Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:51:59 (748546): wrapper (7.7.26015): starting
00:51:59 (748546): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 00:51:59] Arguments: --nthreads 3
[2025-11-27 00:51:59] Threads: 3
[2025-11-27 00:51:59] Checking for CVMFS
[2025-11-27 00:51:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:51:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:51:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:51:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:51:59] 2.9.2.0 619250 499 52192 153340 2 81 9739719 36864001 0 130560 0 182843 99.982 19822 372 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 00:51:59] CVMFS is ok
[2025-11-27 00:51:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:51:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:51:59] Further information can be found at the LHC@home message board.
[2025-11-27 00:51:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:51:59] Checking for apptainer binary...
[2025-11-27 00:51:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:51:59] Running /usr/bin/apptainer --version
[2025-11-27 00:51:59] apptainer version 1.4.1-1.1
[2025-11-27 00:51:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:51:59] atlasA141
[2025-11-27 00:51:59] apptainer works
[2025-11-27 00:51:59] Set ATHENA_PROC_NUMBER=3
[2025-11-27 00:51:59] Set ATHENA_CORE_NUMBER=3
[2025-11-27 00:51:59] Starting ATLAS job with PandaID=6893881442
[2025-11-27 00:51:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:04:48]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:04:48] 2025-11-27 08:03:43,624 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3777.354333333334
[2025-11-27 09:04:48] 2025-11-27 08:03:43,625 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6893881442/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 09:04:48] 2025-11-27 08:03:43,625 | INFO     | extracted standard info from prmon json
[2025-11-27 09:04:48] 2025-11-27 08:03:43,625 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 09:04:48] 2025-11-27 08:03:43,625 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 09:04:48] 2025-11-27 08:03:43,628 | INFO     | fitting pss+swap vs Time
[2025-11-27 09:04:48] 2025-11-27 08:03:43,628 | INFO     | sum of square deviations: 35157068485.0
[2025-11-27 09:04:48] 2025-11-27 08:03:43,630 | INFO     | sum of deviations: 166714144237.99997
[2025-11-27 09:04:48] 2025-11-27 08:03:43,630 | INFO     | mean x: 1764215876.5
[2025-11-27 09:04:48] 2025-11-27 08:03:43,630 | INFO     | mean y: 2190937.7314049588
[2025-11-27 09:04:48] 2025-11-27 08:03:43,630 | INFO     | intersect: -8363686900.669106
[2025-11-27 09:04:48] 2025-11-27 08:03:43,630 | INFO     | chi2: 4.286658407717637
[2025-11-27 09:04:48] 2025-11-27 08:03:43,631 | INFO     | sum of square deviations: 34078704080.0
[2025-11-27 09:04:48] 2025-11-27 08:03:43,632 | INFO     | sum of deviations: 246617608149.0
[2025-11-27 09:04:48] 2025-11-27 08:03:43,633 | INFO     | mean x: 1764215724.0
[2025-11-27 09:04:48] 2025-11-27 08:03:43,633 | INFO     | mean y: 2202194.409185804
[2025-11-27 09:04:48] 2025-11-27 08:03:43,633 | INFO     | intersect: -12764910694.92978
[2025-11-27 09:04:48] 2025-11-27 08:03:43,633 | INFO     | chi2: 2.3622975608104553
[2025-11-27 09:04:48] 2025-11-27 08:03:43,633 | INFO     | current chi2=2.3622975608104553 (change=44.89186363538066 %)
[2025-11-27 09:04:48] 2025-11-27 08:03:43,633 | INFO     | sum of square deviations: 33022619162.5
[2025-11-27 09:04:48] 2025-11-27 08:03:43,635 | INFO     | sum of deviations: 242303016294.99997
[2025-11-27 09:04:48] 2025-11-27 08:03:43,635 | INFO     | mean x: 1764215571.5
[2025-11-27 09:04:48] 2025-11-27 08:03:43,635 | INFO     | mean y: 2201571.405063291
[2025-11-27 09:04:48] 2025-11-27 08:03:43,635 | INFO     | intersect: -12942706046.779604
[2025-11-27 09:04:48] 2025-11-27 08:03:43,635 | INFO     | chi2: 2.3618041005217205
[2025-11-27 09:04:48] 2025-11-27 08:03:43,635 | INFO     | current chi2=2.3618041005217205 (change=0.02088899793663011 %)
[2025-11-27 09:04:48] 2025-11-27 08:03:43,635 | INFO     | right removable region: 473
[2025-11-27 09:04:48] 2025-11-27 08:03:43,635 | INFO     | sum of square deviations: 34078704080.0
[2025-11-27 09:04:48] 2025-11-27 08:03:43,637 | INFO     | sum of deviations: 67239424345.0
[2025-11-27 09:04:48] 2025-11-27 08:03:43,637 | INFO     | mean x: 1764216029.0
[2025-11-27 09:04:48] 2025-11-27 08:03:43,637 | INFO     | mean y: 2204984.1962421713
[2025-11-27 09:04:48] 2025-11-27 08:03:43,637 | INFO     | intersect: -3478704088.276382
[2025-11-27 09:04:48] 2025-11-27 08:03:43,637 | INFO     | chi2: 2.235587176236563
[2025-11-27 09:04:48] 2025-11-27 08:03:43,638 | INFO     | current chi2=2.235587176236563 (change=47.847788099661855 %)
[2025-11-27 09:04:48] 2025-11-27 08:03:43,638 | INFO     | sum of square deviations: 33022619162.5
[2025-11-27 09:04:48] 2025-11-27 08:03:43,640 | INFO     | sum of deviations: 43873290683.499985
[2025-11-27 09:04:48] 2025-11-27 08:03:43,640 | INFO     | mean x: 1764216181.5
[2025-11-27 09:04:48] 2025-11-27 08:03:43,640 | INFO     | mean y: 2208341.5632911394
[2025-11-27 09:04:48] 2025-11-27 08:03:43,640 | INFO     | intersect: -2341699298.7907
[2025-11-27 09:04:48] 2025-11-27 08:03:43,640 | INFO     | chi2: 2.0082319257675536
[2025-11-27 09:04:48] 2025-11-27 08:03:43,640 | INFO     | current chi2=2.0082319257675536 (change=10.169822625827733 %)
[2025-11-27 09:04:48] 2025-11-27 08:03:43,640 | INFO     | left removable region: 20
[2025-11-27 09:04:48] 2025-11-27 08:03:43,640 | INFO     | sum of square deviations: 28825106042.0
[2025-11-27 09:04:48] 2025-11-27 08:03:43,642 | INFO     | sum of deviations: 106908695342.99998
[2025-11-27 09:04:48] 2025-11-27 08:03:43,642 | INFO     | mean x: 1764216151.0
[2025-11-27 09:04:48] 2025-11-27 08:03:43,642 | INFO     | mean y: 2221514.454746137
[2025-11-27 09:04:48] 2025-11-27 08:03:43,642 | INFO     | intersect: -6541034448.997472
[2025-11-27 09:04:48] 2025-11-27 08:03:43,642 | INFO     | chi2: 0.05796008022281558
[2025-11-27 09:04:48] 2025-11-27 08:03:43,642 | INFO     | current memory leak: 3.71 B/s (using 453 data points, chi2=0.06)
[2025-11-27 09:04:48] 2025-11-27 08:03:43,642 | INFO     | could have reported an average CPU frequency of 3984 MHz (20 samples)
[2025-11-27 09:04:48] 2025-11-27 08:03:43,643 | INFO     | ..............................
[2025-11-27 09:04:48] 2025-11-27 08:03:43,643 | INFO     | . Timing measurements:
[2025-11-27 09:04:48] 2025-11-27 08:03:43,643 | INFO     | . get job = 0 s
[2025-11-27 09:04:48] 2025-11-27 08:03:43,643 | INFO     | . initial setup = 1 s
[2025-11-27 09:04:48] 2025-11-27 08:03:43,643 | INFO     | . payload setup = 3 s
[2025-11-27 09:04:48] 2025-11-27 08:03:43,643 | INFO     | . stage-in = 0 s
[2025-11-27 09:04:48] 2025-11-27 08:03:43,643 | INFO     | . payload execution = 29473 s
[2025-11-27 09:04:48] 2025-11-27 08:03:43,643 | INFO     | . stage-out = 1 s
[2025-11-27 09:04:48] 2025-11-27 08:03:43,643 | INFO     | . log creation = 0 s
[2025-11-27 09:04:48] 2025-11-27 08:03:43,643 | INFO     | ..............................
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | 
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | job summary report
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | --------------------------------------------------
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | PanDA job id: 6893881442
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | task id: 47523449
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | errors: (none)
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | pilot state: finished 
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | transexitcode: 0
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | exeerrorcode: 0
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | exeerrordiag: 
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | exitcode: 0
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | exitmsg: OK
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | cpuconsumptiontime: 87125 s
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | nevents: 1000
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | neventsw: 0
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | pid: 758712
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | pgrp: 758712
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | corecount: 3
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | event service: False
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | sizes: {0: 2284267, 2: 2284529, 10: 2284557, 29479: 2323688, 29480: 2332688, 29482: 2332744, 29485: 2333118}
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | --------------------------------------------------
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | 
[2025-11-27 09:04:48] 2025-11-27 08:03:43,674 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-27 09:04:48] 2025-11-27 08:03:43,687 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | job 6893881442 has completed (purged errors)
[2025-11-27 09:04:48] 2025-11-27 08:03:43,688 | INFO     | overall cleanup function is called
[2025-11-27 09:04:48] 2025-11-27 08:03:44,697 | INFO     | --- collectZombieJob: --- 10, [758712]
[2025-11-27 09:04:48] 2025-11-27 08:03:44,697 | INFO     | zombie collector waiting for pid 758712
[2025-11-27 09:04:48] 2025-11-27 08:03:44,697 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 09:04:48] 2025-11-27 08:03:44,697 | INFO     | collected zombie processes
[2025-11-27 09:04:48] 2025-11-27 08:03:44,697 | INFO     | will attempt to kill all subprocesses of pid=758712
[2025-11-27 09:04:48] 2025-11-27 08:03:44,804 | INFO     | process IDs to be killed: [758712] (in reverse order)
[2025-11-27 09:04:48] 2025-11-27 08:03:44,812 | WARNING  | process 758712 can no longer be monitored (due to stat problems) - aborting
[2025-11-27 09:04:48] 2025-11-27 08:03:44,833 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 09:04:48] 2025-11-27 08:03:44,833 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 09:04:48] 2025-11-27 08:03:44,839 | INFO     | did not find any defunct processes belonging to 758712
[2025-11-27 09:04:48] 2025-11-27 08:03:44,844 | INFO     | did not find any defunct processes belonging to 758712
[2025-11-27 09:04:48] 2025-11-27 08:03:44,845 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 09:04:48] 2025-11-27 08:03:44,845 | INFO     | ready for new job
[2025-11-27 09:04:48] 2025-11-27 08:03:44,845 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 09:04:48] 2025-11-27 08:03:44,846 | INFO     | ***************************************
[2025-11-27 09:04:48] 2025-11-27 08:03:44,846 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 09:04:48] 2025-11-27 08:03:44,846 | INFO     | ***************************************
[2025-11-27 09:04:48] 2025-11-27 08:03:44,846 | INFO     | 
[2025-11-27 09:04:48] 2025-11-27 08:03:44,847 | INFO     | architecture information:
[2025-11-27 09:04:48] 2025-11-27 08:03:44,847 | INFO     | executing command: cat /etc/os-release
[2025-11-27 09:04:48] 2025-11-27 08:03:44,857 | INFO     | cat /etc/os-release:
[2025-11-27 09:04:48] NAME="CentOS Linux"
[2025-11-27 09:04:48] VERSION="7 (Core)"
[2025-11-27 09:04:48] ID="centos"
[2025-11-27 09:04:48] ID_LIKE="rhel fedora"
[2025-11-27 09:04:48] VERSION_ID="7"
[2025-11-27 09:04:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 09:04:48] ANSI_COLOR="0;31"
[2025-11-27 09:04:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 09:04:48] HOME_URL="https://www.centos.org/"
[2025-11-27 09:04:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 09:04:48] 
[2025-11-27 09:04:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 09:04:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 09:04:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 09:04:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 09:04:48] 
[2025-11-27 09:04:48] 2025-11-27 08:03:44,857 | INFO     | ***************************************
[2025-11-27 09:04:48] 2025-11-27 08:03:44,868 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 09:04:48] 2025-11-27 08:03:44,923 | INFO     | number of running child processes to parent process 758712: 1
[2025-11-27 09:04:48] 2025-11-27 08:03:44,924 | INFO     | maximum number of monitored processes: 8
[2025-11-27 09:04:48] 2025-11-27 08:03:44,924 | INFO     | aborting job monitoring since job object (job id=6893881442) has expired
[2025-11-27 09:04:48] 2025-11-27 08:03:45,359 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 09:04:48] 2025-11-27 08:03:45,369 | INFO     | sufficient remaining disk space (343758864384 B)
[2025-11-27 09:04:48] 2025-11-27 08:03:45,370 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 09:04:48] 2025-11-27 08:03:45,370 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 09:04:48] 2025-11-27 08:03:45,370 | INFO     | update_server=False
[2025-11-27 09:04:48] 2025-11-27 08:03:45,370 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 09:04:48] 2025-11-27 08:03:45,370 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:04:48] 2025-11-27 08:03:45,370 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:04:48] 2025-11-27 08:03:45,370 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:04:48] 2025-11-27 08:03:45,370 | INFO     | will abort loop
[2025-11-27 09:04:48] 2025-11-27 08:03:46,214 | INFO     | all payload control threads have been joined
[2025-11-27 09:04:48] 2025-11-27 08:03:46,375 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:04:48] 2025-11-27 08:03:46,375 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:04:48] 2025-11-27 08:03:46,375 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:04:48] 2025-11-27 08:03:46,414 | INFO     | all data control threads have been joined
[2025-11-27 09:04:48] 2025-11-27 08:03:46,538 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:04:48] 2025-11-27 08:03:46,591 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:04:48] 2025-11-27 08:03:46,679 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:04:48] 2025-11-27 08:03:46,730 | INFO     | all job control threads have been joined
[2025-11-27 09:04:48] 2025-11-27 08:03:47,080 | INFO     | [job] validate thread has finished
[2025-11-27 09:04:48] 2025-11-27 08:03:47,087 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:04:48] 2025-11-27 08:03:47,119 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:04:48] 2025-11-27 08:03:47,177 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:04:48] 2025-11-27 08:03:47,219 | INFO     | [payload] control thread has finished
[2025-11-27 09:04:48] 2025-11-27 08:03:47,259 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:04:48] 2025-11-27 08:03:47,375 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:04:48] 2025-11-27 08:03:47,420 | INFO     | [data] control thread has finished
[2025-11-27 09:04:48] 2025-11-27 08:03:47,468 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:04:48] 2025-11-27 08:03:47,735 | INFO     | [job] control thread has finished
[2025-11-27 09:04:48] 2025-11-27 08:03:51,183 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:04:48] 2025-11-27 08:04:16,063 | INFO     | PID=752269 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 09:04:48] 2025-11-27 08:04:16,063 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 09:04:48] 2025-11-27 08:04:16,063 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 09:04:48] 2025-11-27 08:04:16,063 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:04:48] 2025-11-27 08:04:41,952 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:04:48] 2025-11-27 08:04:43,826 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140312882296640)>', '<ExcThread(monitor, started 140312395630336)>']
[2025-11-27 09:04:48] 2025-11-27 08:04:44,199 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:04:48] 2025-11-27 08:04:44,199 | INFO     | [monitor] control thread has ended
[2025-11-27 09:04:48] 2025-11-27 08:04:48,852 | INFO     | all workflow threads have been joined
[2025-11-27 09:04:48] 2025-11-27 08:04:48,852 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:04:48] 2025-11-27 08:04:48,852 | INFO     | traces error code: 0
[2025-11-27 09:04:48] 2025-11-27 08:04:48,852 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:04:48] 2025-11-27 08:04:48,904 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:04:48] 2025-11-27 08:04:48,907 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:04:48] 2025-11-27 08:04:48,909 [wrapper] pilotpid: 752269
[2025-11-27 09:04:48] 2025-11-27 08:04:48,912 [wrapper] Pilot exit status: 0
[2025-11-27 09:04:48] 2025-11-27 08:04:48,919 [wrapper] pandaids: 6893881442
[2025-11-27 09:04:48] 2025-11-27 08:04:48,940 [wrapper] cleanup supervisor_pilot  867268 752270
[2025-11-27 09:04:48] 2025-11-27 08:04:48,942 [wrapper] Test setup, not cleaning
[2025-11-27 09:04:48] 2025-11-27 08:04:48,945 [wrapper] apfmon messages muted
[2025-11-27 09:04:48] 2025-11-27 08:04:48,947 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:04:48] 2025-11-27 08:04:48,950 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:04:48]  *** Error codes and diagnostics ***
[2025-11-27 09:04:48]     "exeErrorCode": 0,
[2025-11-27 09:04:48]     "exeErrorDiag": "",
[2025-11-27 09:04:48]     "pilotErrorCode": 0,
[2025-11-27 09:04:48]     "pilotErrorDiag": "",
[2025-11-27 09:04:48]  *** Listing of results directory ***
[2025-11-27 09:04:48] total 1307452
[2025-11-27 09:04:48] -rw-r--r-- 1 boinc boinc    576529 Nov 20 20:10 pilot3.tar.gz
[2025-11-27 09:04:48] -rwx------ 1 boinc boinc     36292 Nov 20 21:04 runpilot2-wrapper.sh
[2025-11-27 09:04:48] -rw-r--r-- 1 boinc boinc      5112 Nov 20 21:04 queuedata.json
[2025-11-27 09:04:48] -rw-r--r-- 1 boinc boinc       100 Nov 27 00:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:04:48] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 00:51 run_atlas
[2025-11-27 09:04:48] -rw-r--r-- 1 boinc boinc       105 Nov 27 00:51 job.xml
[2025-11-27 09:04:48] -rw-r--r-- 2 boinc boinc 406962208 Nov 27 00:51 EVNT.47493127._000864.pool.root.1
[2025-11-27 09:04:48] -rw-r--r-- 2 boinc boinc    590101 Nov 27 00:51 input.tar.gz
[2025-11-27 09:04:48] drwxrwx--x 2 boinc boinc      4096 Nov 27 00:51 shared
[2025-11-27 09:04:48] -rw-r--r-- 2 boinc boinc     15847 Nov 27 00:51 start_atlas.sh
[2025-11-27 09:04:48] -rw-r--r-- 1 boinc boinc         0 Nov 27 00:51 boinc_setup_complete
[2025-11-27 09:04:48] -rw-r--r-- 1 boinc boinc      6443 Nov 27 00:51 init_data.xml
[2025-11-27 09:04:48] -rw-r--r-- 1 boinc boinc         0 Nov 27 00:51 boinc_lockfile
[2025-11-27 09:04:48] -rw-r--r-- 1 boinc boinc      2785 Nov 27 00:51 pandaJob.out
[2025-11-27 09:04:48] -rw------- 1 boinc boinc    991538 Nov 27 00:52 agis_schedconf.cvmfs.json
[2025-11-27 09:04:48] drwx------ 5 boinc boinc      4096 Nov 27 00:52 pilot3
[2025-11-27 09:04:48] -rw-r--r-- 1 boinc boinc       531 Nov 27 09:00 boinc_task_state.xml
[2025-11-27 09:04:48] -rw------- 1 boinc boinc 917319286 Nov 27 09:03 HITS.47523449._008634.pool.root.1
[2025-11-27 09:04:48] -rw------- 1 boinc boinc      1034 Nov 27 09:03 memory_monitor_summary.json
[2025-11-27 09:04:48] -rw------- 1 boinc boinc   1516240 Nov 27 09:03 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:04:48] -rw------- 1 boinc boinc   1175015 Nov 27 09:03 log.47523449._008634.job.log.tgz.1
[2025-11-27 09:04:48] -rw------- 1 boinc boinc      8586 Nov 27 09:03 heartbeat.json
[2025-11-27 09:04:48] -rw------- 1 boinc boinc        95 Nov 27 09:04 pilot_heartbeat.json
[2025-11-27 09:04:48] -rw-r--r-- 1 boinc boinc      8192 Nov 27 09:04 boinc_mmap_file
[2025-11-27 09:04:48] -rw-r--r-- 1 boinc boinc        28 Nov 27 09:04 wrapper_checkpoint.txt
[2025-11-27 09:04:48] -rw------- 1 boinc boinc      5160 Nov 27 09:04 pilotlog.txt
[2025-11-27 09:04:48] -rw------- 1 boinc boinc   4139848 Nov 27 09:04 log.47523449._008634.job.log.1
[2025-11-27 09:04:48] -rw------- 1 boinc boinc       353 Nov 27 09:04 output.list
[2025-11-27 09:04:48] -rw-r--r-- 1 boinc boinc       620 Nov 27 09:04 runtime_log
[2025-11-27 09:04:48] -rw------- 1 boinc boinc   5335040 Nov 27 09:04 result.tar.gz
[2025-11-27 09:04:48] -rw-r--r-- 1 boinc boinc      8913 Nov 27 09:04 runtime_log.err
[2025-11-27 09:04:48] -rw------- 1 boinc boinc       668 Nov 27 09:04 AhTMDme4Pg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2TIKDmgjaZGn.diag
[2025-11-27 09:04:48] -rw-r--r-- 1 boinc boinc     21283 Nov 27 09:04 stderr.txt
[2025-11-27 09:04:49] HITS file was successfully produced:
[2025-11-27 09:04:49] -rw------- 1 boinc boinc 917319286 Nov 27 09:03 shared/HITS.pool.root.1
[2025-11-27 09:04:49]  *** Contents of shared directory: ***
[2025-11-27 09:04:49] total 1299064
[2025-11-27 09:04:49] -rw-r--r-- 2 boinc boinc 406962208 Nov 27 00:51 ATLAS.root_0
[2025-11-27 09:04:49] -rw-r--r-- 2 boinc boinc    590101 Nov 27 00:51 input.tar.gz
[2025-11-27 09:04:49] -rw-r--r-- 2 boinc boinc     15847 Nov 27 00:51 start_atlas.sh
[2025-11-27 09:04:49] -rw------- 1 boinc boinc 917319286 Nov 27 09:03 HITS.pool.root.1
[2025-11-27 09:04:49] -rw------- 1 boinc boinc   5335040 Nov 27 09:04 result.tar.gz
09:04:50 (748546): run_atlas exited; CPU time 87173.681481
09:04:50 (748546): called boinc_finish(0)

</stderr_txt>
]]>

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