Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:53:06 (2389): wrapper (7.7.26015): starting
05:53:06 (2389): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 05:53:06] Arguments: --nthreads 8
[2025-11-24 05:53:06] Threads: 8
[2025-11-24 05:53:06] Checking for CVMFS
[2025-11-24 05:53:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 05:53:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 05:53:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 05:53:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 05:53:09] 2.11.2.0 30456 281869 141604 153233 0 236 15351823 25165824 4252 130560 3 119623357 99.868 78096923 3005 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 05:53:09] CVMFS is ok
[2025-11-24 05:53:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 05:53:09] Checking for apptainer binary...
[2025-11-24 05:53:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 05:53:09] Running /usr/bin/apptainer --version
[2025-11-24 05:53:09] apptainer version 1.3.2-1.el7
[2025-11-24 05:53:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 05:53:13] cg-vwn385.simple-grid.lan
[2025-11-24 05:53:13] apptainer works
[2025-11-24 05:53:13] Set ATHENA_PROC_NUMBER=8
[2025-11-24 05:53:13] Set ATHENA_CORE_NUMBER=8
[2025-11-24 05:53:13] Starting ATLAS job with PandaID=6893861428
[2025-11-24 05:53:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 04:57:07]  *** The last 200 lines of the pilot log: ***
[2025-11-25 04:57:07] 2025-11-25 03:56:13,910 | INFO     | time since job start (82780s) is within the limit (172800.0s)
[2025-11-25 04:57:07] 2025-11-25 03:56:15,579 | INFO     | monitor loop #5540: job 0:6893861428 is in state 'finished'
[2025-11-25 04:57:07] 2025-11-25 03:56:15,580 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 04:57:07] 2025-11-25 03:56:15,916 | INFO     | time since job start (82782s) is within the limit (172800.0s)
[2025-11-25 04:57:07] 2025-11-25 03:56:17,163 | INFO     | PID=6183 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 04:57:07] 2025-11-25 03:56:17,164 | INFO     | .. there are 9 such processes running
[2025-11-25 04:57:07] 2025-11-25 03:56:18,084 | INFO     | monitor loop #5541: job 0:6893861428 is in state 'finished'
[2025-11-25 04:57:07] 2025-11-25 03:56:18,085 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 04:57:07] 2025-11-25 03:56:18,164 | INFO     | time since job start (82785s) is within the limit (172800.0s)
[2025-11-25 04:57:07] 2025-11-25 03:56:20,173 | INFO     | time since job start (82787s) is within the limit (172800.0s)
[2025-11-25 04:57:07] 2025-11-25 03:56:20,589 | INFO     | monitor loop #5542: job 0:6893861428 is in state 'finished'
[2025-11-25 04:57:07] 2025-11-25 03:56:20,590 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 04:57:07] 2025-11-25 03:56:22,182 | INFO     | time since job start (82789s) is within the limit (172800.0s)
[2025-11-25 04:57:07] 2025-11-25 03:56:23,095 | INFO     | monitor loop #5543: job 0:6893861428 is in state 'finished'
[2025-11-25 04:57:07] 2025-11-25 03:56:23,096 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 04:57:07] 2025-11-25 03:56:24,188 | INFO     | time since job start (82791s) is within the limit (172800.0s)
[2025-11-25 04:57:07] 2025-11-25 03:56:24,877 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 04:57:07] 2025-11-25 03:56:24,878 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 04:57:07] 2025-11-25 03:56:24,880 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6893861428/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 04:57:07] 2025-11-25 03:56:24,881 | INFO     | extracted standard info from prmon json
[2025-11-25 04:57:07] 2025-11-25 03:56:24,881 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 04:57:07] 2025-11-25 03:56:24,881 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 04:57:07] 2025-11-25 03:56:24,914 | INFO     | fitting pss+swap vs Time
[2025-11-25 04:57:07] 2025-11-25 03:56:24,917 | INFO     | sum of square deviations: 761223859664.4276
[2025-11-25 04:57:07] 2025-11-25 03:56:24,995 | INFO     | sum of deviations: 1870350092669.76
[2025-11-25 04:57:07] 2025-11-25 03:56:24,996 | INFO     | mean x: 1764001725.1141586
[2025-11-25 04:57:07] 2025-11-25 03:56:24,996 | INFO     | mean y: 2864520.436619718
[2025-11-25 04:57:07] 2025-11-25 03:56:24,996 | INFO     | intersect: -4331341177.597232
[2025-11-25 04:57:07] 2025-11-25 03:56:24,998 | INFO     | chi2: 15.670971014960479
[2025-11-25 04:57:07] 2025-11-25 03:56:25,000 | INFO     | sum of square deviations: 752791304143.1901
[2025-11-25 04:57:07] 2025-11-25 03:56:25,057 | INFO     | sum of deviations: 2319340401473.013
[2025-11-25 04:57:07] 2025-11-25 03:56:25,058 | INFO     | mean x: 1764001572.6183035
[2025-11-25 04:57:07] 2025-11-25 03:56:25,058 | INFO     | mean y: 2872639.1540178573
[2025-11-25 04:57:07] 2025-11-25 03:56:25,058 | INFO     | intersect: -5431993695.137941
[2025-11-25 04:57:07] 2025-11-25 03:56:25,060 | INFO     | chi2: 12.439851059037764
[2025-11-25 04:57:07] 2025-11-25 03:56:25,060 | INFO     | current chi2=12.439851059037764 (change=20.618505087132686 %)
[2025-11-25 04:57:07] 2025-11-25 03:56:25,060 | INFO     | right removable region: 1343
[2025-11-25 04:57:07] 2025-11-25 03:56:25,062 | INFO     | sum of square deviations: 752790387313.1898
[2025-11-25 04:57:07] 2025-11-25 03:56:25,126 | INFO     | sum of deviations: 1440781831485.8599
[2025-11-25 04:57:07] 2025-11-25 03:56:25,127 | INFO     | mean x: 1764001877.6183035
[2025-11-25 04:57:07] 2025-11-25 03:56:25,127 | INFO     | mean y: 2872284.1927083335
[2025-11-25 04:57:07] 2025-11-25 03:56:25,127 | INFO     | intersect: -3373289126.4896193
[2025-11-25 04:57:07] 2025-11-25 03:56:25,129 | INFO     | chi2: 12.967391079071257
[2025-11-25 04:57:07] 2025-11-25 03:56:25,129 | INFO     | current chi2=12.967391079071257 (change=17.252153253989285 %)
[2025-11-25 04:57:07] 2025-11-25 03:56:25,129 | INFO     | left removable region: 10
[2025-11-25 04:57:07] 2025-11-25 03:56:25,131 | INFO     | sum of square deviations: 734458300387.5549
[2025-11-25 04:57:07] 2025-11-25 03:56:25,187 | INFO     | sum of deviations: 1879832972426.3237
[2025-11-25 04:57:07] 2025-11-25 03:56:25,187 | INFO     | mean x: 1764001847.1207802
[2025-11-25 04:57:07] 2025-11-25 03:56:25,188 | INFO     | mean y: 2884457.345836459
[2025-11-25 04:57:07] 2025-11-25 03:56:25,188 | INFO     | intersect: -4512046933.434005
[2025-11-25 04:57:07] 2025-11-25 03:56:25,190 | INFO     | chi2: 8.767685053724527
[2025-11-25 04:57:07] 2025-11-25 03:56:25,190 | INFO     | current memory leak: 2.56 B/s (using 1333 data points, chi2=8.77)
[2025-11-25 04:57:07] 2025-11-25 03:56:25,191 | INFO     | could have reported an average CPU frequency of 1999 MHz (45 samples)
[2025-11-25 04:57:07] 2025-11-25 03:56:25,192 | INFO     | ..............................
[2025-11-25 04:57:07] 2025-11-25 03:56:25,192 | INFO     | . Timing measurements:
[2025-11-25 04:57:07] 2025-11-25 03:56:25,192 | INFO     | . get job = 0 s
[2025-11-25 04:57:07] 2025-11-25 03:56:25,192 | INFO     | . initial setup = 5 s
[2025-11-25 04:57:07] 2025-11-25 03:56:25,192 | INFO     | . payload setup = 134 s
[2025-11-25 04:57:07] 2025-11-25 03:56:25,192 | INFO     | . stage-in = 0 s
[2025-11-25 04:57:07] 2025-11-25 03:56:25,192 | INFO     | . payload execution = 82347 s
[2025-11-25 04:57:07] 2025-11-25 03:56:25,193 | INFO     | . stage-out = 7 s
[2025-11-25 04:57:07] 2025-11-25 03:56:25,193 | INFO     | . log creation = 2 s
[2025-11-25 04:57:07] 2025-11-25 03:56:25,193 | INFO     | ..............................
[2025-11-25 04:57:07] 2025-11-25 03:56:25,473 | INFO     | 
[2025-11-25 04:57:07] 2025-11-25 03:56:25,474 | INFO     | job summary report
[2025-11-25 04:57:07] 2025-11-25 03:56:25,474 | INFO     | --------------------------------------------------
[2025-11-25 04:57:07] 2025-11-25 03:56:25,474 | INFO     | PanDA job id: 6893861428
[2025-11-25 04:57:07] 2025-11-25 03:56:25,474 | INFO     | task id: 47523449
[2025-11-25 04:57:07] 2025-11-25 03:56:25,474 | INFO     | errors: (none)
[2025-11-25 04:57:07] 2025-11-25 03:56:25,474 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 04:57:07] 2025-11-25 03:56:25,474 | INFO     | pilot state: finished 
[2025-11-25 04:57:07] 2025-11-25 03:56:25,475 | INFO     | transexitcode: 0
[2025-11-25 04:57:07] 2025-11-25 03:56:25,475 | INFO     | exeerrorcode: 0
[2025-11-25 04:57:07] 2025-11-25 03:56:25,475 | INFO     | exeerrordiag: 
[2025-11-25 04:57:07] 2025-11-25 03:56:25,475 | INFO     | exitcode: 0
[2025-11-25 04:57:07] 2025-11-25 03:56:25,475 | INFO     | exitmsg: OK
[2025-11-25 04:57:07] 2025-11-25 03:56:25,475 | INFO     | cpuconsumptiontime: 342723 s
[2025-11-25 04:57:07] 2025-11-25 03:56:25,475 | INFO     | nevents: 1000
[2025-11-25 04:57:07] 2025-11-25 03:56:25,475 | INFO     | neventsw: 0
[2025-11-25 04:57:07] 2025-11-25 03:56:25,475 | INFO     | pid: 12755
[2025-11-25 04:57:07] 2025-11-25 03:56:25,476 | INFO     | pgrp: 12755
[2025-11-25 04:57:07] 2025-11-25 03:56:25,476 | INFO     | corecount: 8
[2025-11-25 04:57:07] 2025-11-25 03:56:25,476 | INFO     | event service: False
[2025-11-25 04:57:07] 2025-11-25 03:56:25,476 | INFO     | sizes: {0: 2297979, 1: 2298836, 2: 2298836, 13: 2298864, 23: 2298920, 34: 2298948, 45: 2299104, 56: 2299132, 67: 2299160, 77: 2299188, 88: 2299244, 99: 2299552, 10
[2025-11-25 04:57:07] 2025-11-25 03:56:25,476 | INFO     | --------------------------------------------------
[2025-11-25 04:57:07] 2025-11-25 03:56:25,476 | INFO     | 
[2025-11-25 04:57:07] 2025-11-25 03:56:25,476 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-25 04:57:07] 2025-11-25 03:56:25,888 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,888 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,888 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,889 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,889 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,889 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,889 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,889 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,889 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,889 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,889 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,889 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,889 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,889 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,889 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,890 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,890 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,890 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 04:57:07] 2025-11-25 03:56:25,890 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,890 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 04:57:07] 2025-11-25 03:56:25,890 | INFO     | job 6893861428 has completed (purged errors)
[2025-11-25 04:57:07] 2025-11-25 03:56:25,890 | INFO     | overall cleanup function is called
[2025-11-25 04:57:07] 2025-11-25 03:56:26,912 | INFO     | --- collectZombieJob: --- 10, [12755]
[2025-11-25 04:57:07] 2025-11-25 03:56:26,913 | INFO     | zombie collector waiting for pid 12755
[2025-11-25 04:57:07] 2025-11-25 03:56:26,913 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 04:57:07] 2025-11-25 03:56:26,913 | INFO     | collected zombie processes
[2025-11-25 04:57:07] 2025-11-25 03:56:26,913 | INFO     | will attempt to kill all subprocesses of pid=12755
[2025-11-25 04:57:07] 2025-11-25 03:56:27,063 | INFO     | process IDs to be killed: [12755] (in reverse order)
[2025-11-25 04:57:07] 2025-11-25 03:56:28,112 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 04:57:07] 2025-11-25 03:56:28,112 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 04:57:07] 2025-11-25 03:56:28,115 | INFO     | did not find any defunct processes belonging to 12755
[2025-11-25 04:57:07] 2025-11-25 03:56:28,118 | INFO     | did not find any defunct processes belonging to 12755
[2025-11-25 04:57:07] 2025-11-25 03:56:28,120 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 04:57:07] 2025-11-25 03:56:28,121 | INFO     | ready for new job
[2025-11-25 04:57:07] 2025-11-25 03:56:28,121 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 04:57:07] 2025-11-25 03:56:28,126 | INFO     | ***************************************
[2025-11-25 04:57:07] 2025-11-25 03:56:28,127 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 04:57:07] 2025-11-25 03:56:28,127 | INFO     | ***************************************
[2025-11-25 04:57:07] 2025-11-25 03:56:28,127 | INFO     | 
[2025-11-25 04:57:07] 2025-11-25 03:56:28,128 | INFO     | pilot is running in a VM
[2025-11-25 04:57:07] 2025-11-25 03:56:28,128 | INFO     | architecture information:
[2025-11-25 04:57:07] 2025-11-25 03:56:28,128 | INFO     | executing command: cat /etc/os-release
[2025-11-25 04:57:07] 2025-11-25 03:56:28,145 | INFO     | cat /etc/os-release:
[2025-11-25 04:57:07] NAME="CentOS Linux"
[2025-11-25 04:57:07] VERSION="7 (Core)"
[2025-11-25 04:57:07] ID="centos"
[2025-11-25 04:57:07] ID_LIKE="rhel fedora"
[2025-11-25 04:57:07] VERSION_ID="7"
[2025-11-25 04:57:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 04:57:07] ANSI_COLOR="0;31"
[2025-11-25 04:57:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 04:57:07] HOME_URL="https://www.centos.org/"
[2025-11-25 04:57:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 04:57:07] 
[2025-11-25 04:57:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 04:57:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 04:57:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 04:57:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 04:57:07] 
[2025-11-25 04:57:07] 2025-11-25 03:56:28,146 | INFO     | ***************************************
[2025-11-25 04:57:07] 2025-11-25 03:56:28,650 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-25 04:57:07] 2025-11-25 03:56:28,875 | INFO     | sufficient remaining disk space (495121858560 B)
[2025-11-25 04:57:07] 2025-11-25 03:56:28,875 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 04:57:07] 2025-11-25 03:56:28,876 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 04:57:07] 2025-11-25 03:56:28,876 | INFO     | update_server=False
[2025-11-25 04:57:07] 2025-11-25 03:56:28,876 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 04:57:07] 2025-11-25 03:56:29,123 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:57:07] 2025-11-25 03:56:29,124 | INFO     | aborting loop
[2025-11-25 04:57:07] 2025-11-25 03:56:29,206 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 04:57:07] 2025-11-25 03:56:29,217 | INFO     | all data control threads have been joined
[2025-11-25 04:57:07] 2025-11-25 03:56:29,285 | INFO     | all payload control threads have been joined
[2025-11-25 04:57:07] 2025-11-25 03:56:29,419 | INFO     | all job control threads have been joined
[2025-11-25 04:57:07] 2025-11-25 03:56:29,825 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 04:57:07] 2025-11-25 03:56:29,883 | INFO     | [job] retrieve thread has finished
[2025-11-25 04:57:07] 2025-11-25 03:56:29,942 | INFO     | [job] validate thread has finished
[2025-11-25 04:57:07] 2025-11-25 03:56:30,100 | INFO     | [payload] failed_post thread has finished
[2025-11-25 04:57:07] 2025-11-25 03:56:30,129 | INFO     | [job] job monitor thread has finished
[2025-11-25 04:57:07] 2025-11-25 03:56:30,223 | INFO     | [data] control thread has finished
[2025-11-25 04:57:07] 2025-11-25 03:56:30,291 | INFO     | [payload] control thread has finished
[2025-11-25 04:57:07] 2025-11-25 03:56:30,361 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:57:07] 2025-11-25 03:56:30,425 | INFO     | [job] control thread has finished
[2025-11-25 04:57:07] 2025-11-25 03:56:30,594 | INFO     | [data] copytool_in thread has finished
[2025-11-25 04:57:07] 2025-11-25 03:56:30,878 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 04:57:07] 2025-11-25 03:56:31,029 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 04:57:07] 2025-11-25 03:56:31,120 | INFO     | [payload] validate_post thread has finished
[2025-11-25 04:57:07] 2025-11-25 03:56:31,265 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 04:57:07] 2025-11-25 03:56:31,333 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 04:57:07] 2025-11-25 03:56:31,367 | INFO     | [job] queue monitor thread has finished
[2025-11-25 04:57:07] 2025-11-25 03:56:31,832 | INFO     | [data] copytool_out thread has finished
[2025-11-25 04:57:07] 2025-11-25 03:56:33,215 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 04:57:07] 2025-11-25 03:56:56,988 | INFO     | [monitor] cgroup control has ended
[2025-11-25 04:57:07] 2025-11-25 03:56:57,432 | INFO     | PID=6183 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 04:57:07] 2025-11-25 03:56:57,433 | INFO     | .. there are 9 such processes running
[2025-11-25 04:57:07] 2025-11-25 03:56:57,433 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 04:57:07] 2025-11-25 03:56:57,433 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 04:57:07] 2025-11-25 03:56:57,433 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 04:57:07] 2025-11-25 03:56:57,678 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139865776334656)>', '<ExcThread(monitor, started 139865198946048)>']
[2025-11-25 04:57:07] 2025-11-25 03:56:58,438 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 04:57:07] 2025-11-25 03:56:58,439 | INFO     | [monitor] control thread has ended
[2025-11-25 04:57:07] 2025-11-25 03:57:02,704 | INFO     | all workflow threads have been joined
[2025-11-25 04:57:07] 2025-11-25 03:57:02,705 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 04:57:07] 2025-11-25 03:57:02,705 | INFO     | traces error code: 0
[2025-11-25 04:57:07] 2025-11-25 03:57:02,705 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 04:57:07] 2025-11-25 03:57:03,035 [wrapper] ==== pilot stdout END ====
[2025-11-25 04:57:07] 2025-11-25 03:57:03,133 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 04:57:07] 2025-11-25 03:57:03,239 [wrapper] pilotpid: 6183
[2025-11-25 04:57:07] 2025-11-25 03:57:03,329 [wrapper] Pilot exit status: 0
[2025-11-25 04:57:07] 2025-11-25 03:57:03,716 [wrapper] pandaids: 6893861428
[2025-11-25 04:57:07] 2025-11-25 03:57:04,253 [wrapper] cleanup supervisor_pilot 22735 6184
[2025-11-25 04:57:07] 2025-11-25 03:57:04,363 [wrapper] Test setup, not cleaning
[2025-11-25 04:57:07] 2025-11-25 03:57:04,444 [wrapper] apfmon messages muted
[2025-11-25 04:57:07] 2025-11-25 03:57:04,497 [wrapper] ==== wrapper stdout END ====
[2025-11-25 04:57:07] 2025-11-25 03:57:04,580 [wrapper] ==== wrapper stderr END ====
[2025-11-25 04:57:07]  *** Error codes and diagnostics ***
[2025-11-25 04:57:07]     "exeErrorCode": 0,
[2025-11-25 04:57:07]     "exeErrorDiag": "",
[2025-11-25 04:57:07]     "pilotErrorCode": 0,
[2025-11-25 04:57:07]     "pilotErrorDiag": "",
[2025-11-25 04:57:07]  *** Listing of results directory ***
[2025-11-25 04:57:07] total 1325676
[2025-11-25 04:57:07] -rw-r--r--. 1 boinc boinc    576529 Nov 20 14:50 pilot3.tar.gz
[2025-11-25 04:57:07] -rwx------. 1 boinc boinc     36292 Nov 20 14:54 runpilot2-wrapper.sh
[2025-11-25 04:57:07] -rw-r--r--. 1 boinc boinc      5112 Nov 20 14:54 queuedata.json
[2025-11-25 04:57:07] -rw-r--r--. 1 boinc boinc       100 Nov 24 05:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 04:57:07] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 05:53 run_atlas
[2025-11-25 04:57:07] -rw-r--r--. 1 boinc boinc       105 Nov 24 05:53 job.xml
[2025-11-25 04:57:07] -rw-r--r--. 1 boinc boinc      6393 Nov 24 05:53 init_data.xml
[2025-11-25 04:57:07] -rw-r--r--. 2 boinc boinc 408874893 Nov 24 05:53 EVNT.47493127._000566.pool.root.1
[2025-11-25 04:57:07] -rw-r--r--. 2 boinc boinc     15847 Nov 24 05:53 start_atlas.sh
[2025-11-25 04:57:07] drwxrwx--x. 2 boinc boinc        68 Nov 24 05:53 shared
[2025-11-25 04:57:07] -rw-r--r--. 2 boinc boinc    590101 Nov 24 05:53 input.tar.gz
[2025-11-25 04:57:07] -rw-r--r--. 1 boinc boinc         0 Nov 24 05:53 boinc_lockfile
[2025-11-25 04:57:07] -rw-r--r--. 1 boinc boinc      2786 Nov 24 05:53 pandaJob.out
[2025-11-25 04:57:07] -rw-------. 1 boinc boinc    989786 Nov 24 05:56 agis_schedconf.cvmfs.json
[2025-11-25 04:57:07] drwx------. 5 boinc boinc      4096 Nov 24 05:56 pilot3
[2025-11-25 04:57:07] -rw-r--r--. 1 boinc boinc       533 Nov 25 04:30 boinc_task_state.xml
[2025-11-25 04:57:07] -rw-------. 1 boinc boinc 917884323 Nov 25 04:53 HITS.47523449._005658.pool.root.1
[2025-11-25 04:57:07] -rw-------. 1 boinc boinc      1034 Nov 25 04:54 memory_monitor_summary.json
[2025-11-25 04:57:07] -rw-------. 1 boinc boinc   1516227 Nov 25 04:54 agis_ddmendpoints.agis.ALL.json
[2025-11-25 04:57:07] -rw-------. 1 boinc boinc   2434296 Nov 25 04:54 log.47523449._005658.job.log.tgz.1
[2025-11-25 04:57:07] -rw-------. 1 boinc boinc        95 Nov 25 04:56 pilot_heartbeat.json
[2025-11-25 04:57:07] -rw-------. 1 boinc boinc      8629 Nov 25 04:56 heartbeat.json
[2025-11-25 04:57:07] -rw-r--r--. 1 boinc boinc        29 Nov 25 04:56 wrapper_checkpoint.txt
[2025-11-25 04:57:07] -rw-r--r--. 1 boinc boinc      8192 Nov 25 04:56 boinc_mmap_file
[2025-11-25 04:57:07] -rw-------. 1 boinc boinc      4884 Nov 25 04:57 pilotlog.txt
[2025-11-25 04:57:07] -rw-------. 1 boinc boinc  10982076 Nov 25 04:57 log.47523449._005658.job.log.1
[2025-11-25 04:57:07] -rw-------. 1 boinc boinc       353 Nov 25 04:57 output.list
[2025-11-25 04:57:07] -rw-r--r--. 1 boinc boinc       620 Nov 25 04:57 runtime_log
[2025-11-25 04:57:07] -rw-------. 1 boinc boinc  13434880 Nov 25 04:57 result.tar.gz
[2025-11-25 04:57:07] -rw-------. 1 boinc boinc       662 Nov 25 04:57 VafMDmSIKg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAlGKDmybqFen.diag
[2025-11-25 04:57:07] -rw-r--r--. 1 boinc boinc      8833 Nov 25 04:57 runtime_log.err
[2025-11-25 04:57:07] -rw-r--r--. 1 boinc boinc     21506 Nov 25 04:57 stderr.txt
[2025-11-25 04:57:07] HITS file was successfully produced:
[2025-11-25 04:57:07] -rw-------. 1 boinc boinc 917884323 Nov 25 04:53 shared/HITS.pool.root.1
[2025-11-25 04:57:07]  *** Contents of shared directory: ***
[2025-11-25 04:57:07] total 1309380
[2025-11-25 04:57:07] -rw-r--r--. 2 boinc boinc 408874893 Nov 24 05:53 ATLAS.root_0
[2025-11-25 04:57:07] -rw-r--r--. 2 boinc boinc     15847 Nov 24 05:53 start_atlas.sh
[2025-11-25 04:57:07] -rw-r--r--. 2 boinc boinc    590101 Nov 24 05:53 input.tar.gz
[2025-11-25 04:57:07] -rw-------. 1 boinc boinc 917884323 Nov 25 04:53 HITS.pool.root.1
[2025-11-25 04:57:07] -rw-------. 1 boinc boinc  13434880 Nov 25 04:57 result.tar.gz
04:57:09 (2389): run_atlas exited; CPU time 343017.903989
04:57:09 (2389): called boinc_finish(0)

</stderr_txt>
]]>

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