Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:07:27 (12095): wrapper (7.7.26015): starting
02:07:27 (12095): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 02:07:27] Arguments: --nthreads 8
[2025-11-24 02:07:27] Threads: 8
[2025-11-24 02:07:27] Checking for CVMFS
[2025-11-24 02:07:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 02:07:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 02:07:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 02:07:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 02:07:30] 2.11.2.0 4554 281813 143708 153227 1 85 17923402 25165824 4632 130560 2 123947441 99.850 83396824 3246 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 02:07:30] CVMFS is ok
[2025-11-24 02:07:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 02:07:30] Checking for apptainer binary...
[2025-11-24 02:07:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 02:07:30] Running /usr/bin/apptainer --version
[2025-11-24 02:07:30] apptainer version 1.3.2-1.el7
[2025-11-24 02:07:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 02:07:54] cg-vwn316.simple-grid.lan
[2025-11-24 02:07:54] apptainer works
[2025-11-24 02:07:54] Set ATHENA_PROC_NUMBER=8
[2025-11-24 02:07:54] Set ATHENA_CORE_NUMBER=8
[2025-11-24 02:07:54] Starting ATLAS job with PandaID=6893880828
[2025-11-24 02:07:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 00:37:51]  *** The last 200 lines of the pilot log: ***
[2025-11-25 00:37:51] 2025-11-24 23:36:44,987 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:37:51] 2025-11-24 23:36:45,946 | INFO     | time since job start (80665s) is within the limit (172800.0s)
[2025-11-25 00:37:51] 2025-11-24 23:36:47,494 | INFO     | monitor loop #5408: job 0:6893880828 is in state 'finished'
[2025-11-25 00:37:51] 2025-11-24 23:36:47,495 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:37:51] 2025-11-24 23:36:47,955 | INFO     | time since job start (80667s) is within the limit (172800.0s)
[2025-11-25 00:37:51] 2025-11-24 23:36:49,963 | INFO     | time since job start (80669s) is within the limit (172800.0s)
[2025-11-25 00:37:51] 2025-11-24 23:36:50,008 | INFO     | monitor loop #5409: job 0:6893880828 is in state 'finished'
[2025-11-25 00:37:51] 2025-11-24 23:36:50,009 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:37:51] 2025-11-24 23:36:51,182 | INFO     | PID=15902 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 00:37:51] 2025-11-24 23:36:51,182 | INFO     | .. there are 9 such processes running
[2025-11-25 00:37:51] 2025-11-24 23:36:52,184 | INFO     | time since job start (80672s) is within the limit (172800.0s)
[2025-11-25 00:37:51] 2025-11-24 23:36:52,513 | INFO     | monitor loop #5410: job 0:6893880828 is in state 'finished'
[2025-11-25 00:37:51] 2025-11-24 23:36:52,514 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:37:51] 2025-11-24 23:36:54,189 | INFO     | time since job start (80674s) is within the limit (172800.0s)
[2025-11-25 00:37:51] 2025-11-24 23:36:54,817 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 00:37:51] 2025-11-24 23:36:54,818 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 00:37:51] 2025-11-24 23:36:54,819 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6893880828/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 00:37:51] 2025-11-24 23:36:54,820 | INFO     | extracted standard info from prmon json
[2025-11-25 00:37:51] 2025-11-24 23:36:54,820 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 00:37:51] 2025-11-24 23:36:54,820 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 00:37:51] 2025-11-24 23:36:54,846 | INFO     | fitting pss+swap vs Time
[2025-11-25 00:37:51] 2025-11-24 23:36:54,848 | INFO     | sum of square deviations: 701895883537.8677
[2025-11-25 00:37:51] 2025-11-24 23:36:54,918 | INFO     | sum of deviations: 3411802068782.926
[2025-11-25 00:37:51] 2025-11-24 23:36:54,919 | INFO     | mean x: 1763987270.1355674
[2025-11-25 00:37:51] 2025-11-24 23:36:54,919 | INFO     | mean y: 2831253.112718964
[2025-11-25 00:37:51] 2025-11-24 23:36:54,919 | INFO     | intersect: -8571624814.673267
[2025-11-25 00:37:51] 2025-11-24 23:36:54,921 | INFO     | chi2: 26.547462140637567
[2025-11-25 00:37:51] 2025-11-24 23:36:54,923 | INFO     | sum of square deviations: 693908225721.3961
[2025-11-25 00:37:51] 2025-11-24 23:36:54,975 | INFO     | sum of deviations: 3833108431023.7114
[2025-11-25 00:37:51] 2025-11-24 23:36:54,975 | INFO     | mean x: 1763987117.6399083
[2025-11-25 00:37:51] 2025-11-24 23:36:54,976 | INFO     | mean y: 2839294.9633027525
[2025-11-25 00:37:51] 2025-11-24 23:36:54,976 | INFO     | intersect: -9741322313.458832
[2025-11-25 00:37:51] 2025-11-24 23:36:54,977 | INFO     | chi2: 23.492239940295445
[2025-11-25 00:37:51] 2025-11-24 23:36:54,977 | INFO     | current chi2=23.492239940295445 (change=11.508528326198594 %)
[2025-11-25 00:37:51] 2025-11-24 23:36:54,978 | INFO     | right removable region: 1307
[2025-11-25 00:37:51] 2025-11-24 23:36:54,980 | INFO     | sum of square deviations: 693907316211.3959
[2025-11-25 00:37:51] 2025-11-24 23:36:55,027 | INFO     | sum of deviations: 2852063303753.519
[2025-11-25 00:37:51] 2025-11-24 23:36:55,028 | INFO     | mean x: 1763987422.6399083
[2025-11-25 00:37:51] 2025-11-24 23:36:55,028 | INFO     | mean y: 2841938.3960244646
[2025-11-25 00:37:51] 2025-11-24 23:36:55,028 | INFO     | intersect: -7247411343.068669
[2025-11-25 00:37:51] 2025-11-24 23:36:55,030 | INFO     | chi2: 21.548419916461512
[2025-11-25 00:37:51] 2025-11-24 23:36:55,030 | INFO     | current chi2=21.548419916461512 (change=18.83058424829153 %)
[2025-11-25 00:37:51] 2025-11-24 23:36:55,030 | INFO     | left removable region: 10
[2025-11-25 00:37:51] 2025-11-24 23:36:55,032 | INFO     | sum of square deviations: 676547383048.9817
[2025-11-25 00:37:51] 2025-11-24 23:36:55,050 | INFO     | monitor loop #5411: job 0:6893880828 is in state 'finished'
[2025-11-25 00:37:51] 2025-11-24 23:36:55,051 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:37:51] 2025-11-24 23:36:55,084 | INFO     | sum of deviations: 2873219515540.9375
[2025-11-25 00:37:51] 2025-11-24 23:36:55,084 | INFO     | mean x: 1763987392.149576
[2025-11-25 00:37:51] 2025-11-24 23:36:55,084 | INFO     | mean y: 2861478.072474942
[2025-11-25 00:37:51] 2025-11-24 23:36:55,084 | INFO     | intersect: -7488591637.082627
[2025-11-25 00:37:51] 2025-11-24 23:36:55,086 | INFO     | chi2: 13.908203193404129
[2025-11-25 00:37:51] 2025-11-24 23:36:55,086 | INFO     | current memory leak: 4.25 B/s (using 1297 data points, chi2=13.91)
[2025-11-25 00:37:51] 2025-11-24 23:36:55,088 | INFO     | could have reported an average CPU frequency of 1999 MHz (44 samples)
[2025-11-25 00:37:51] 2025-11-24 23:36:55,088 | INFO     | ..............................
[2025-11-25 00:37:51] 2025-11-24 23:36:55,089 | INFO     | . Timing measurements:
[2025-11-25 00:37:51] 2025-11-24 23:36:55,089 | INFO     | . get job = 0 s
[2025-11-25 00:37:51] 2025-11-24 23:36:55,089 | INFO     | . initial setup = 7 s
[2025-11-25 00:37:51] 2025-11-24 23:36:55,089 | INFO     | . payload setup = 155 s
[2025-11-25 00:37:51] 2025-11-24 23:36:55,089 | INFO     | . stage-in = 0 s
[2025-11-25 00:37:51] 2025-11-24 23:36:55,089 | INFO     | . payload execution = 80213 s
[2025-11-25 00:37:51] 2025-11-24 23:36:55,089 | INFO     | . stage-out = 5 s
[2025-11-25 00:37:51] 2025-11-24 23:36:55,089 | INFO     | . log creation = 2 s
[2025-11-25 00:37:51] 2025-11-24 23:36:55,089 | INFO     | ..............................
[2025-11-25 00:37:51] 2025-11-24 23:36:55,242 | INFO     | 
[2025-11-25 00:37:51] 2025-11-24 23:36:55,243 | INFO     | job summary report
[2025-11-25 00:37:51] 2025-11-24 23:36:55,243 | INFO     | --------------------------------------------------
[2025-11-25 00:37:51] 2025-11-24 23:36:55,243 | INFO     | PanDA job id: 6893880828
[2025-11-25 00:37:51] 2025-11-24 23:36:55,243 | INFO     | task id: 47523449
[2025-11-25 00:37:51] 2025-11-24 23:36:55,243 | INFO     | errors: (none)
[2025-11-25 00:37:51] 2025-11-24 23:36:55,243 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 00:37:51] 2025-11-24 23:36:55,243 | INFO     | pilot state: finished 
[2025-11-25 00:37:51] 2025-11-24 23:36:55,244 | INFO     | transexitcode: 0
[2025-11-25 00:37:51] 2025-11-24 23:36:55,244 | INFO     | exeerrorcode: 0
[2025-11-25 00:37:51] 2025-11-24 23:36:55,244 | INFO     | exeerrordiag: 
[2025-11-25 00:37:51] 2025-11-24 23:36:55,244 | INFO     | exitcode: 0
[2025-11-25 00:37:51] 2025-11-24 23:36:55,244 | INFO     | exitmsg: OK
[2025-11-25 00:37:51] 2025-11-24 23:36:55,244 | INFO     | cpuconsumptiontime: 338718 s
[2025-11-25 00:37:51] 2025-11-24 23:36:55,244 | INFO     | nevents: 1000
[2025-11-25 00:37:51] 2025-11-24 23:36:55,244 | INFO     | neventsw: 0
[2025-11-25 00:37:51] 2025-11-24 23:36:55,244 | INFO     | pid: 22487
[2025-11-25 00:37:51] 2025-11-24 23:36:55,244 | INFO     | pgrp: 22487
[2025-11-25 00:37:51] 2025-11-24 23:36:55,244 | INFO     | corecount: 8
[2025-11-25 00:37:51] 2025-11-24 23:36:55,245 | INFO     | event service: False
[2025-11-25 00:37:51] 2025-11-24 23:36:55,245 | INFO     | sizes: {0: 2298585, 1: 2298784, 12: 2298784, 23: 2298812, 33: 2298840, 44: 2298896, 55: 2299052, 66: 2299080, 76: 2299108, 87: 2299164, 98: 2299192, 100: 2299762, 
[2025-11-25 00:37:51] 2025-11-24 23:36:55,245 | INFO     | --------------------------------------------------
[2025-11-25 00:37:51] 2025-11-24 23:36:55,245 | INFO     | 
[2025-11-25 00:37:51] 2025-11-24 23:36:55,245 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-25 00:37:51] 2025-11-24 23:36:55,838 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,838 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,838 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,838 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,839 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,839 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,839 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,839 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,839 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,839 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,839 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,839 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,839 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,839 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,840 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,840 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,840 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,840 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 00:37:51] 2025-11-24 23:36:55,840 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,840 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 00:37:51] 2025-11-24 23:36:55,840 | INFO     | job 6893880828 has completed (purged errors)
[2025-11-25 00:37:51] 2025-11-24 23:36:55,841 | INFO     | overall cleanup function is called
[2025-11-25 00:37:51] 2025-11-24 23:36:56,862 | INFO     | --- collectZombieJob: --- 10, [22487]
[2025-11-25 00:37:51] 2025-11-24 23:36:56,863 | INFO     | zombie collector waiting for pid 22487
[2025-11-25 00:37:51] 2025-11-24 23:36:56,863 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 00:37:51] 2025-11-24 23:36:56,863 | INFO     | collected zombie processes
[2025-11-25 00:37:51] 2025-11-24 23:36:56,863 | INFO     | will attempt to kill all subprocesses of pid=22487
[2025-11-25 00:37:51] 2025-11-24 23:36:56,986 | INFO     | process IDs to be killed: [22487] (in reverse order)
[2025-11-25 00:37:51] 2025-11-24 23:36:57,291 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 00:37:51] 2025-11-24 23:36:57,292 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 00:37:51] 2025-11-24 23:36:57,296 | INFO     | did not find any defunct processes belonging to 22487
[2025-11-25 00:37:51] 2025-11-24 23:36:57,300 | INFO     | did not find any defunct processes belonging to 22487
[2025-11-25 00:37:51] 2025-11-24 23:36:57,302 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 00:37:51] 2025-11-24 23:36:57,303 | INFO     | ready for new job
[2025-11-25 00:37:51] 2025-11-24 23:36:57,303 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 00:37:51] 2025-11-24 23:36:57,309 | INFO     | ***************************************
[2025-11-25 00:37:51] 2025-11-24 23:36:57,310 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 00:37:51] 2025-11-24 23:36:57,310 | INFO     | ***************************************
[2025-11-25 00:37:51] 2025-11-24 23:36:57,310 | INFO     | 
[2025-11-25 00:37:51] 2025-11-24 23:36:57,311 | INFO     | pilot is running in a VM
[2025-11-25 00:37:51] 2025-11-24 23:36:57,311 | INFO     | architecture information:
[2025-11-25 00:37:51] 2025-11-24 23:36:57,312 | INFO     | executing command: cat /etc/os-release
[2025-11-25 00:37:51] 2025-11-24 23:36:57,579 | INFO     | cat /etc/os-release:
[2025-11-25 00:37:51] NAME="CentOS Linux"
[2025-11-25 00:37:51] VERSION="7 (Core)"
[2025-11-25 00:37:51] ID="centos"
[2025-11-25 00:37:51] ID_LIKE="rhel fedora"
[2025-11-25 00:37:51] VERSION_ID="7"
[2025-11-25 00:37:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 00:37:51] ANSI_COLOR="0;31"
[2025-11-25 00:37:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 00:37:51] HOME_URL="https://www.centos.org/"
[2025-11-25 00:37:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 00:37:51] 
[2025-11-25 00:37:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 00:37:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 00:37:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 00:37:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 00:37:51] 
[2025-11-25 00:37:51] 2025-11-24 23:36:57,579 | INFO     | ***************************************
[2025-11-25 00:37:51] 2025-11-24 23:36:58,083 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-25 00:37:51] 2025-11-24 23:36:58,112 | INFO     | sufficient remaining disk space (494920531968 B)
[2025-11-25 00:37:51] 2025-11-24 23:36:58,112 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 00:37:51] 2025-11-24 23:36:58,112 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 00:37:51] 2025-11-24 23:36:58,112 | INFO     | update_server=False
[2025-11-25 00:37:51] 2025-11-24 23:36:58,113 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 00:37:51] 2025-11-24 23:36:58,564 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:37:51] 2025-11-24 23:36:58,565 | INFO     | aborting loop
[2025-11-25 00:37:51] 2025-11-24 23:36:58,783 | INFO     | all payload control threads have been joined
[2025-11-25 00:37:51] 2025-11-24 23:36:58,827 | INFO     | all data control threads have been joined
[2025-11-25 00:37:51] 2025-11-24 23:36:59,117 | INFO     | [job] retrieve thread has finished
[2025-11-25 00:37:51] 2025-11-24 23:36:59,126 | INFO     | [payload] failed_post thread has finished
[2025-11-25 00:37:51] 2025-11-24 23:36:59,159 | INFO     | all job control threads have been joined
[2025-11-25 00:37:51] 2025-11-24 23:36:59,199 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 00:37:51] 2025-11-24 23:36:59,251 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 00:37:51] 2025-11-24 23:36:59,412 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 00:37:51] 2025-11-24 23:36:59,570 | INFO     | [job] job monitor thread has finished
[2025-11-25 00:37:51] 2025-11-24 23:36:59,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 00:37:51] 2025-11-24 23:36:59,622 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 00:37:51] 2025-11-24 23:36:59,647 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 00:37:51] 2025-11-24 23:36:59,762 | INFO     | [job] validate thread has finished
[2025-11-25 00:37:51] 2025-11-24 23:36:59,789 | INFO     | [payload] control thread has finished
[2025-11-25 00:37:51] 2025-11-24 23:36:59,833 | INFO     | [data] control thread has finished
[2025-11-25 00:37:51] 2025-11-24 23:37:00,165 | INFO     | [job] control thread has finished
[2025-11-25 00:37:51] 2025-11-24 23:37:00,205 | INFO     | [payload] validate_post thread has finished
[2025-11-25 00:37:51] 2025-11-24 23:37:00,259 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:37:51] 2025-11-24 23:37:00,554 | INFO     | [data] copytool_in thread has finished
[2025-11-25 00:37:51] 2025-11-24 23:37:01,265 | INFO     | [job] queue monitor thread has finished
[2025-11-25 00:37:51] 2025-11-24 23:37:01,605 | INFO     | [data] copytool_out thread has finished
[2025-11-25 00:37:51] 2025-11-24 23:37:03,656 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 00:37:51] 2025-11-24 23:37:27,377 | INFO     | PID=15902 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 00:37:51] 2025-11-24 23:37:27,377 | INFO     | .. there are 9 such processes running
[2025-11-25 00:37:51] 2025-11-24 23:37:27,378 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 00:37:51] 2025-11-24 23:37:27,379 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 00:37:51] 2025-11-24 23:37:27,379 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 00:37:51] 2025-11-24 23:37:40,372 | INFO     | [monitor] cgroup control has ended
[2025-11-25 00:37:51] 2025-11-24 23:37:41,229 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140718862579520)>', '<ExcThread(monitor, started 140718270039808)>']
[2025-11-25 00:37:51] 2025-11-24 23:37:41,464 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 00:37:51] 2025-11-24 23:37:41,465 | INFO     | [monitor] control thread has ended
[2025-11-25 00:37:51] 2025-11-24 23:37:46,255 | INFO     | all workflow threads have been joined
[2025-11-25 00:37:51] 2025-11-24 23:37:46,256 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 00:37:51] 2025-11-24 23:37:46,256 | INFO     | traces error code: 0
[2025-11-25 00:37:51] 2025-11-24 23:37:46,256 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 00:37:51] 2025-11-24 23:37:46,543 [wrapper] ==== pilot stdout END ====
[2025-11-25 00:37:51] 2025-11-24 23:37:46,634 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 00:37:51] 2025-11-24 23:37:46,735 [wrapper] pilotpid: 15902
[2025-11-25 00:37:51] 2025-11-24 23:37:46,832 [wrapper] Pilot exit status: 0
[2025-11-25 00:37:51] 2025-11-24 23:37:47,249 [wrapper] pandaids: 6893880828
[2025-11-25 00:37:51] 2025-11-24 23:37:48,323 [wrapper] cleanup supervisor_pilot  8915 15903
[2025-11-25 00:37:51] 2025-11-24 23:37:48,366 [wrapper] Test setup, not cleaning
[2025-11-25 00:37:51] 2025-11-24 23:37:48,407 [wrapper] apfmon messages muted
[2025-11-25 00:37:51] 2025-11-24 23:37:48,422 [wrapper] ==== wrapper stdout END ====
[2025-11-25 00:37:51] 2025-11-24 23:37:48,485 [wrapper] ==== wrapper stderr END ====
[2025-11-25 00:37:51]  *** Error codes and diagnostics ***
[2025-11-25 00:37:51]     "exeErrorCode": 0,
[2025-11-25 00:37:51]     "exeErrorDiag": "",
[2025-11-25 00:37:51]     "pilotErrorCode": 0,
[2025-11-25 00:37:51]     "pilotErrorDiag": "",
[2025-11-25 00:37:51]  *** Listing of results directory ***
[2025-11-25 00:37:51] total 1327496
[2025-11-25 00:37:51] -rw-r--r--. 1 boinc boinc    576529 Nov 20 20:10 pilot3.tar.gz
[2025-11-25 00:37:51] -rwx------. 1 boinc boinc     36292 Nov 20 20:40 runpilot2-wrapper.sh
[2025-11-25 00:37:51] -rw-r--r--. 1 boinc boinc      5112 Nov 20 20:40 queuedata.json
[2025-11-25 00:37:51] -rw-r--r--. 1 boinc boinc       100 Nov 24 02:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 00:37:51] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 02:07 run_atlas
[2025-11-25 00:37:51] -rw-r--r--. 1 boinc boinc       105 Nov 24 02:07 job.xml
[2025-11-25 00:37:51] -rw-r--r--. 2 boinc boinc 409916726 Nov 24 02:07 EVNT.47493127._000844.pool.root.1
[2025-11-25 00:37:51] -rw-r--r--. 1 boinc boinc      6392 Nov 24 02:07 init_data.xml
[2025-11-25 00:37:51] -rw-r--r--. 2 boinc boinc     15847 Nov 24 02:07 start_atlas.sh
[2025-11-25 00:37:51] drwxrwx--x. 2 boinc boinc        68 Nov 24 02:07 shared
[2025-11-25 00:37:51] -rw-r--r--. 2 boinc boinc    590097 Nov 24 02:07 input.tar.gz
[2025-11-25 00:37:51] -rw-r--r--. 1 boinc boinc         0 Nov 24 02:07 boinc_lockfile
[2025-11-25 00:37:51] -rw-r--r--. 1 boinc boinc      2785 Nov 24 02:07 pandaJob.out
[2025-11-25 00:37:51] -rw-------. 1 boinc boinc    989786 Nov 24 02:12 agis_schedconf.cvmfs.json
[2025-11-25 00:37:51] drwx------. 5 boinc boinc      4096 Nov 24 02:12 pilot3
[2025-11-25 00:37:51] -rw-r--r--. 1 boinc boinc       533 Nov 25 00:12 boinc_task_state.xml
[2025-11-25 00:37:51] -rw-------. 1 boinc boinc 919196871 Nov 25 00:33 HITS.47523449._008435.pool.root.1
[2025-11-25 00:37:51] -rw-------. 1 boinc boinc      1028 Nov 25 00:35 memory_monitor_summary.json
[2025-11-25 00:37:51] -rw-------. 1 boinc boinc   1516227 Nov 25 00:35 agis_ddmendpoints.agis.ALL.json
[2025-11-25 00:37:51] -rw-------. 1 boinc boinc   2427678 Nov 25 00:35 log.47523449._008435.job.log.tgz.1
[2025-11-25 00:37:51] -rw-------. 1 boinc boinc      8631 Nov 25 00:36 heartbeat.json
[2025-11-25 00:37:51] -rw-r--r--. 1 boinc boinc      8192 Nov 25 00:37 boinc_mmap_file
[2025-11-25 00:37:51] -rw-r--r--. 1 boinc boinc        29 Nov 25 00:37 wrapper_checkpoint.txt
[2025-11-25 00:37:51] -rw-------. 1 boinc boinc        95 Nov 25 00:37 pilot_heartbeat.json
[2025-11-25 00:37:51] -rw-------. 1 boinc boinc      4884 Nov 25 00:37 pilotlog.txt
[2025-11-25 00:37:51] -rw-------. 1 boinc boinc  10739903 Nov 25 00:37 log.47523449._008435.job.log.1
[2025-11-25 00:37:51] -rw-------. 1 boinc boinc       353 Nov 25 00:37 output.list
[2025-11-25 00:37:51] -rw-r--r--. 1 boinc boinc       620 Nov 25 00:37 runtime_log
[2025-11-25 00:37:51] -rw-------. 1 boinc boinc  13189120 Nov 25 00:37 result.tar.gz
[2025-11-25 00:37:51] -rw-r--r--. 1 boinc boinc      8817 Nov 25 00:37 runtime_log.err
[2025-11-25 00:37:51] -rw-------. 1 boinc boinc       662 Nov 25 00:37 D9dKDmLhPg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmC2GKDm9dLUPm.diag
[2025-11-25 00:37:51] -rw-r--r--. 1 boinc boinc     21462 Nov 25 00:37 stderr.txt
[2025-11-25 00:37:51] HITS file was successfully produced:
[2025-11-25 00:37:51] -rw-------. 1 boinc boinc 919196871 Nov 25 00:33 shared/HITS.pool.root.1
[2025-11-25 00:37:51]  *** Contents of shared directory: ***
[2025-11-25 00:37:51] total 1311444
[2025-11-25 00:37:51] -rw-r--r--. 2 boinc boinc 409916726 Nov 24 02:07 ATLAS.root_0
[2025-11-25 00:37:51] -rw-r--r--. 2 boinc boinc     15847 Nov 24 02:07 start_atlas.sh
[2025-11-25 00:37:51] -rw-r--r--. 2 boinc boinc    590097 Nov 24 02:07 input.tar.gz
[2025-11-25 00:37:51] -rw-------. 1 boinc boinc 919196871 Nov 25 00:33 HITS.pool.root.1
[2025-11-25 00:37:51] -rw-------. 1 boinc boinc  13189120 Nov 25 00:37 result.tar.gz
00:37:52 (12095): run_atlas exited; CPU time 339194.214825
00:37:52 (12095): called boinc_finish(0)

</stderr_txt>
]]>

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