Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:17:04 (6309): wrapper (7.7.26015): starting
04:17:04 (6309): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 04:17:04] Arguments: --nthreads 8
[2025-11-24 04:17:04] Threads: 8
[2025-11-24 04:17:04] Checking for CVMFS
[2025-11-24 04:17:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 04:17:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 04:17:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 04:17:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 04:17:06] 2.11.2.0 4277 281765 136132 153230 1 117 12994245 25165824 4462 130560 2 142309384 99.885 75140795 2963 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 04:17:06] CVMFS is ok
[2025-11-24 04:17:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 04:17:06] Checking for apptainer binary...
[2025-11-24 04:17:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 04:17:06] Running /usr/bin/apptainer --version
[2025-11-24 04:17:06] apptainer version 1.3.2-1.el7
[2025-11-24 04:17:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 04:17:11] cg-vwn279.simple-grid.lan
[2025-11-24 04:17:11] apptainer works
[2025-11-24 04:17:11] Set ATHENA_PROC_NUMBER=8
[2025-11-24 04:17:11] Set ATHENA_CORE_NUMBER=8
[2025-11-24 04:17:11] Starting ATLAS job with PandaID=6893881108
[2025-11-24 04:17:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/20 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 03:42:22]  *** The last 200 lines of the pilot log: ***
[2025-11-25 03:42:22] 2025-11-25 02:41:30,799 | INFO     | time since job start (84040s) is within the limit (172800.0s)
[2025-11-25 03:42:22] 2025-11-25 02:41:30,922 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 03:42:22] 2025-11-25 02:41:30,924 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 03:42:22] 2025-11-25 02:41:30,926 | INFO     | using path: /var/lib/boinc/slots/20/PanDA_Pilot-6893881108/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 03:42:22] 2025-11-25 02:41:30,927 | INFO     | extracted standard info from prmon json
[2025-11-25 03:42:22] 2025-11-25 02:41:30,927 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 03:42:22] 2025-11-25 02:41:30,927 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 03:42:22] 2025-11-25 02:41:30,955 | INFO     | fitting pss+swap vs Time
[2025-11-25 03:42:22] 2025-11-25 02:41:30,957 | INFO     | sum of square deviations: 797334889693.0717
[2025-11-25 03:42:22] 2025-11-25 02:41:31,009 | INFO     | sum of deviations: 3907526461007.0317
[2025-11-25 03:42:22] 2025-11-25 02:41:31,010 | INFO     | mean x: 1763996717.6562045
[2025-11-25 03:42:22] 2025-11-25 02:41:31,010 | INFO     | mean y: 2869940.978832117
[2025-11-25 03:42:22] 2025-11-25 02:41:31,010 | INFO     | intersect: -8642009319.25839
[2025-11-25 03:42:22] 2025-11-25 02:41:31,012 | INFO     | chi2: 12.902213152335806
[2025-11-25 03:42:22] 2025-11-25 02:41:31,014 | INFO     | sum of square deviations: 788637265533.8634
[2025-11-25 03:42:22] 2025-11-25 02:41:31,068 | INFO     | sum of deviations: 4369018718519.821
[2025-11-25 03:42:22] 2025-11-25 02:41:31,068 | INFO     | mean x: 1763996565.1604395
[2025-11-25 03:42:22] 2025-11-25 02:41:31,068 | INFO     | mean y: 2878031.567032967
[2025-11-25 03:42:22] 2025-11-25 02:41:31,068 | INFO     | intersect: -9769591961.178574
[2025-11-25 03:42:22] 2025-11-25 02:41:31,070 | INFO     | chi2: 9.768802755739841
[2025-11-25 03:42:22] 2025-11-25 02:41:31,070 | INFO     | current chi2=9.768802755739841 (change=24.28583654292438 %)
[2025-11-25 03:42:22] 2025-11-25 02:41:31,071 | INFO     | right removable region: 1364
[2025-11-25 03:42:22] 2025-11-25 02:41:31,073 | INFO     | sum of square deviations: 788636299293.8641
[2025-11-25 03:42:22] 2025-11-25 02:41:31,127 | INFO     | sum of deviations: 3329789574576.124
[2025-11-25 03:42:22] 2025-11-25 02:41:31,128 | INFO     | mean x: 1763996870.1604395
[2025-11-25 03:42:22] 2025-11-25 02:41:31,128 | INFO     | mean y: 2880069.0725274724
[2025-11-25 03:42:22] 2025-11-25 02:41:31,128 | INFO     | intersect: -7445088523.172619
[2025-11-25 03:42:22] 2025-11-25 02:41:31,130 | INFO     | chi2: 8.205017530041477
[2025-11-25 03:42:22] 2025-11-25 02:41:31,130 | INFO     | current chi2=8.205017530041477 (change=36.4061232505987 %)
[2025-11-25 03:42:22] 2025-11-25 02:41:31,132 | INFO     | sum of square deviations: 780001198457.106
[2025-11-25 03:42:22] 2025-11-25 02:41:31,185 | INFO     | sum of deviations: 2863774451041.583
[2025-11-25 03:42:22] 2025-11-25 02:41:31,185 | INFO     | mean x: 1763997022.664706
[2025-11-25 03:42:22] 2025-11-25 02:41:31,185 | INFO     | mean y: 2888296.720588235
[2025-11-25 03:42:22] 2025-11-25 02:41:31,186 | INFO     | intersect: -6473626887.119105
[2025-11-25 03:42:22] 2025-11-25 02:41:31,187 | INFO     | chi2: 5.19901201923086
[2025-11-25 03:42:22] 2025-11-25 02:41:31,188 | INFO     | current chi2=5.19901201923086 (change=36.63618633116341 %)
[2025-11-25 03:42:22] 2025-11-25 02:41:31,190 | INFO     | sum of square deviations: 771429852018.3014
[2025-11-25 03:42:22] 2025-11-25 02:41:31,240 | INFO     | sum of deviations: 2723061347122.198
[2025-11-25 03:42:22] 2025-11-25 02:41:31,240 | INFO     | mean x: 1763997175.1645756
[2025-11-25 03:42:22] 2025-11-25 02:41:31,240 | INFO     | mean y: 2890798.1291512917
[2025-11-25 03:42:22] 2025-11-25 02:41:31,240 | INFO     | intersect: -6223822507.761226
[2025-11-25 03:42:22] 2025-11-25 02:41:31,242 | INFO     | chi2: 4.933276863604465
[2025-11-25 03:42:22] 2025-11-25 02:41:31,242 | INFO     | current chi2=4.933276863604465 (change=5.111262575340389 %)
[2025-11-25 03:42:22] 2025-11-25 02:41:31,243 | INFO     | left removable region: 30
[2025-11-25 03:42:22] 2025-11-25 02:41:31,245 | INFO     | sum of square deviations: 736116600246.5555
[2025-11-25 03:42:22] 2025-11-25 02:41:31,295 | INFO     | sum of deviations: 3092804600610.013
[2025-11-25 03:42:22] 2025-11-25 02:41:31,295 | INFO     | mean x: 1763997449.666417
[2025-11-25 03:42:22] 2025-11-25 02:41:31,295 | INFO     | mean y: 2904610.024737631
[2025-11-25 03:42:22] 2025-11-25 02:41:31,295 | INFO     | intersect: -7408556326.959006
[2025-11-25 03:42:22] 2025-11-25 02:41:31,297 | INFO     | chi2: 0.8614501174178533
[2025-11-25 03:42:22] 2025-11-25 02:41:31,298 | INFO     | current memory leak: 4.20 B/s (using 1334 data points, chi2=0.86)
[2025-11-25 03:42:22] 2025-11-25 02:41:31,300 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-25 03:42:22] 2025-11-25 02:41:31,300 | INFO     | ..............................
[2025-11-25 03:42:22] 2025-11-25 02:41:31,300 | INFO     | . Timing measurements:
[2025-11-25 03:42:22] 2025-11-25 02:41:31,300 | INFO     | . get job = 0 s
[2025-11-25 03:42:22] 2025-11-25 02:41:31,300 | INFO     | . initial setup = 10 s
[2025-11-25 03:42:22] 2025-11-25 02:41:31,301 | INFO     | . payload setup = 153 s
[2025-11-25 03:42:22] 2025-11-25 02:41:31,301 | INFO     | . stage-in = 0 s
[2025-11-25 03:42:22] 2025-11-25 02:41:31,301 | INFO     | . payload execution = 83680 s
[2025-11-25 03:42:22] 2025-11-25 02:41:31,301 | INFO     | . stage-out = 4 s
[2025-11-25 03:42:22] 2025-11-25 02:41:31,301 | INFO     | . log creation = 1 s
[2025-11-25 03:42:22] 2025-11-25 02:41:31,301 | INFO     | ..............................
[2025-11-25 03:42:22] 2025-11-25 02:41:31,420 | INFO     | 
[2025-11-25 03:42:22] 2025-11-25 02:41:31,421 | INFO     | job summary report
[2025-11-25 03:42:22] 2025-11-25 02:41:31,421 | INFO     | --------------------------------------------------
[2025-11-25 03:42:22] 2025-11-25 02:41:31,421 | INFO     | PanDA job id: 6893881108
[2025-11-25 03:42:22] 2025-11-25 02:41:31,421 | INFO     | task id: 47523449
[2025-11-25 03:42:22] 2025-11-25 02:41:31,421 | INFO     | errors: (none)
[2025-11-25 03:42:22] 2025-11-25 02:41:31,421 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 03:42:22] 2025-11-25 02:41:31,421 | INFO     | pilot state: finished 
[2025-11-25 03:42:22] 2025-11-25 02:41:31,421 | INFO     | transexitcode: 0
[2025-11-25 03:42:22] 2025-11-25 02:41:31,421 | INFO     | exeerrorcode: 0
[2025-11-25 03:42:22] 2025-11-25 02:41:31,422 | INFO     | exeerrordiag: 
[2025-11-25 03:42:22] 2025-11-25 02:41:31,422 | INFO     | exitcode: 0
[2025-11-25 03:42:22] 2025-11-25 02:41:31,422 | INFO     | exitmsg: OK
[2025-11-25 03:42:22] 2025-11-25 02:41:31,422 | INFO     | cpuconsumptiontime: 341775 s
[2025-11-25 03:42:22] 2025-11-25 02:41:31,422 | INFO     | nevents: 1000
[2025-11-25 03:42:22] 2025-11-25 02:41:31,422 | INFO     | neventsw: 0
[2025-11-25 03:42:22] 2025-11-25 02:41:31,422 | INFO     | pid: 16735
[2025-11-25 03:42:22] 2025-11-25 02:41:31,422 | INFO     | pgrp: 16735
[2025-11-25 03:42:22] 2025-11-25 02:41:31,422 | INFO     | corecount: 8
[2025-11-25 03:42:22] 2025-11-25 02:41:31,422 | INFO     | event service: False
[2025-11-25 03:42:22] 2025-11-25 02:41:31,423 | INFO     | sizes: {0: 2298586, 1: 2298785, 12: 2298785, 23: 2298813, 33: 2298841, 44: 2298897, 55: 2299053, 66: 2299081, 77: 2299109, 87: 2299165, 89: 2299455, 98: 2299763, 8
[2025-11-25 03:42:22] 2025-11-25 02:41:31,423 | INFO     | --------------------------------------------------
[2025-11-25 03:42:22] 2025-11-25 02:41:31,423 | INFO     | 
[2025-11-25 03:42:22] 2025-11-25 02:41:31,423 | INFO     | executing command: ls -lF /var/lib/boinc/slots/20
[2025-11-25 03:42:22] 2025-11-25 02:41:31,453 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,454 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,454 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,454 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,454 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,454 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,455 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,455 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,455 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,455 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,455 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,455 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,455 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,455 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,455 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,456 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,456 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,456 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 03:42:22] 2025-11-25 02:41:31,456 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,456 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 03:42:22] 2025-11-25 02:41:31,456 | INFO     | job 6893881108 has completed (purged errors)
[2025-11-25 03:42:22] 2025-11-25 02:41:31,457 | INFO     | overall cleanup function is called
[2025-11-25 03:42:22] 2025-11-25 02:41:32,474 | INFO     | --- collectZombieJob: --- 10, [16735]
[2025-11-25 03:42:22] 2025-11-25 02:41:32,474 | INFO     | zombie collector waiting for pid 16735
[2025-11-25 03:42:22] 2025-11-25 02:41:32,474 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 03:42:22] 2025-11-25 02:41:32,475 | INFO     | collected zombie processes
[2025-11-25 03:42:22] 2025-11-25 02:41:32,475 | INFO     | will attempt to kill all subprocesses of pid=16735
[2025-11-25 03:42:22] 2025-11-25 02:41:32,552 | INFO     | process IDs to be killed: [16735] (in reverse order)
[2025-11-25 03:42:22] 2025-11-25 02:41:32,629 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 03:42:22] 2025-11-25 02:41:32,629 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 03:42:22] 2025-11-25 02:41:32,631 | INFO     | did not find any defunct processes belonging to 16735
[2025-11-25 03:42:22] 2025-11-25 02:41:32,634 | INFO     | did not find any defunct processes belonging to 16735
[2025-11-25 03:42:22] 2025-11-25 02:41:32,636 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 03:42:22] 2025-11-25 02:41:32,636 | INFO     | ready for new job
[2025-11-25 03:42:22] 2025-11-25 02:41:32,636 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 03:42:22] 2025-11-25 02:41:32,642 | INFO     | ***************************************
[2025-11-25 03:42:22] 2025-11-25 02:41:32,643 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 03:42:22] 2025-11-25 02:41:32,643 | INFO     | ***************************************
[2025-11-25 03:42:22] 2025-11-25 02:41:32,643 | INFO     | 
[2025-11-25 03:42:22] 2025-11-25 02:41:32,644 | INFO     | pilot is running in a VM
[2025-11-25 03:42:22] 2025-11-25 02:41:32,644 | INFO     | architecture information:
[2025-11-25 03:42:22] 2025-11-25 02:41:32,645 | INFO     | executing command: cat /etc/os-release
[2025-11-25 03:42:22] 2025-11-25 02:41:32,676 | INFO     | cat /etc/os-release:
[2025-11-25 03:42:22] NAME="CentOS Linux"
[2025-11-25 03:42:22] VERSION="7 (Core)"
[2025-11-25 03:42:22] ID="centos"
[2025-11-25 03:42:22] ID_LIKE="rhel fedora"
[2025-11-25 03:42:22] VERSION_ID="7"
[2025-11-25 03:42:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 03:42:22] ANSI_COLOR="0;31"
[2025-11-25 03:42:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 03:42:22] HOME_URL="https://www.centos.org/"
[2025-11-25 03:42:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 03:42:22] 
[2025-11-25 03:42:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 03:42:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 03:42:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 03:42:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 03:42:22] 
[2025-11-25 03:42:22] 2025-11-25 02:41:32,676 | INFO     | ***************************************
[2025-11-25 03:42:22] 2025-11-25 02:41:33,180 | INFO     | executing command: df -mP /var/lib/boinc/slots/20
[2025-11-25 03:42:22] 2025-11-25 02:41:33,227 | INFO     | sufficient remaining disk space (495848521728 B)
[2025-11-25 03:42:22] 2025-11-25 02:41:33,227 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 03:42:22] 2025-11-25 02:41:33,227 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 03:42:22] 2025-11-25 02:41:33,228 | INFO     | update_server=False
[2025-11-25 03:42:22] 2025-11-25 02:41:33,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 03:42:22] 2025-11-25 02:41:33,229 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 03:42:22] 2025-11-25 02:41:33,229 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:42:22] 2025-11-25 02:41:33,229 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 03:42:22] 2025-11-25 02:41:33,543 | INFO     | all payload control threads have been joined
[2025-11-25 03:42:22] 2025-11-25 02:41:33,735 | INFO     | all data control threads have been joined
[2025-11-25 03:42:22] 2025-11-25 02:41:33,862 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:42:22] 2025-11-25 02:41:33,862 | INFO     | aborting loop
[2025-11-25 03:42:22] 2025-11-25 02:41:34,191 | INFO     | all job control threads have been joined
[2025-11-25 03:42:22] 2025-11-25 02:41:34,234 | INFO     | [job] retrieve thread has finished
[2025-11-25 03:42:22] 2025-11-25 02:41:34,235 | INFO     | [job] queue monitor thread has finished
[2025-11-25 03:42:22] 2025-11-25 02:41:34,312 | INFO     | [data] copytool_in thread has finished
[2025-11-25 03:42:22] 2025-11-25 02:41:34,334 | INFO     | [payload] validate_post thread has finished
[2025-11-25 03:42:22] 2025-11-25 02:41:34,547 | INFO     | [payload] control thread has finished
[2025-11-25 03:42:22] 2025-11-25 02:41:34,569 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 03:42:22] 2025-11-25 02:41:34,682 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 03:42:22] 2025-11-25 02:41:34,738 | INFO     | [data] control thread has finished
[2025-11-25 03:42:22] 2025-11-25 02:41:34,868 | INFO     | [job] job monitor thread has finished
[2025-11-25 03:42:22] 2025-11-25 02:41:35,070 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 03:42:22] 2025-11-25 02:41:35,197 | INFO     | [job] control thread has finished
[2025-11-25 03:42:22] 2025-11-25 02:41:35,235 | INFO     | [data] copytool_out thread has finished
[2025-11-25 03:42:22] 2025-11-25 02:41:35,705 | INFO     | [job] validate thread has finished
[2025-11-25 03:42:22] 2025-11-25 02:41:35,744 | INFO     | [payload] failed_post thread has finished
[2025-11-25 03:42:22] 2025-11-25 02:41:37,236 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 03:42:22] 2025-11-25 02:41:44,129 | INFO     | job.realtimelogging is not enabled
[2025-11-25 03:42:22] 2025-11-25 02:41:45,135 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 03:42:22] 2025-11-25 02:42:03,902 | INFO     | PID=10085 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 03:42:22] 2025-11-25 02:42:03,902 | INFO     | .. there are 2 such processes running
[2025-11-25 03:42:22] 2025-11-25 02:42:03,902 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 03:42:22] 2025-11-25 02:42:03,902 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 03:42:22] 2025-11-25 02:42:03,902 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 03:42:22] 2025-11-25 02:42:16,476 | INFO     | [monitor] cgroup control has ended
[2025-11-25 03:42:22] 2025-11-25 02:42:16,636 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140072192247616)>', '<ExcThread(monitor, started 140071734851328)>']
[2025-11-25 03:42:22] 2025-11-25 02:42:16,972 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 03:42:22] 2025-11-25 02:42:16,972 | INFO     | [monitor] control thread has ended
[2025-11-25 03:42:22] 2025-11-25 02:42:21,662 | INFO     | all workflow threads have been joined
[2025-11-25 03:42:22] 2025-11-25 02:42:21,662 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 03:42:22] 2025-11-25 02:42:21,663 | INFO     | traces error code: 0
[2025-11-25 03:42:22] 2025-11-25 02:42:21,663 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 03:42:22] 2025-11-25 02:42:21,850 [wrapper] ==== pilot stdout END ====
[2025-11-25 03:42:22] 2025-11-25 02:42:21,855 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 03:42:22] 2025-11-25 02:42:21,862 [wrapper] pilotpid: 10085
[2025-11-25 03:42:22] 2025-11-25 02:42:21,866 [wrapper] Pilot exit status: 0
[2025-11-25 03:42:22] 2025-11-25 02:42:21,886 [wrapper] pandaids: 6893881108
[2025-11-25 03:42:22] 2025-11-25 02:42:21,927 [wrapper] cleanup supervisor_pilot 21632 10086
[2025-11-25 03:42:22] 2025-11-25 02:42:21,936 [wrapper] Test setup, not cleaning
[2025-11-25 03:42:22] 2025-11-25 02:42:21,943 [wrapper] apfmon messages muted
[2025-11-25 03:42:22] 2025-11-25 02:42:21,948 [wrapper] ==== wrapper stdout END ====
[2025-11-25 03:42:22] 2025-11-25 02:42:21,952 [wrapper] ==== wrapper stderr END ====
[2025-11-25 03:42:22]  *** Error codes and diagnostics ***
[2025-11-25 03:42:22]     "exeErrorCode": 0,
[2025-11-25 03:42:22]     "exeErrorDiag": "",
[2025-11-25 03:42:22]     "pilotErrorCode": 0,
[2025-11-25 03:42:22]     "pilotErrorDiag": "",
[2025-11-25 03:42:22]  *** Listing of results directory ***
[2025-11-25 03:42:22] total 1325192
[2025-11-25 03:42:22] -rw-r--r--. 1 boinc boinc    576529 Nov 20 20:10 pilot3.tar.gz
[2025-11-25 03:42:22] -rw-r--r--. 1 boinc boinc      5112 Nov 20 20:50 queuedata.json
[2025-11-25 03:42:22] -rwx------. 1 boinc boinc     36292 Nov 20 20:51 runpilot2-wrapper.sh
[2025-11-25 03:42:22] -rw-r--r--. 1 boinc boinc       100 Nov 24 04:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 03:42:22] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 04:17 run_atlas
[2025-11-25 03:42:22] -rw-r--r--. 1 boinc boinc       105 Nov 24 04:17 job.xml
[2025-11-25 03:42:22] -rw-r--r--. 2 boinc boinc 410663382 Nov 24 04:17 EVNT.47493127._000851.pool.root.1
[2025-11-25 03:42:22] -rw-r--r--. 1 boinc boinc      6392 Nov 24 04:17 init_data.xml
[2025-11-25 03:42:22] -rw-r--r--. 2 boinc boinc     15847 Nov 24 04:17 start_atlas.sh
[2025-11-25 03:42:22] drwxrwx--x. 2 boinc boinc        68 Nov 24 04:17 shared
[2025-11-25 03:42:22] -rw-r--r--. 2 boinc boinc    590100 Nov 24 04:17 input.tar.gz
[2025-11-25 03:42:22] -rw-r--r--. 1 boinc boinc         0 Nov 24 04:17 boinc_lockfile
[2025-11-25 03:42:22] -rw-r--r--. 1 boinc boinc      2785 Nov 24 04:17 pandaJob.out
[2025-11-25 03:42:22] -rw-------. 1 boinc boinc    989786 Nov 24 04:20 agis_schedconf.cvmfs.json
[2025-11-25 03:42:22] drwx------. 5 boinc boinc      4096 Nov 24 04:20 pilot3
[2025-11-25 03:42:22] -rw-r--r--. 1 boinc boinc       533 Nov 25 03:30 boinc_task_state.xml
[2025-11-25 03:42:22] -rw-------. 1 boinc boinc 915188004 Nov 25 03:40 HITS.47523449._008505.pool.root.1
[2025-11-25 03:42:22] -rw-------. 1 boinc boinc        95 Nov 25 03:41 pilot_heartbeat.json
[2025-11-25 03:42:22] -rw-------. 1 boinc boinc      1034 Nov 25 03:41 memory_monitor_summary.json
[2025-11-25 03:42:22] -rw-------. 1 boinc boinc   1516227 Nov 25 03:41 agis_ddmendpoints.agis.ALL.json
[2025-11-25 03:42:22] -rw-------. 1 boinc boinc   2461730 Nov 25 03:41 log.47523449._008505.job.log.tgz.1
[2025-11-25 03:42:22] -rw-------. 1 boinc boinc      8627 Nov 25 03:41 heartbeat.json
[2025-11-25 03:42:22] -rw-r--r--. 1 boinc boinc      8192 Nov 25 03:42 boinc_mmap_file
[2025-11-25 03:42:22] -rw-r--r--. 1 boinc boinc        29 Nov 25 03:42 wrapper_checkpoint.txt
[2025-11-25 03:42:22] -rw-------. 1 boinc boinc      4957 Nov 25 03:42 pilotlog.txt
[2025-11-25 03:42:22] -rw-------. 1 boinc boinc  11159209 Nov 25 03:42 log.47523449._008505.job.log.1
[2025-11-25 03:42:22] -rw-------. 1 boinc boinc       353 Nov 25 03:42 output.list
[2025-11-25 03:42:22] -rw-r--r--. 1 boinc boinc       620 Nov 25 03:42 runtime_log
[2025-11-25 03:42:22] -rw-------. 1 boinc boinc  13639680 Nov 25 03:42 result.tar.gz
[2025-11-25 03:42:22] -rw-r--r--. 1 boinc boinc      8833 Nov 25 03:42 runtime_log.err
[2025-11-25 03:42:22] -rw-------. 1 boinc boinc       662 Nov 25 03:42 HY0KDmmrPg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjSIKDmGpH6dn.diag
[2025-11-25 03:42:22] -rw-r--r--. 1 boinc boinc     20954 Nov 25 03:42 stderr.txt
[2025-11-25 03:42:22] HITS file was successfully produced:
[2025-11-25 03:42:22] -rw-------. 1 boinc boinc 915188004 Nov 25 03:40 shared/HITS.pool.root.1
[2025-11-25 03:42:22]  *** Contents of shared directory: ***
[2025-11-25 03:42:22] total 1308696
[2025-11-25 03:42:22] -rw-r--r--. 2 boinc boinc 410663382 Nov 24 04:17 ATLAS.root_0
[2025-11-25 03:42:22] -rw-r--r--. 2 boinc boinc     15847 Nov 24 04:17 start_atlas.sh
[2025-11-25 03:42:22] -rw-r--r--. 2 boinc boinc    590100 Nov 24 04:17 input.tar.gz
[2025-11-25 03:42:22] -rw-------. 1 boinc boinc 915188004 Nov 25 03:40 HITS.pool.root.1
[2025-11-25 03:42:22] -rw-------. 1 boinc boinc  13639680 Nov 25 03:42 result.tar.gz
03:42:23 (6309): run_atlas exited; CPU time 342030.679635
03:42:23 (6309): called boinc_finish(0)

</stderr_txt>
]]>

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