...
[2025-11-24 04:06:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 04:06:16] Running /usr/bin/apptainer --version
[2025-11-24 04:06:16] apptainer version 1.4.1-1.1
[2025-11-24 04:06:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 04:06:16] legendA163
[2025-11-24 04:06:16] apptainer works
[2025-11-24 04:06:16] Set ATHENA_PROC_NUMBER=3
[2025-11-24 04:06:16] Set ATHENA_CORE_NUMBER=3
[2025-11-24 04:06:16] Starting ATLAS job with PandaID=6893881839
[2025-11-24 04:06:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:42:50 (2026951): wrapper (7.7.26015): starting
08:42:50 (2026951): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 08:42:50] Arguments: --nthreads 3
[2025-11-24 08:42:50] Threads: 3
[2025-11-24 08:42:50] This job has been restarted, cleaning up previous attempt
[2025-11-24 08:42:50] Checking for CVMFS
[2025-11-24 08:42:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 08:42:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 08:42:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 08:42:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 08:42:52] 2.9.2.0 2027077 0 30020 153238 3 1 18511535 36864001 0 130560 0 0 0.000 1291 43033 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 08:42:52] CVMFS is ok
[2025-11-24 08:42:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 08:42:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 08:42:52] Further information can be found at the LHC@home message board.
[2025-11-24 08:42:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 08:42:52] Checking for apptainer binary...
[2025-11-24 08:42:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 08:42:52] Running /usr/bin/apptainer --version
[2025-11-24 08:42:52] apptainer version 1.4.1-1.1
[2025-11-24 08:42:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 08:42:52] legendA163
[2025-11-24 08:42:52] apptainer works
[2025-11-24 08:42:52] Set ATHENA_PROC_NUMBER=3
[2025-11-24 08:42:52] Set ATHENA_CORE_NUMBER=3
[2025-11-24 08:42:52] Starting ATLAS job with PandaID=6893881839
[2025-11-24 08:42:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 16:53:47]  *** The last 200 lines of the pilot log: ***
[2025-11-24 16:53:47] 2025-11-24 15:53:13,119 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-24 16:53:47] 2025-11-24 15:53:13,788 | INFO     | monitor loop #2234: job 0:6893881839 is in state 'finished'
[2025-11-24 16:53:47] 2025-11-24 15:53:13,788 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 16:53:47] 2025-11-24 15:53:14,528 | INFO     | time since job start (29413s) is within the limit (172800.0s)
[2025-11-24 16:53:47] 2025-11-24 15:53:15,413 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 16:53:47] 2025-11-24 15:53:15,414 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3668.956833333334
[2025-11-24 16:53:47] 2025-11-24 15:53:15,415 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6893881839/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 16:53:47] 2025-11-24 15:53:15,416 | INFO     | extracted standard info from prmon json
[2025-11-24 16:53:47] 2025-11-24 15:53:15,416 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 16:53:47] 2025-11-24 15:53:15,416 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 16:53:47] 2025-11-24 15:53:15,418 | INFO     | fitting pss+swap vs Time
[2025-11-24 16:53:47] 2025-11-24 15:53:15,419 | INFO     | sum of square deviations: 34723034300.5
[2025-11-24 16:53:47] 2025-11-24 15:53:15,421 | INFO     | sum of deviations: 265319396208.5
[2025-11-24 16:53:47] 2025-11-24 15:53:15,421 | INFO     | mean x: 1763984871.5
[2025-11-24 16:53:47] 2025-11-24 15:53:15,421 | INFO     | mean y: 2181538.17219917
[2025-11-24 16:53:47] 2025-11-24 15:53:15,421 | INFO     | intersect: -13476461974.862291
[2025-11-24 16:53:47] 2025-11-24 15:53:15,421 | INFO     | chi2: 3.1450660412392106
[2025-11-24 16:53:47] 2025-11-24 15:53:15,421 | INFO     | sum of square deviations: 33653609598.0
[2025-11-24 16:53:47] 2025-11-24 15:53:15,423 | INFO     | sum of deviations: 317712737634.99994
[2025-11-24 16:53:47] 2025-11-24 15:53:15,423 | INFO     | mean x: 1763984719.0
[2025-11-24 16:53:47] 2025-11-24 15:53:15,423 | INFO     | mean y: 2188979.394129979
[2025-11-24 16:53:47] 2025-11-24 15:53:15,423 | INFO     | intersect: -16651014671.399467
[2025-11-24 16:53:47] 2025-11-24 15:53:15,424 | INFO     | chi2: 2.201958855570287
[2025-11-24 16:53:47] 2025-11-24 15:53:15,424 | INFO     | current chi2=2.201958855570287 (change=29.98688018955949 %)
[2025-11-24 16:53:47] 2025-11-24 15:53:15,424 | INFO     | sum of square deviations: 32606371358.0
[2025-11-24 16:53:47] 2025-11-24 15:53:15,426 | INFO     | sum of deviations: 312880319739.49994
[2025-11-24 16:53:47] 2025-11-24 15:53:15,426 | INFO     | mean x: 1763984566.5
[2025-11-24 16:53:47] 2025-11-24 15:53:15,426 | INFO     | mean y: 2188275.7055084747
[2025-11-24 16:53:47] 2025-11-24 15:53:15,426 | INFO     | intersect: -16924443919.037317
[2025-11-24 16:53:47] 2025-11-24 15:53:15,426 | INFO     | chi2: 2.1995388791724086
[2025-11-24 16:53:47] 2025-11-24 15:53:15,426 | INFO     | current chi2=2.1995388791724086 (change=0.10990107248173467 %)
[2025-11-24 16:53:47] 2025-11-24 15:53:15,426 | INFO     | right removable region: 471
[2025-11-24 16:53:47] 2025-11-24 15:53:15,426 | INFO     | sum of square deviations: 33653609598.0
[2025-11-24 16:53:47] 2025-11-24 15:53:15,428 | INFO     | sum of deviations: 167167963924.99997
[2025-11-24 16:53:47] 2025-11-24 15:53:15,428 | INFO     | mean x: 1763985024.0
[2025-11-24 16:53:47] 2025-11-24 15:53:15,428 | INFO     | mean y: 2195513.6247379454
[2025-11-24 16:53:47] 2025-11-24 15:53:15,428 | INFO     | intersect: -8760067684.252161
[2025-11-24 16:53:47] 2025-11-24 15:53:15,428 | INFO     | chi2: 1.1375607083959018
[2025-11-24 16:53:47] 2025-11-24 15:53:15,428 | INFO     | current chi2=1.1375607083959018 (change=63.83030774299151 %)
[2025-11-24 16:53:47] 2025-11-24 15:53:15,428 | INFO     | sum of square deviations: 32606371358.0
[2025-11-24 16:53:47] 2025-11-24 15:53:15,430 | INFO     | sum of deviations: 145378821478.49997
[2025-11-24 16:53:47] 2025-11-24 15:53:15,430 | INFO     | mean x: 1763985176.5
[2025-11-24 16:53:47] 2025-11-24 15:53:15,431 | INFO     | mean y: 2198672.438559322
[2025-11-24 16:53:47] 2025-11-24 15:53:15,431 | INFO     | intersect: -7862708564.539054
[2025-11-24 16:53:47] 2025-11-24 15:53:15,431 | INFO     | chi2: 0.9934420464030851
[2025-11-24 16:53:47] 2025-11-24 15:53:15,431 | INFO     | current chi2=0.9934420464030851 (change=12.6690963329809 %)
[2025-11-24 16:53:47] 2025-11-24 15:53:15,431 | INFO     | left removable region: 20
[2025-11-24 16:53:47] 2025-11-24 15:53:15,431 | INFO     | sum of square deviations: 28444998450.0
[2025-11-24 16:53:47] 2025-11-24 15:53:15,433 | INFO     | sum of deviations: 181888269082.99997
[2025-11-24 16:53:47] 2025-11-24 15:53:15,433 | INFO     | mean x: 1763985146.0
[2025-11-24 16:53:47] 2025-11-24 15:53:15,433 | INFO     | mean y: 2207690.740576497
[2025-11-24 16:53:47] 2025-11-24 15:53:15,433 | INFO     | intersect: -11277392322.528645
[2025-11-24 16:53:47] 2025-11-24 15:53:15,433 | INFO     | chi2: 0.04359121467423028
[2025-11-24 16:53:47] 2025-11-24 15:53:15,433 | INFO     | current memory leak: 6.39 B/s (using 451 data points, chi2=0.04)
[2025-11-24 16:53:47] 2025-11-24 15:53:15,434 | INFO     | could have reported an average CPU frequency of 3942 MHz (20 samples)
[2025-11-24 16:53:47] 2025-11-24 15:53:15,434 | INFO     | ..............................
[2025-11-24 16:53:47] 2025-11-24 15:53:15,434 | INFO     | . Timing measurements:
[2025-11-24 16:53:47] 2025-11-24 15:53:15,434 | INFO     | . get job = 0 s
[2025-11-24 16:53:47] 2025-11-24 15:53:15,434 | INFO     | . initial setup = 0 s
[2025-11-24 16:53:47] 2025-11-24 15:53:15,434 | INFO     | . payload setup = 3 s
[2025-11-24 16:53:47] 2025-11-24 15:53:15,434 | INFO     | . stage-in = 0 s
[2025-11-24 16:53:47] 2025-11-24 15:53:15,434 | INFO     | . payload execution = 29390 s
[2025-11-24 16:53:47] 2025-11-24 15:53:15,434 | INFO     | . stage-out = 1 s
[2025-11-24 16:53:47] 2025-11-24 15:53:15,434 | INFO     | . log creation = 0 s
[2025-11-24 16:53:47] 2025-11-24 15:53:15,434 | INFO     | ..............................
[2025-11-24 16:53:47] 2025-11-24 15:53:15,464 | INFO     | 
[2025-11-24 16:53:47] 2025-11-24 15:53:15,464 | INFO     | job summary report
[2025-11-24 16:53:47] 2025-11-24 15:53:15,464 | INFO     | --------------------------------------------------
[2025-11-24 16:53:47] 2025-11-24 15:53:15,464 | INFO     | PanDA job id: 6893881839
[2025-11-24 16:53:47] 2025-11-24 15:53:15,464 | INFO     | task id: 47523449
[2025-11-24 16:53:47] 2025-11-24 15:53:15,464 | INFO     | errors: (none)
[2025-11-24 16:53:47] 2025-11-24 15:53:15,464 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 16:53:47] 2025-11-24 15:53:15,465 | INFO     | pilot state: finished 
[2025-11-24 16:53:47] 2025-11-24 15:53:15,465 | INFO     | transexitcode: 0
[2025-11-24 16:53:47] 2025-11-24 15:53:15,465 | INFO     | exeerrorcode: 0
[2025-11-24 16:53:47] 2025-11-24 15:53:15,465 | INFO     | exeerrordiag: 
[2025-11-24 16:53:47] 2025-11-24 15:53:15,465 | INFO     | exitcode: 0
[2025-11-24 16:53:47] 2025-11-24 15:53:15,465 | INFO     | exitmsg: OK
[2025-11-24 16:53:47] 2025-11-24 15:53:15,465 | INFO     | cpuconsumptiontime: 86699 s
[2025-11-24 16:53:47] 2025-11-24 15:53:15,465 | INFO     | nevents: 1000
[2025-11-24 16:53:47] 2025-11-24 15:53:15,465 | INFO     | neventsw: 0
[2025-11-24 16:53:47] 2025-11-24 15:53:15,465 | INFO     | pid: 2037769
[2025-11-24 16:53:47] 2025-11-24 15:53:15,465 | INFO     | pgrp: 2037769
[2025-11-24 16:53:47] 2025-11-24 15:53:15,465 | INFO     | corecount: 3
[2025-11-24 16:53:47] 2025-11-24 15:53:15,465 | INFO     | event service: False
[2025-11-24 16:53:47] 2025-11-24 15:53:15,465 | INFO     | sizes: {0: 2298525, 1: 2298780, 3: 2299042, 11: 2299070, 29396: 2338168, 29397: 2348143, 29401: 2348333}
[2025-11-24 16:53:47] 2025-11-24 15:53:15,465 | INFO     | --------------------------------------------------
[2025-11-24 16:53:47] 2025-11-24 15:53:15,465 | INFO     | 
[2025-11-24 16:53:47] 2025-11-24 15:53:15,465 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-24 16:53:47] 2025-11-24 15:53:15,477 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,477 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,477 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,477 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,477 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,477 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,477 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,477 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,477 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,477 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,477 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,477 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,477 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,477 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,477 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,477 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,477 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,478 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 16:53:47] 2025-11-24 15:53:15,478 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,478 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 16:53:47] 2025-11-24 15:53:15,478 | INFO     | job 6893881839 has completed (purged errors)
[2025-11-24 16:53:47] 2025-11-24 15:53:15,478 | INFO     | overall cleanup function is called
[2025-11-24 16:53:47] 2025-11-24 15:53:16,486 | INFO     | --- collectZombieJob: --- 10, [2037769]
[2025-11-24 16:53:47] 2025-11-24 15:53:16,486 | INFO     | zombie collector waiting for pid 2037769
[2025-11-24 16:53:47] 2025-11-24 15:53:16,486 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 16:53:47] 2025-11-24 15:53:16,486 | INFO     | collected zombie processes
[2025-11-24 16:53:47] 2025-11-24 15:53:16,486 | INFO     | will attempt to kill all subprocesses of pid=2037769
[2025-11-24 16:53:47] 2025-11-24 15:53:16,541 | INFO     | process IDs to be killed: [2037769] (in reverse order)
[2025-11-24 16:53:47] 2025-11-24 15:53:16,568 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 16:53:47] 2025-11-24 15:53:16,569 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 16:53:47] 2025-11-24 15:53:16,571 | INFO     | did not find any defunct processes belonging to 2037769
[2025-11-24 16:53:47] 2025-11-24 15:53:16,572 | INFO     | did not find any defunct processes belonging to 2037769
[2025-11-24 16:53:47] 2025-11-24 15:53:16,573 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 16:53:47] 2025-11-24 15:53:16,573 | INFO     | ready for new job
[2025-11-24 16:53:47] 2025-11-24 15:53:16,573 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 16:53:47] 2025-11-24 15:53:16,574 | INFO     | ***************************************
[2025-11-24 16:53:47] 2025-11-24 15:53:16,574 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 16:53:47] 2025-11-24 15:53:16,574 | INFO     | ***************************************
[2025-11-24 16:53:47] 2025-11-24 15:53:16,574 | INFO     | 
[2025-11-24 16:53:47] 2025-11-24 15:53:16,574 | INFO     | architecture information:
[2025-11-24 16:53:47] 2025-11-24 15:53:16,575 | INFO     | executing command: cat /etc/os-release
[2025-11-24 16:53:47] 2025-11-24 15:53:16,583 | INFO     | cat /etc/os-release:
[2025-11-24 16:53:47] NAME="CentOS Linux"
[2025-11-24 16:53:47] VERSION="7 (Core)"
[2025-11-24 16:53:47] ID="centos"
[2025-11-24 16:53:47] ID_LIKE="rhel fedora"
[2025-11-24 16:53:47] VERSION_ID="7"
[2025-11-24 16:53:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 16:53:47] ANSI_COLOR="0;31"
[2025-11-24 16:53:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 16:53:47] HOME_URL="https://www.centos.org/"
[2025-11-24 16:53:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 16:53:47] 
[2025-11-24 16:53:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 16:53:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 16:53:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 16:53:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 16:53:47] 
[2025-11-24 16:53:47] 2025-11-24 15:53:16,583 | INFO     | ***************************************
[2025-11-24 16:53:47] 2025-11-24 15:53:17,086 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 16:53:47] 2025-11-24 15:53:17,099 | INFO     | sufficient remaining disk space (383451660288 B)
[2025-11-24 16:53:47] 2025-11-24 15:53:17,100 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 16:53:47] 2025-11-24 15:53:17,100 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 16:53:47] 2025-11-24 15:53:17,100 | INFO     | update_server=False
[2025-11-24 16:53:47] 2025-11-24 15:53:17,100 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 16:53:47] 2025-11-24 15:53:17,100 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 16:53:47] 2025-11-24 15:53:17,297 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 16:53:47] 2025-11-24 15:53:17,297 | INFO     | aborting loop
[2025-11-24 16:53:47] 2025-11-24 15:53:17,502 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 16:53:47] 2025-11-24 15:53:17,547 | INFO     | all job control threads have been joined
[2025-11-24 16:53:47] 2025-11-24 15:53:17,646 | INFO     | all payload control threads have been joined
[2025-11-24 16:53:47] 2025-11-24 15:53:17,720 | INFO     | all data control threads have been joined
[2025-11-24 16:53:47] 2025-11-24 15:53:18,026 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 16:53:47] 2025-11-24 15:53:18,105 | INFO     | [job] queue monitor thread has finished
[2025-11-24 16:53:47] 2025-11-24 15:53:18,105 | INFO     | [job] retrieve thread has finished
[2025-11-24 16:53:47] 2025-11-24 15:53:18,187 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 16:53:47] 2025-11-24 15:53:18,303 | INFO     | [job] job monitor thread has finished
[2025-11-24 16:53:47] 2025-11-24 15:53:18,335 | INFO     | [payload] validate_post thread has finished
[2025-11-24 16:53:47] 2025-11-24 15:53:18,553 | INFO     | [job] control thread has finished
[2025-11-24 16:53:47] 2025-11-24 15:53:18,648 | INFO     | [payload] control thread has finished
[2025-11-24 16:53:47] 2025-11-24 15:53:18,726 | INFO     | [data] control thread has finished
[2025-11-24 16:53:47] 2025-11-24 15:53:18,974 | INFO     | [data] copytool_in thread has finished
[2025-11-24 16:53:47] 2025-11-24 15:53:19,170 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 16:53:47] 2025-11-24 15:53:19,181 | INFO     | [job] validate thread has finished
[2025-11-24 16:53:47] 2025-11-24 15:53:19,282 | INFO     | [payload] failed_post thread has finished
[2025-11-24 16:53:47] 2025-11-24 15:53:19,408 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 16:53:47] 2025-11-24 15:53:19,445 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 16:53:47] 2025-11-24 15:53:19,508 | INFO     | [data] copytool_out thread has finished
[2025-11-24 16:53:47] 2025-11-24 15:53:22,033 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 16:53:47] 2025-11-24 15:53:34,761 | INFO     | [monitor] cgroup control has ended
[2025-11-24 16:53:47] 2025-11-24 15:53:36,676 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139948011468608)>', '<ExcThread(monitor, started 139947507951360)>']
[2025-11-24 16:53:47] 2025-11-24 15:53:41,701 | INFO     | all workflow threads have been joined
[2025-11-24 16:53:47] 2025-11-24 15:53:41,701 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 16:53:47] 2025-11-24 15:53:41,702 | INFO     | traces error code: 0
[2025-11-24 16:53:47] 2025-11-24 15:53:41,702 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 16:53:47] 2025-11-24 15:53:47,656 | INFO     | PID=2031236 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 16:53:47] 2025-11-24 15:53:47,656 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 16:53:47] 2025-11-24 15:53:47,656 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 16:53:47] 2025-11-24 15:53:47,656 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 16:53:47] 2025-11-24 15:53:47,656 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 16:53:47] 2025-11-24 15:53:47,656 | INFO     | [monitor] control thread has ended
[2025-11-24 16:53:47] 2025-11-24 15:53:47,703 [wrapper] ==== pilot stdout END ====
[2025-11-24 16:53:47] 2025-11-24 15:53:47,706 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 16:53:47] 2025-11-24 15:53:47,708 [wrapper] pilotpid: 2031236
[2025-11-24 16:53:47] 2025-11-24 15:53:47,710 [wrapper] Pilot exit status: 0
[2025-11-24 16:53:47] 2025-11-24 15:53:47,717 [wrapper] pandaids: 6893881839 6893881839
[2025-11-24 16:53:47] 2025-11-24 15:53:47,735 [wrapper] cleanup supervisor_pilot 2224364 2031237
[2025-11-24 16:53:47] 2025-11-24 15:53:47,737 [wrapper] Test setup, not cleaning
[2025-11-24 16:53:47] 2025-11-24 15:53:47,740 [wrapper] apfmon messages muted
[2025-11-24 16:53:47] 2025-11-24 15:53:47,742 [wrapper] ==== wrapper stdout END ====
[2025-11-24 16:53:47] 2025-11-24 15:53:47,744 [wrapper] ==== wrapper stderr END ====
[2025-11-24 16:53:47]  *** Error codes and diagnostics ***
[2025-11-24 16:53:47]     "exeErrorCode": 0,
[2025-11-24 16:53:47]     "exeErrorDiag": "",
[2025-11-24 16:53:47]     "pilotErrorCode": 0,
[2025-11-24 16:53:47]     "pilotErrorDiag": "",
[2025-11-24 16:53:47]  *** Listing of results directory ***
[2025-11-24 16:53:47] total 1708864
[2025-11-24 16:53:47] drwx------ 5 boinc boinc      4096 Nov  5 18:16 pilot3
[2025-11-24 16:53:47] -rw-r--r-- 1 boinc boinc    576529 Nov 20 21:07 pilot3.tar.gz
[2025-11-24 16:53:47] -rwx------ 1 boinc boinc     36292 Nov 20 21:21 runpilot2-wrapper.sh
[2025-11-24 16:53:47] -rw-r--r-- 1 boinc boinc      5112 Nov 20 21:21 queuedata.json
[2025-11-24 16:53:47] -rw-r--r-- 1 boinc boinc       100 Nov 24 04:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 16:53:47] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 04:06 run_atlas
[2025-11-24 16:53:47] -rw-r--r-- 1 boinc boinc       105 Nov 24 04:06 job.xml
[2025-11-24 16:53:47] -rw-r--r-- 3 boinc boinc 411089457 Nov 24 04:06 EVNT.47493127._000876.pool.root.1
[2025-11-24 16:53:47] -rw-r--r-- 3 boinc boinc 411089457 Nov 24 04:06 ATLAS.root_0
[2025-11-24 16:53:47] -rw-r--r-- 2 boinc boinc    590101 Nov 24 04:06 input.tar.gz
[2025-11-24 16:53:47] -rw-r--r-- 2 boinc boinc     15847 Nov 24 04:06 start_atlas.sh
[2025-11-24 16:53:47] drwxrwx--x 2 boinc boinc      4096 Nov 24 04:06 shared
[2025-11-24 16:53:47] -rw-r--r-- 1 boinc boinc         0 Nov 24 04:06 boinc_setup_complete
[2025-11-24 16:53:47] -rw-r--r-- 1 boinc boinc         0 Nov 24 04:06 boinc_lockfile
[2025-11-24 16:53:47] -rw-r--r-- 1 boinc boinc      6458 Nov 24 08:42 init_data.xml
[2025-11-24 16:53:47] -rw-r--r-- 1 boinc boinc      2781 Nov 24 08:42 pandaJob.out
[2025-11-24 16:53:47] -rw------- 1 boinc boinc    989786 Nov 24 08:43 agis_schedconf.cvmfs.json
[2025-11-24 16:53:47] -rw-r--r-- 1 boinc boinc       533 Nov 24 16:48 boinc_task_state.xml
[2025-11-24 16:53:47] -rw------- 1 boinc boinc        96 Nov 24 16:52 pilot_heartbeat.json
[2025-11-24 16:53:47] -rw------- 1 boinc boinc 913166433 Nov 24 16:52 HITS.47523449._008751.pool.root.1
[2025-11-24 16:53:47] -rw------- 1 boinc boinc      1026 Nov 24 16:53 memory_monitor_summary.json
[2025-11-24 16:53:47] -rw------- 1 boinc boinc   1516227 Nov 24 16:53 agis_ddmendpoints.agis.ALL.json
[2025-11-24 16:53:47] -rw------- 1 boinc boinc   1172067 Nov 24 16:53 log.47523449._008751.job.log.tgz.1
[2025-11-24 16:53:47] -rw------- 1 boinc boinc      8577 Nov 24 16:53 heartbeat.json
[2025-11-24 16:53:47] -rw-r--r-- 1 boinc boinc      8192 Nov 24 16:53 boinc_mmap_file
[2025-11-24 16:53:47] -rw-r--r-- 1 boinc boinc        29 Nov 24 16:53 wrapper_checkpoint.txt
[2025-11-24 16:53:47] -rw------- 1 boinc boinc       747 Nov 24 16:53 pilotlog.txt
[2025-11-24 16:53:47] -rw------- 1 boinc boinc   4136240 Nov 24 16:53 log.47523449._008751.job.log.1
[2025-11-24 16:53:47] -rw------- 1 boinc boinc       353 Nov 24 16:53 output.list
[2025-11-24 16:53:47] -rw-r--r-- 1 boinc boinc       620 Nov 24 16:53 runtime_log
[2025-11-24 16:53:47] -rw------- 1 boinc boinc   5324800 Nov 24 16:53 result.tar.gz
[2025-11-24 16:53:47] -rw-r--r-- 1 boinc boinc      9003 Nov 24 16:53 runtime_log.err
[2025-11-24 16:53:47] -rw------- 1 boinc boinc       794 Nov 24 16:53 MUcMDmeKQg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6UIKDmluEUPn.diag
[2025-11-24 16:53:47] -rw-r--r-- 1 boinc boinc     23494 Nov 24 16:53 stderr.txt
[2025-11-24 16:53:47] HITS file was successfully produced:
[2025-11-24 16:53:47] -rw------- 1 boinc boinc 913166433 Nov 24 16:52 shared/HITS.pool.root.1
[2025-11-24 16:53:47]  *** Contents of shared directory: ***
[2025-11-24 16:53:47] total 1299028
[2025-11-24 16:53:47] -rw-r--r-- 3 boinc boinc 411089457 Nov 24 04:06 ATLAS.root_0
[2025-11-24 16:53:47] -rw-r--r-- 2 boinc boinc    590101 Nov 24 04:06 input.tar.gz
[2025-11-24 16:53:47] -rw-r--r-- 2 boinc boinc     15847 Nov 24 04:06 start_atlas.sh
[2025-11-24 16:53:47] -rw------- 1 boinc boinc 913166433 Nov 24 16:52 HITS.pool.root.1
[2025-11-24 16:53:47] -rw------- 1 boinc boinc   5324800 Nov 24 16:53 result.tar.gz
16:53:48 (2026951): run_atlas exited; CPU time 86756.783915
16:53:48 (2026951): called boinc_finish(0)

</stderr_txt>
]]>

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