Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:30:16 (2563224): wrapper (7.7.26015): starting
01:30:16 (2563224): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 01:30:16] Arguments: --nthreads 3
[2025-11-24 01:30:16] Threads: 3
[2025-11-24 01:30:16] Checking for CVMFS
[2025-11-24 01:30:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 01:30:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 01:30:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 01:30:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 01:30:16] 2.9.2.0 1559605 7482 86860 153227 1 81 36524631 36864001 0 130560 0 2749028 99.909 432754 6560 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 01:30:16] CVMFS is ok
[2025-11-24 01:30:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 01:30:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 01:30:16] Further information can be found at the LHC@home message board.
[2025-11-24 01:30:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 01:30:16] Checking for apptainer binary...
[2025-11-24 01:30:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 01:30:16] Running /usr/bin/apptainer --version
[2025-11-24 01:30:16] apptainer version 1.4.1-1.1
[2025-11-24 01:30:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 01:30:16] atlasA223
[2025-11-24 01:30:16] apptainer works
[2025-11-24 01:30:16] Set ATHENA_PROC_NUMBER=3
[2025-11-24 01:30:16] Set ATHENA_CORE_NUMBER=3
[2025-11-24 01:30:16] Starting ATLAS job with PandaID=6893879794
[2025-11-24 01:30:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 09:49:08]  *** The last 200 lines of the pilot log: ***
[2025-11-24 09:49:08] 2025-11-24 08:48:38,601 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 09:49:08] 2025-11-24 08:48:38,601 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 09:49:08] 2025-11-24 08:48:38,601 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 09:49:08] 2025-11-24 08:48:38,601 | INFO     | aborting loop
[2025-11-24 09:49:08] 2025-11-24 08:48:38,708 | INFO     | all payload control threads have been joined
[2025-11-24 09:49:08] 2025-11-24 08:48:39,238 | INFO     | all data control threads have been joined
[2025-11-24 09:49:08] 2025-11-24 08:48:39,564 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 09:49:08] 2025-11-24 08:48:39,606 | INFO     | [job] retrieve thread has finished
[2025-11-24 09:49:08] 2025-11-24 08:48:39,606 | INFO     | [job] job monitor thread has finished
[2025-11-24 09:49:08] 2025-11-24 08:48:39,607 | INFO     | [job] queue monitor thread has finished
[2025-11-24 09:49:08] 2025-11-24 08:48:39,684 | INFO     | [payload] failed_post thread has finished
[2025-11-24 09:49:08] 2025-11-24 08:48:39,714 | INFO     | [payload] control thread has finished
[2025-11-24 09:49:08] 2025-11-24 08:48:39,741 | INFO     | all job control threads have been joined
[2025-11-24 09:49:08] 2025-11-24 08:48:39,975 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 09:49:08] 2025-11-24 08:48:40,243 | INFO     | [data] control thread has finished
[2025-11-24 09:49:08] 2025-11-24 08:48:40,305 | INFO     | [data] copytool_in thread has finished
[2025-11-24 09:49:08] 2025-11-24 08:48:40,390 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 09:49:08] 2025-11-24 08:48:40,730 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 09:49:08] 2025-11-24 08:48:40,747 | INFO     | [job] control thread has finished
[2025-11-24 09:49:08] 2025-11-24 08:48:40,767 | INFO     | [job] validate thread has finished
[2025-11-24 09:49:08] 2025-11-24 08:48:40,978 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 09:49:08] 2025-11-24 08:48:41,020 | INFO     | [payload] validate_post thread has finished
[2025-11-24 09:49:08] 2025-11-24 08:48:41,570 | INFO     | [data] copytool_out thread has finished
[2025-11-24 09:49:08] 2025-11-24 08:48:43,978 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 09:49:08] 2025-11-24 08:48:49,511 | INFO     | job.realtimelogging is not enabled
[2025-11-24 09:49:08] 2025-11-24 08:48:50,513 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 09:49:08] 2025-11-24 08:48:56,697 | INFO     | [monitor] cgroup control has ended
[2025-11-24 09:49:08] 2025-11-24 08:48:56,926 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140319700080448)>', '<ExcThread(monitor, started 140318980691712)>']
[2025-11-24 09:49:08] 2025-11-24 08:49:01,944 | INFO     | all workflow threads have been joined
[2025-11-24 09:49:08] 2025-11-24 08:49:01,944 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 09:49:08] 2025-11-24 08:49:01,944 | INFO     | traces error code: 0
[2025-11-24 09:49:08] 2025-11-24 08:49:01,944 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 09:49:08] 2025-11-24 08:49:08,810 | INFO     | PID=2566951 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 09:49:08] 2025-11-24 08:49:08,811 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 09:49:08] 2025-11-24 08:49:08,811 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 09:49:08] 2025-11-24 08:49:08,811 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 09:49:08] 2025-11-24 08:49:08,811 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 09:49:08] 2025-11-24 08:49:08,811 | INFO     | [monitor] control thread has ended
[2025-11-24 09:49:08] 2025-11-24 08:49:08,857 [wrapper] ==== pilot stdout END ====
[2025-11-24 09:49:08] 2025-11-24 08:49:08,859 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 09:49:08] 2025-11-24 08:49:08,861 [wrapper] pilotpid: 2566951
[2025-11-24 09:49:08] 2025-11-24 08:49:08,864 [wrapper] Pilot exit status: 0
[2025-11-24 09:49:08] 2025-11-24 08:49:08,871 [wrapper] pandaids: 6893879794
[2025-11-24 09:49:08] 2025-11-24 08:49:08,887 [wrapper] cleanup supervisor_pilot 2625987 2566952
[2025-11-24 09:49:08] 2025-11-24 08:49:08,889 [wrapper] Test setup, not cleaning
[2025-11-24 09:49:08] 2025-11-24 08:49:08,892 [wrapper] apfmon messages muted
[2025-11-24 09:49:08] 2025-11-24 08:49:08,894 [wrapper] ==== wrapper stdout END ====
[2025-11-24 09:49:08] 2025-11-24 08:49:08,896 [wrapper] ==== wrapper stderr END ====
[2025-11-24 09:49:08]  *** Error codes and diagnostics ***
[2025-11-24 09:49:08]     "exeErrorCode": 0,
[2025-11-24 09:49:08]     "exeErrorDiag": "",
[2025-11-24 09:49:08]     "pilotErrorCode": 0,
[2025-11-24 09:49:08]     "pilotErrorDiag": "",
[2025-11-24 09:49:08]  *** Listing of results directory ***
[2025-11-24 09:49:08] total 1312328
[2025-11-24 09:49:08] -rw-r--r-- 1 boinc boinc    576529 Nov 20 20:10 pilot3.tar.gz
[2025-11-24 09:49:08] -rw-r--r-- 1 boinc boinc      5112 Nov 20 20:18 queuedata.json
[2025-11-24 09:49:08] -rwx------ 1 boinc boinc     36292 Nov 20 20:20 runpilot2-wrapper.sh
[2025-11-24 09:49:08] -rw-r--r-- 1 boinc boinc       100 Nov 24 01:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 09:49:08] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 01:30 run_atlas
[2025-11-24 09:49:08] -rw-r--r-- 1 boinc boinc       105 Nov 24 01:30 job.xml
[2025-11-24 09:49:08] -rw-r--r-- 2 boinc boinc 410626030 Nov 24 01:30 EVNT.47493127._000828.pool.root.1
[2025-11-24 09:49:08] -rw-r--r-- 2 boinc boinc    590100 Nov 24 01:30 input.tar.gz
[2025-11-24 09:49:08] -rw-r--r-- 2 boinc boinc     15847 Nov 24 01:30 start_atlas.sh
[2025-11-24 09:49:08] drwxrwx--x 2 boinc boinc      4096 Nov 24 01:30 shared
[2025-11-24 09:49:08] -rw-r--r-- 1 boinc boinc         0 Nov 24 01:30 boinc_setup_complete
[2025-11-24 09:49:08] -rw-r--r-- 1 boinc boinc      6446 Nov 24 01:30 init_data.xml
[2025-11-24 09:49:08] -rw-r--r-- 1 boinc boinc         0 Nov 24 01:30 boinc_lockfile
[2025-11-24 09:49:08] -rw-r--r-- 1 boinc boinc      2785 Nov 24 01:30 pandaJob.out
[2025-11-24 09:49:08] -rw------- 1 boinc boinc    989786 Nov 24 01:30 agis_schedconf.cvmfs.json
[2025-11-24 09:49:08] drwx------ 5 boinc boinc      4096 Nov 24 01:30 pilot3
[2025-11-24 09:49:08] -rw-r--r-- 1 boinc boinc       531 Nov 24 09:45 boinc_task_state.xml
[2025-11-24 09:49:08] -rw------- 1 boinc boinc 918539679 Nov 24 09:48 HITS.47523449._008273.pool.root.1
[2025-11-24 09:49:08] -rw------- 1 boinc boinc      1034 Nov 24 09:48 memory_monitor_summary.json
[2025-11-24 09:49:08] -rw------- 1 boinc boinc   1526164 Nov 24 09:48 agis_ddmendpoints.agis.ALL.json
[2025-11-24 09:49:08] -rw------- 1 boinc boinc   1172712 Nov 24 09:48 log.47523449._008273.job.log.tgz.1
[2025-11-24 09:49:08] -rw------- 1 boinc boinc      8566 Nov 24 09:48 heartbeat.json
[2025-11-24 09:49:08] -rw-r--r-- 1 boinc boinc      8192 Nov 24 09:49 boinc_mmap_file
[2025-11-24 09:49:08] -rw-r--r-- 1 boinc boinc        28 Nov 24 09:49 wrapper_checkpoint.txt
[2025-11-24 09:49:08] -rw------- 1 boinc boinc       747 Nov 24 09:49 pilotlog.txt
[2025-11-24 09:49:08] -rw------- 1 boinc boinc        95 Nov 24 09:49 pilot_heartbeat.json
[2025-11-24 09:49:08] -rw------- 1 boinc boinc   4206229 Nov 24 09:49 log.47523449._008273.job.log.1
[2025-11-24 09:49:08] -rw------- 1 boinc boinc       353 Nov 24 09:49 output.list
[2025-11-24 09:49:08] -rw-r--r-- 1 boinc boinc       620 Nov 24 09:49 runtime_log
[2025-11-24 09:49:08] -rw------- 1 boinc boinc   5396480 Nov 24 09:49 result.tar.gz
[2025-11-24 09:49:08] -rw------- 1 boinc boinc       668 Nov 24 09:49 tEgNDmWNPg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCRIKDmrmXFln.diag
[2025-11-24 09:49:08] -rw-r--r-- 1 boinc boinc      8913 Nov 24 09:49 runtime_log.err
[2025-11-24 09:49:08] -rw-r--r-- 1 boinc boinc      7433 Nov 24 09:49 stderr.txt
[2025-11-24 09:49:08] HITS file was successfully produced:
[2025-11-24 09:49:08] -rw------- 1 boinc boinc 918539679 Nov 24 09:48 shared/HITS.pool.root.1
[2025-11-24 09:49:08]  *** Contents of shared directory: ***
[2025-11-24 09:49:08] total 1303892
[2025-11-24 09:49:08] -rw-r--r-- 2 boinc boinc 410626030 Nov 24 01:30 ATLAS.root_0
[2025-11-24 09:49:08] -rw-r--r-- 2 boinc boinc    590100 Nov 24 01:30 input.tar.gz
[2025-11-24 09:49:08] -rw-r--r-- 2 boinc boinc     15847 Nov 24 01:30 start_atlas.sh
[2025-11-24 09:49:08] -rw------- 1 boinc boinc 918539679 Nov 24 09:48 HITS.pool.root.1
[2025-11-24 09:49:08] -rw------- 1 boinc boinc   5396480 Nov 24 09:49 result.tar.gz
09:49:10 (2563224): run_atlas exited; CPU time 88399.083449
09:49:10 (2563224): called boinc_finish(0)

</stderr_txt>
]]>

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