Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:29:18 (3026235): wrapper (7.7.26015): starting
07:29:18 (3026235): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 07:29:18] Arguments: --nthreads 4
[2025-11-21 07:29:18] Threads: 4
[2025-11-21 07:29:18] Checking for CVMFS
[2025-11-21 07:29:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 07:29:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 07:29:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 07:29:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 07:29:18] 2.9.2.0 1896247 4471 88728 153110 0 90 33481468 36864001 0 130560 0 3253579 99.929 447984 6310 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 07:29:18] CVMFS is ok
[2025-11-21 07:29:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 07:29:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 07:29:18] Further information can be found at the LHC@home message board.
[2025-11-21 07:29:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 07:29:18] Checking for apptainer binary...
[2025-11-21 07:29:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 07:29:18] Running /usr/bin/apptainer --version
[2025-11-21 07:29:18] apptainer version 1.4.1-1.1
[2025-11-21 07:29:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 07:29:18] cosA131
[2025-11-21 07:29:18] apptainer works
[2025-11-21 07:29:18] Set ATHENA_PROC_NUMBER=4
[2025-11-21 07:29:18] Set ATHENA_CORE_NUMBER=4
[2025-11-21 07:29:18] Starting ATLAS job with PandaID=6893879608
[2025-11-21 07:29:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 07:39:33]  *** The last 200 lines of the pilot log: ***
[2025-11-21 07:39:33] 2025-11-21 06:38:33,472 | WARNING  | wrong length of table data, x=[1763706590.0, 1763706651.0, 1763706712.0, 1763706773.0, 1763706834.0, 1763706895.0, 1763706956.0], y=[1574.0, 833384.0, 1068570.0, 1
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | could have reported an average CPU frequency of 3686 MHz (4 samples)
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | ..............................
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . Timing measurements:
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . get job = 0 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . initial setup = 1 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . payload setup = 4 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . stage-in = 0 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . payload execution = 400 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . stage-out = 0 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . log creation = 0 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | ..............................
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6893879608/pilotlog.txt
[2025-11-21 07:39:33] 2025-11-21 06:38:33,488 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 07:39:33] - Log from pilotlog.txt -
[2025-11-21 07:39:33] 2025-11-21 06:38:33,469 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 07:39:33] 2025-11-21 06:38:33,470 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3189.1189375000004
[2025-11-21 07:39:33] 2025-11-21 06:38:33,472 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6893879608/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 07:39:33] 2025-11-21 06:38:33,472 | INFO     | extracted standard info from prmon json
[2025-11-21 07:39:33] 2025-11-21 06:38:33,472 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 07:39:33] 2025-11-21 06:38:33,472 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 07:39:33] 2025-11-21 06:38:33,472 | WARNING  | wrong length of table data, x=[1763706590.0, 1763706651.0, 1763706712.0, 1763706773.0, 1763706834.0, 1763706895.0, 1763706956.0], y=[1574.0, 833384.0, 1068570.0, 1
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | could have reported an average CPU frequency of 3686 MHz (4 samples)
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | ..............................
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . Timing measurements:
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . get job = 0 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . initial setup = 1 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . payload setup = 4 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . stage-in = 0 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . payload execution = 400 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . stage-out = 0 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . log creation = 0 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | ..............................
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6893879608/pilotlog.txt
[2025-11-21 07:39:33] 2025-11-21 06:38:33,488 | WARNING  | 
[2025-11-21 07:39:33] [begin log extracts]
[2025-11-21 07:39:33] - Log from pilotlog.txt -
[2025-11-21 07:39:33] 2025-11-21 06:38:33,469 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 07:39:33] 2025-11-21 06:38:33,470 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3189.1189375000004
[2025-11-21 07:39:33] 2025-11-21 06:38:33,472 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6893879608/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 07:39:33] 2025-11-21 06:38:33,472 | INFO     | extracted standard info from prmon json
[2025-11-21 07:39:33] 2025-11-21 06:38:33,472 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 07:39:33] 2025-11-21 06:38:33,472 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 07:39:33] 2025-11-21 06:38:33,472 | WARNING  | wrong length of table data, x=[1763706590.0, 1763706651.0, 1763706712.0, 1763706773.0, 1763706834.0, 1763706895.0, 1763706956.0], y=[1574.0, 833384.0, 1068570.0, 1
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | could have reported an average CPU frequency of 3686 MHz (4 samples)
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | ..............................
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . Timing measurements:
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . get job = 0 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . initial setup = 1 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . payload setup = 4 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . stage-in = 0 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . payload execution = 400 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . stage-out = 0 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | . log creation = 0 s
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | ..............................
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 07:39:33] 2025-11-21 06:38:33,473 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6893879608/pilotlog.txt
[2025-11-21 07:39:33] [end log extracts]
[2025-11-21 07:39:33] 2025-11-21 06:38:33,488 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 07:39:33] 2025-11-21 06:38:33,489 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 07:39:33] 2025-11-21 06:38:34,019 | INFO     | 
[2025-11-21 07:39:33] 2025-11-21 06:38:34,019 | INFO     | job summary report
[2025-11-21 07:39:33] 2025-11-21 06:38:34,019 | INFO     | --------------------------------------------------
[2025-11-21 07:39:33] 2025-11-21 06:38:34,019 | INFO     | PanDA job id: 6893879608
[2025-11-21 07:39:33] 2025-11-21 06:38:34,019 | INFO     | task id: 47523449
[2025-11-21 07:39:33] 2025-11-21 06:38:34,019 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 06:36:22,397 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 07:39:33] 2025-11-21 06:38:34,019 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 07:39:33] 2025-11-21 06:38:34,019 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 07:39:33] 2025-11-21 06:38:34,019 | INFO     | pilot state: failed 
[2025-11-21 07:39:33] 2025-11-21 06:38:34,019 | INFO     | transexitcode: 65
[2025-11-21 07:39:33] 2025-11-21 06:38:34,019 | INFO     | exeerrorcode: 65
[2025-11-21 07:39:33] 2025-11-21 06:38:34,019 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 1; Run: 284500; Evt: 144489002; Curre
[2025-11-21 07:39:33] 2025-11-21 06:38:34,020 | INFO     | exitcode: 65
[2025-11-21 07:39:33] 2025-11-21 06:38:34,020 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 1; Run: 284500; Evt: 144489002; Current al
[2025-11-21 07:39:33] 2025-11-21 06:38:34,020 | INFO     | cpuconsumptiontime: 90 s
[2025-11-21 07:39:33] 2025-11-21 06:38:34,020 | INFO     | nevents: 0
[2025-11-21 07:39:33] 2025-11-21 06:38:34,020 | INFO     | neventsw: 0
[2025-11-21 07:39:33] 2025-11-21 06:38:34,020 | INFO     | pid: 3036616
[2025-11-21 07:39:33] 2025-11-21 06:38:34,020 | INFO     | pgrp: 3036616
[2025-11-21 07:39:33] 2025-11-21 06:38:34,020 | INFO     | corecount: 4
[2025-11-21 07:39:33] 2025-11-21 06:38:34,020 | INFO     | event service: False
[2025-11-21 07:39:33] 2025-11-21 06:38:34,020 | INFO     | sizes: {0: 2298758, 3: 2299020, 10: 2299048, 408: 2323917, 409: 2323921, 410: 2328273, 411: 2328457, 532: 2328703}
[2025-11-21 07:39:33] 2025-11-21 06:38:34,020 | INFO     | --------------------------------------------------
[2025-11-21 07:39:33] 2025-11-21 06:38:34,020 | INFO     | 
[2025-11-21 07:39:33] 2025-11-21 06:38:34,020 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-21 07:39:33] 2025-11-21 06:38:34,042 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,042 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,042 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,042 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,042 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,042 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,042 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,042 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,042 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,042 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,042 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,043 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,043 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,043 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,043 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,043 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,043 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,043 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 07:39:33] 2025-11-21 06:38:34,043 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,043 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 07:39:33] 2025-11-21 06:38:34,043 | INFO     | job 6893879608 has completed (purged errors)
[2025-11-21 07:39:33] 2025-11-21 06:38:34,043 | INFO     | overall cleanup function is called
[2025-11-21 07:39:33] 2025-11-21 06:38:35,051 | INFO     | --- collectZombieJob: --- 10, [3036616]
[2025-11-21 07:39:33] 2025-11-21 06:38:35,051 | INFO     | zombie collector waiting for pid 3036616
[2025-11-21 07:39:33] 2025-11-21 06:38:35,052 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 07:39:33] 2025-11-21 06:38:35,052 | INFO     | collected zombie processes
[2025-11-21 07:39:33] 2025-11-21 06:38:35,052 | INFO     | will attempt to kill all subprocesses of pid=3036616
[2025-11-21 07:39:33] 2025-11-21 06:38:35,105 | INFO     | process IDs to be killed: [3036616] (in reverse order)
[2025-11-21 07:39:33] 2025-11-21 06:38:35,143 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 07:39:33] 2025-11-21 06:38:35,143 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 07:39:33] 2025-11-21 06:38:35,145 | INFO     | did not find any defunct processes belonging to 3036616
[2025-11-21 07:39:33] 2025-11-21 06:38:35,147 | INFO     | did not find any defunct processes belonging to 3036616
[2025-11-21 07:39:33] 2025-11-21 06:38:35,147 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 07:39:33] 2025-11-21 06:38:35,147 | INFO     | ready for new job
[2025-11-21 07:39:33] 2025-11-21 06:38:35,147 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 07:39:33] 2025-11-21 06:38:35,148 | INFO     | ***************************************
[2025-11-21 07:39:33] 2025-11-21 06:38:35,148 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 07:39:33] 2025-11-21 06:38:35,148 | INFO     | ***************************************
[2025-11-21 07:39:33] 2025-11-21 06:38:35,148 | INFO     | 
[2025-11-21 07:39:33] 2025-11-21 06:38:35,149 | INFO     | architecture information:
[2025-11-21 07:39:33] 2025-11-21 06:38:35,149 | INFO     | executing command: cat /etc/os-release
[2025-11-21 07:39:33] 2025-11-21 06:38:35,165 | INFO     | cat /etc/os-release:
[2025-11-21 07:39:33] NAME="CentOS Linux"
[2025-11-21 07:39:33] VERSION="7 (Core)"
[2025-11-21 07:39:33] ID="centos"
[2025-11-21 07:39:33] ID_LIKE="rhel fedora"
[2025-11-21 07:39:33] VERSION_ID="7"
[2025-11-21 07:39:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 07:39:33] ANSI_COLOR="0;31"
[2025-11-21 07:39:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 07:39:33] HOME_URL="https://www.centos.org/"
[2025-11-21 07:39:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 07:39:33] 
[2025-11-21 07:39:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 07:39:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 07:39:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 07:39:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 07:39:33] 
[2025-11-21 07:39:33] 2025-11-21 06:38:35,165 | INFO     | ***************************************
[2025-11-21 07:39:33] 2025-11-21 06:38:35,668 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-21 07:39:33] 2025-11-21 06:38:35,684 | INFO     | sufficient remaining disk space (326591578112 B)
[2025-11-21 07:39:33] 2025-11-21 06:38:35,684 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 07:39:33] 2025-11-21 06:38:35,684 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 07:39:33] 2025-11-21 06:38:35,684 | INFO     | update_server=False
[2025-11-21 07:39:33] 2025-11-21 06:38:35,684 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 07:39:33] 2025-11-21 06:38:35,684 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 07:39:33] 2025-11-21 06:38:36,019 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 07:39:33] 2025-11-21 06:38:36,020 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 07:39:33] 2025-11-21 06:38:36,020 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 07:39:33] 2025-11-21 06:38:36,020 | INFO     | will abort loop
[2025-11-21 07:39:33] 2025-11-21 06:38:36,037 | INFO     | all data control threads have been joined
[2025-11-21 07:39:33] 2025-11-21 06:38:36,690 | INFO     | [job] retrieve thread has finished
[2025-11-21 07:39:33] 2025-11-21 06:38:36,753 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 07:39:33] 2025-11-21 06:38:36,796 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 07:39:33] 2025-11-21 06:38:36,841 | INFO     | all payload control threads have been joined
[2025-11-21 07:39:33] 2025-11-21 06:38:36,930 | INFO     | all job control threads have been joined
[2025-11-21 07:39:33] 2025-11-21 06:38:37,025 | INFO     | [job] job monitor thread has finished
[2025-11-21 07:39:33] 2025-11-21 06:38:37,042 | INFO     | [data] control thread has finished
[2025-11-21 07:39:33] 2025-11-21 06:38:37,101 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 07:39:33] 2025-11-21 06:38:37,375 | INFO     | [data] copytool_in thread has finished
[2025-11-21 07:39:33] 2025-11-21 06:38:37,405 | INFO     | [payload] validate_post thread has finished
[2025-11-21 07:39:33] 2025-11-21 06:38:37,846 | INFO     | [payload] control thread has finished
[2025-11-21 07:39:33] 2025-11-21 06:38:37,936 | INFO     | [job] control thread has finished
[2025-11-21 07:39:33] 2025-11-21 06:38:37,948 | INFO     | [payload] failed_post thread has finished
[2025-11-21 07:39:33] 2025-11-21 06:38:38,051 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 07:39:33] 2025-11-21 06:38:38,085 | INFO     | [job] validate thread has finished
[2025-11-21 07:39:33] 2025-11-21 06:38:38,183 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 07:39:33] 2025-11-21 06:38:38,540 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 07:39:33] 2025-11-21 06:38:38,802 | INFO     | [data] copytool_out thread has finished
[2025-11-21 07:39:33] 2025-11-21 06:38:39,546 | INFO     | [job] queue monitor thread has finished
[2025-11-21 07:39:33] 2025-11-21 06:38:39,692 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 07:39:33] 2025-11-21 06:39:05,804 | INFO     | PID=3030031 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 07:39:33] 2025-11-21 06:39:05,804 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 07:39:33] 2025-11-21 06:39:05,804 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 07:39:33] 2025-11-21 06:39:05,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 07:39:33] 2025-11-21 06:39:27,059 | INFO     | [monitor] cgroup control has ended
[2025-11-21 07:39:33] 2025-11-21 06:39:28,684 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140712096261952)>', '<ExcThread(monitor, started 140711139714816)>']
[2025-11-21 07:39:33] 2025-11-21 06:39:28,926 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 07:39:33] 2025-11-21 06:39:28,927 | INFO     | [monitor] control thread has ended
[2025-11-21 07:39:33] 2025-11-21 06:39:33,710 | INFO     | all workflow threads have been joined
[2025-11-21 07:39:33] 2025-11-21 06:39:33,710 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 07:39:33] 2025-11-21 06:39:33,710 | INFO     | traces error code: 0
[2025-11-21 07:39:33] 2025-11-21 06:39:33,710 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 07:39:33] 2025-11-21 06:39:33,798 [wrapper] ==== pilot stdout END ====
[2025-11-21 07:39:33] 2025-11-21 06:39:33,802 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 07:39:33] 2025-11-21 06:39:33,806 [wrapper] pilotpid: 3030031
[2025-11-21 07:39:33] 2025-11-21 06:39:33,810 [wrapper] Pilot exit status: 0
[2025-11-21 07:39:33] 2025-11-21 06:39:33,821 [wrapper] pandaids: 6893879608
[2025-11-21 07:39:33] 2025-11-21 06:39:33,847 [wrapper] cleanup supervisor_pilot 3030037 3030032
[2025-11-21 07:39:33] 2025-11-21 06:39:33,851 [wrapper] Test setup, not cleaning
[2025-11-21 07:39:33] 2025-11-21 06:39:33,856 [wrapper] apfmon messages muted
[2025-11-21 07:39:33] 2025-11-21 06:39:33,859 [wrapper] ==== wrapper stdout END ====
[2025-11-21 07:39:33] 2025-11-21 06:39:33,864 [wrapper] ==== wrapper stderr END ====
[2025-11-21 07:39:33]  *** Error codes and diagnostics ***
[2025-11-21 07:39:33]     "exeErrorCode": 65,
[2025-11-21 07:39:33]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 1; Run: 284500; Evt: 144489002; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
[2025-11-21 07:39:33]     "pilotErrorCode": 1305,
[2025-11-21 07:39:33]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 1; Run: 284500; Evt: 144489002; Current algorit",
[2025-11-21 07:39:33]  *** Listing of results directory ***
[2025-11-21 07:39:33] total 403660
[2025-11-21 07:39:33] -rw-r--r-- 1 boinc boinc    576529 Nov 20 20:10 pilot3.tar.gz
[2025-11-21 07:39:33] -rw-r--r-- 1 boinc boinc      5112 Nov 20 20:15 queuedata.json
[2025-11-21 07:39:33] -rwx------ 1 boinc boinc     36292 Nov 20 20:16 runpilot2-wrapper.sh
[2025-11-21 07:39:33] -rw-r--r-- 1 boinc boinc       100 Nov 21 07:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 07:39:33] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 07:29 run_atlas
[2025-11-21 07:39:33] -rw-r--r-- 1 boinc boinc       105 Nov 21 07:29 job.xml
[2025-11-21 07:39:33] -rw-r--r-- 2 boinc boinc 408381458 Nov 21 07:29 EVNT.47493127._000820.pool.root.1
[2025-11-21 07:39:33] -rw-r--r-- 2 boinc boinc    590103 Nov 21 07:29 input.tar.gz
[2025-11-21 07:39:33] -rw-r--r-- 2 boinc boinc     15847 Nov 21 07:29 start_atlas.sh
[2025-11-21 07:39:33] drwxrwx--x 2 boinc boinc      4096 Nov 21 07:29 shared
[2025-11-21 07:39:33] -rw-r--r-- 1 boinc boinc         0 Nov 21 07:29 boinc_setup_complete
[2025-11-21 07:39:33] -rw-r--r-- 1 boinc boinc      6379 Nov 21 07:29 init_data.xml
[2025-11-21 07:39:33] -rw-r--r-- 1 boinc boinc         0 Nov 21 07:29 boinc_lockfile
[2025-11-21 07:39:33] -rw-r--r-- 1 boinc boinc      2784 Nov 21 07:29 pandaJob.out
[2025-11-21 07:39:33] -rw------- 1 boinc boinc    989817 Nov 21 07:29 agis_schedconf.cvmfs.json
[2025-11-21 07:39:33] -rw------- 1 boinc boinc   1526164 Nov 21 07:29 agis_ddmendpoints.agis.ALL.json
[2025-11-21 07:39:33] drwx------ 5 boinc boinc      4096 Nov 21 07:29 pilot3
[2025-11-21 07:39:33] -rw-r--r-- 1 boinc boinc       526 Nov 21 07:36 boinc_task_state.xml
[2025-11-21 07:39:33] -rw------- 1 boinc boinc      1000 Nov 21 07:36 memory_monitor_summary.json
[2025-11-21 07:39:33] -rw------- 1 boinc boinc    385164 Nov 21 07:36 log.47523449._008200.job.log.tgz.1
[2025-11-21 07:39:33] -rw------- 1 boinc boinc        95 Nov 21 07:38 pilot_heartbeat.json
[2025-11-21 07:39:33] -rw------- 1 boinc boinc      9558 Nov 21 07:38 heartbeat.json
[2025-11-21 07:39:33] -rw-r--r-- 1 boinc boinc      8192 Nov 21 07:39 boinc_mmap_file
[2025-11-21 07:39:33] -rw-r--r-- 1 boinc boinc        24 Nov 21 07:39 wrapper_checkpoint.txt
[2025-11-21 07:39:33] -rw------- 1 boinc boinc      4938 Nov 21 07:39 pilotlog.txt
[2025-11-21 07:39:33] -rw------- 1 boinc boinc    139179 Nov 21 07:39 log.47523449._008200.job.log.1
[2025-11-21 07:39:33] -rw------- 1 boinc boinc       186 Nov 21 07:39 output.list
[2025-11-21 07:39:33] -rw-r--r-- 1 boinc boinc       620 Nov 21 07:39 runtime_log
[2025-11-21 07:39:33] -rw------- 1 boinc boinc    542720 Nov 21 07:39 result.tar.gz
[2025-11-21 07:39:33] -rw-r--r-- 1 boinc boinc      8749 Nov 21 07:39 runtime_log.err
[2025-11-21 07:39:33] -rw------- 1 boinc boinc       651 Nov 21 07:39 lJQODmMKPg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsQIKDm5QWj8n.diag
[2025-11-21 07:39:33] -rw-r--r-- 1 boinc boinc     22776 Nov 21 07:39 stderr.txt
[2025-11-21 07:39:33] No HITS result produced
[2025-11-21 07:39:33]  *** Contents of shared directory: ***
[2025-11-21 07:39:33] total 399944
[2025-11-21 07:39:33] -rw-r--r-- 2 boinc boinc 408381458 Nov 21 07:29 ATLAS.root_0
[2025-11-21 07:39:33] -rw-r--r-- 2 boinc boinc    590103 Nov 21 07:29 input.tar.gz
[2025-11-21 07:39:33] -rw-r--r-- 2 boinc boinc     15847 Nov 21 07:29 start_atlas.sh
[2025-11-21 07:39:33] -rw------- 1 boinc boinc    542720 Nov 21 07:39 result.tar.gz
07:39:35 (3026235): run_atlas exited; CPU time 81.514709
07:39:35 (3026235): called boinc_finish(0)

</stderr_txt>
]]>

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