Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:16:45 (25715): wrapper (7.7.26015): starting
03:16:45 (25715): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:16:45] Arguments: --nthreads 8
[2025-11-24 03:16:45] Threads: 8
[2025-11-24 03:16:45] Checking for CVMFS
[2025-11-24 03:16:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:16:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:16:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:16:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:16:48] 2.11.2.0 13026 281843 138988 153228 0 85 21063641 25165824 4632 130560 2 137524572 99.885 76166198 3367 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 03:16:48] CVMFS is ok
[2025-11-24 03:16:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:16:48] Checking for apptainer binary...
[2025-11-24 03:16:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:16:48] Running /usr/bin/apptainer --version
[2025-11-24 03:16:48] apptainer version 1.3.2-1.el7
[2025-11-24 03:16:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:16:55] cg-vwn329.simple-grid.lan
[2025-11-24 03:16:55] apptainer works
[2025-11-24 03:16:55] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:16:55] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:16:55] Starting ATLAS job with PandaID=6893879760
[2025-11-24 03:16:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:28:58]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:28:58] 2025-11-25 00:27:50,317 | INFO     | time since job start (79639s) is within the limit (172800.0s)
[2025-11-25 01:28:58] 2025-11-25 00:27:51,432 | INFO     | monitor loop #5351: job 0:6893879760 is in state 'finished'
[2025-11-25 01:28:58] 2025-11-25 00:27:51,432 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:28:58] 2025-11-25 00:27:52,330 | INFO     | time since job start (79641s) is within the limit (172800.0s)
[2025-11-25 01:28:58] 2025-11-25 00:27:53,942 | INFO     | monitor loop #5352: job 0:6893879760 is in state 'finished'
[2025-11-25 01:28:58] 2025-11-25 00:27:53,942 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:28:58] 2025-11-25 00:27:54,339 | INFO     | time since job start (79643s) is within the limit (172800.0s)
[2025-11-25 01:28:58] 2025-11-25 00:27:56,350 | INFO     | time since job start (79645s) is within the limit (172800.0s)
[2025-11-25 01:28:58] 2025-11-25 00:27:56,456 | INFO     | monitor loop #5353: job 0:6893879760 is in state 'finished'
[2025-11-25 01:28:58] 2025-11-25 00:27:56,456 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:28:58] 2025-11-25 00:27:57,499 | INFO     | PID=29511 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 01:28:58] 2025-11-25 00:27:57,499 | INFO     | .. there are 2 such processes running
[2025-11-25 01:28:58] 2025-11-25 00:27:58,500 | INFO     | time since job start (79647s) is within the limit (172800.0s)
[2025-11-25 01:28:58] 2025-11-25 00:27:58,971 | INFO     | monitor loop #5354: job 0:6893879760 is in state 'finished'
[2025-11-25 01:28:58] 2025-11-25 00:27:58,971 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:28:58] 2025-11-25 00:27:59,670 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 01:28:58] 2025-11-25 00:27:59,671 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 01:28:58] 2025-11-25 00:27:59,673 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6893879760/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 01:28:58] 2025-11-25 00:27:59,674 | INFO     | extracted standard info from prmon json
[2025-11-25 01:28:58] 2025-11-25 00:27:59,674 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 01:28:58] 2025-11-25 00:27:59,674 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 01:28:58] 2025-11-25 00:27:59,701 | INFO     | fitting pss+swap vs Time
[2025-11-25 01:28:58] 2025-11-25 00:27:59,703 | INFO     | sum of square deviations: 673424111434.7648
[2025-11-25 01:28:58] 2025-11-25 00:27:59,762 | INFO     | sum of deviations: 2200699344830.5415
[2025-11-25 01:28:58] 2025-11-25 00:27:59,762 | INFO     | mean x: 1763990849.030888
[2025-11-25 01:28:58] 2025-11-25 00:27:59,762 | INFO     | mean y: 2821202.336679537
[2025-11-25 01:28:58] 2025-11-25 00:27:59,762 | INFO     | intersect: -5761768214.39584
[2025-11-25 01:28:58] 2025-11-25 00:27:59,764 | INFO     | chi2: 30.694186327585875
[2025-11-25 01:28:58] 2025-11-25 00:27:59,766 | INFO     | sum of square deviations: 665654335706.9302
[2025-11-25 01:28:58] 2025-11-25 00:27:59,821 | INFO     | sum of deviations: 2620999988604.519
[2025-11-25 01:28:58] 2025-11-25 00:27:59,821 | INFO     | mean x: 1763990696.5348837
[2025-11-25 01:28:58] 2025-11-25 00:27:59,821 | INFO     | mean y: 2829450.37751938
[2025-11-25 01:28:58] 2025-11-25 00:27:59,821 | INFO     | intersect: -6942846927.747922
[2025-11-25 01:28:58] 2025-11-25 00:27:59,823 | INFO     | chi2: 27.421421408553837
[2025-11-25 01:28:58] 2025-11-25 00:27:59,823 | INFO     | current chi2=27.421421408553837 (change=10.662491209583544 %)
[2025-11-25 01:28:58] 2025-11-25 00:27:59,823 | INFO     | right removable region: 1289
[2025-11-25 01:28:58] 2025-11-25 00:27:59,825 | INFO     | sum of square deviations: 665653521356.9304
[2025-11-25 01:28:58] 2025-11-25 00:27:59,876 | INFO     | sum of deviations: 1644775264949.862
[2025-11-25 01:28:58] 2025-11-25 00:27:59,877 | INFO     | mean x: 1763991001.5348837
[2025-11-25 01:28:58] 2025-11-25 00:27:59,877 | INFO     | mean y: 2832112.803100775
[2025-11-25 01:28:58] 2025-11-25 00:27:59,877 | INFO     | intersect: -4355844997.481375
[2025-11-25 01:28:58] 2025-11-25 00:27:59,879 | INFO     | chi2: 25.73211052320634
[2025-11-25 01:28:58] 2025-11-25 00:27:59,879 | INFO     | current chi2=25.73211052320634 (change=16.166174764893356 %)
[2025-11-25 01:28:58] 2025-11-25 00:27:59,879 | INFO     | left removable region: 10
[2025-11-25 01:28:58] 2025-11-25 00:27:59,881 | INFO     | sum of square deviations: 648770076917.5491
[2025-11-25 01:28:58] 2025-11-25 00:27:59,934 | INFO     | sum of deviations: 1684634826025.6921
[2025-11-25 01:28:58] 2025-11-25 00:27:59,934 | INFO     | mean x: 1763990971.0437841
[2025-11-25 01:28:58] 2025-11-25 00:27:59,935 | INFO     | mean y: 2851726.451915559
[2025-11-25 01:28:58] 2025-11-25 00:27:59,935 | INFO     | intersect: -4577631758.13534
[2025-11-25 01:28:58] 2025-11-25 00:27:59,937 | INFO     | chi2: 18.135158815592703
[2025-11-25 01:28:58] 2025-11-25 00:27:59,937 | INFO     | current memory leak: 2.60 B/s (using 1279 data points, chi2=18.14)
[2025-11-25 01:28:58] 2025-11-25 00:27:59,938 | INFO     | could have reported an average CPU frequency of 1999 MHz (44 samples)
[2025-11-25 01:28:58] 2025-11-25 00:27:59,939 | INFO     | ..............................
[2025-11-25 01:28:58] 2025-11-25 00:27:59,939 | INFO     | . Timing measurements:
[2025-11-25 01:28:58] 2025-11-25 00:27:59,939 | INFO     | . get job = 0 s
[2025-11-25 01:28:58] 2025-11-25 00:27:59,939 | INFO     | . initial setup = 10 s
[2025-11-25 01:28:58] 2025-11-25 00:27:59,939 | INFO     | . payload setup = 176 s
[2025-11-25 01:28:58] 2025-11-25 00:27:59,939 | INFO     | . stage-in = 0 s
[2025-11-25 01:28:58] 2025-11-25 00:27:59,939 | INFO     | . payload execution = 79152 s
[2025-11-25 01:28:58] 2025-11-25 00:27:59,940 | INFO     | . stage-out = 5 s
[2025-11-25 01:28:58] 2025-11-25 00:27:59,940 | INFO     | . log creation = 2 s
[2025-11-25 01:28:58] 2025-11-25 00:27:59,940 | INFO     | ..............................
[2025-11-25 01:28:58] 2025-11-25 00:28:00,088 | INFO     | 
[2025-11-25 01:28:58] 2025-11-25 00:28:00,089 | INFO     | job summary report
[2025-11-25 01:28:58] 2025-11-25 00:28:00,089 | INFO     | --------------------------------------------------
[2025-11-25 01:28:58] 2025-11-25 00:28:00,089 | INFO     | PanDA job id: 6893879760
[2025-11-25 01:28:58] 2025-11-25 00:28:00,089 | INFO     | task id: 47523449
[2025-11-25 01:28:58] 2025-11-25 00:28:00,089 | INFO     | errors: (none)
[2025-11-25 01:28:58] 2025-11-25 00:28:00,089 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 01:28:58] 2025-11-25 00:28:00,089 | INFO     | pilot state: finished 
[2025-11-25 01:28:58] 2025-11-25 00:28:00,089 | INFO     | transexitcode: 0
[2025-11-25 01:28:58] 2025-11-25 00:28:00,089 | INFO     | exeerrorcode: 0
[2025-11-25 01:28:58] 2025-11-25 00:28:00,089 | INFO     | exeerrordiag: 
[2025-11-25 01:28:58] 2025-11-25 00:28:00,089 | INFO     | exitcode: 0
[2025-11-25 01:28:58] 2025-11-25 00:28:00,090 | INFO     | exitmsg: OK
[2025-11-25 01:28:58] 2025-11-25 00:28:00,090 | INFO     | cpuconsumptiontime: 341935 s
[2025-11-25 01:28:58] 2025-11-25 00:28:00,090 | INFO     | nevents: 1000
[2025-11-25 01:28:58] 2025-11-25 00:28:00,090 | INFO     | neventsw: 0
[2025-11-25 01:28:58] 2025-11-25 00:28:00,090 | INFO     | pid: 3683
[2025-11-25 01:28:58] 2025-11-25 00:28:00,090 | INFO     | pgrp: 3683
[2025-11-25 01:28:58] 2025-11-25 00:28:00,090 | INFO     | corecount: 8
[2025-11-25 01:28:58] 2025-11-25 00:28:00,090 | INFO     | event service: False
[2025-11-25 01:28:58] 2025-11-25 00:28:00,090 | INFO     | sizes: {0: 2298529, 1: 2298784, 12: 2298784, 23: 2298812, 33: 2298840, 44: 2298896, 55: 2299052, 66: 2299080, 76: 2299108, 87: 2299164, 98: 2299192, 99: 2299762, 1
[2025-11-25 01:28:58] 2025-11-25 00:28:00,090 | INFO     | --------------------------------------------------
[2025-11-25 01:28:58] 2025-11-25 00:28:00,090 | INFO     | 
[2025-11-25 01:28:58] 2025-11-25 00:28:00,090 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-25 01:28:58] 2025-11-25 00:28:00,508 | INFO     | time since job start (79649s) is within the limit (172800.0s)
[2025-11-25 01:28:58] 2025-11-25 00:28:00,613 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,613 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,613 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,614 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,614 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,614 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,614 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,614 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,614 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,614 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,614 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,614 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,614 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,614 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,615 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,615 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,615 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,615 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 01:28:58] 2025-11-25 00:28:00,615 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,615 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 01:28:58] 2025-11-25 00:28:00,615 | INFO     | job 6893879760 has completed (purged errors)
[2025-11-25 01:28:58] 2025-11-25 00:28:00,615 | INFO     | overall cleanup function is called
[2025-11-25 01:28:58] 2025-11-25 00:28:01,639 | INFO     | --- collectZombieJob: --- 10, [3683]
[2025-11-25 01:28:58] 2025-11-25 00:28:01,640 | INFO     | zombie collector waiting for pid 3683
[2025-11-25 01:28:58] 2025-11-25 00:28:01,640 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 01:28:58] 2025-11-25 00:28:01,640 | INFO     | collected zombie processes
[2025-11-25 01:28:58] 2025-11-25 00:28:01,640 | INFO     | will attempt to kill all subprocesses of pid=3683
[2025-11-25 01:28:58] 2025-11-25 00:28:01,716 | INFO     | process IDs to be killed: [3683] (in reverse order)
[2025-11-25 01:28:58] 2025-11-25 00:28:01,849 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 01:28:58] 2025-11-25 00:28:01,849 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 01:28:58] 2025-11-25 00:28:01,852 | INFO     | did not find any defunct processes belonging to 3683
[2025-11-25 01:28:58] 2025-11-25 00:28:01,853 | INFO     | did not find any defunct processes belonging to 3683
[2025-11-25 01:28:58] 2025-11-25 00:28:01,855 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:28:58] 2025-11-25 00:28:01,856 | INFO     | ready for new job
[2025-11-25 01:28:58] 2025-11-25 00:28:01,856 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 01:28:58] 2025-11-25 00:28:01,861 | INFO     | ***************************************
[2025-11-25 01:28:58] 2025-11-25 00:28:01,861 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 01:28:58] 2025-11-25 00:28:01,861 | INFO     | ***************************************
[2025-11-25 01:28:58] 2025-11-25 00:28:01,862 | INFO     | 
[2025-11-25 01:28:58] 2025-11-25 00:28:01,862 | INFO     | pilot is running in a VM
[2025-11-25 01:28:58] 2025-11-25 00:28:01,862 | INFO     | architecture information:
[2025-11-25 01:28:58] 2025-11-25 00:28:01,863 | INFO     | executing command: cat /etc/os-release
[2025-11-25 01:28:58] 2025-11-25 00:28:01,880 | INFO     | cat /etc/os-release:
[2025-11-25 01:28:58] NAME="CentOS Linux"
[2025-11-25 01:28:58] VERSION="7 (Core)"
[2025-11-25 01:28:58] ID="centos"
[2025-11-25 01:28:58] ID_LIKE="rhel fedora"
[2025-11-25 01:28:58] VERSION_ID="7"
[2025-11-25 01:28:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 01:28:58] ANSI_COLOR="0;31"
[2025-11-25 01:28:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 01:28:58] HOME_URL="https://www.centos.org/"
[2025-11-25 01:28:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 01:28:58] 
[2025-11-25 01:28:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 01:28:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 01:28:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 01:28:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 01:28:58] 
[2025-11-25 01:28:58] 2025-11-25 00:28:01,880 | INFO     | ***************************************
[2025-11-25 01:28:58] 2025-11-25 00:28:02,384 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-25 01:28:58] 2025-11-25 00:28:02,552 | INFO     | sufficient remaining disk space (492934529024 B)
[2025-11-25 01:28:58] 2025-11-25 00:28:02,553 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 01:28:58] 2025-11-25 00:28:02,553 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:28:58] 2025-11-25 00:28:02,553 | INFO     | update_server=False
[2025-11-25 01:28:58] 2025-11-25 00:28:02,553 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:28:58] 2025-11-25 00:28:02,554 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:28:58] 2025-11-25 00:28:02,554 | INFO     | aborting loop
[2025-11-25 01:28:58] 2025-11-25 00:28:02,815 | INFO     | all job control threads have been joined
[2025-11-25 01:28:58] 2025-11-25 00:28:03,029 | INFO     | all payload control threads have been joined
[2025-11-25 01:28:58] 2025-11-25 00:28:03,054 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:28:58] 2025-11-25 00:28:03,312 | INFO     | all data control threads have been joined
[2025-11-25 01:28:58] 2025-11-25 00:28:03,559 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:28:58] 2025-11-25 00:28:03,560 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:28:58] 2025-11-25 00:28:03,561 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:28:58] 2025-11-25 00:28:03,822 | INFO     | [job] control thread has finished
[2025-11-25 01:28:58] 2025-11-25 00:28:03,939 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:28:58] 2025-11-25 00:28:03,967 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:28:58] 2025-11-25 00:28:04,035 | INFO     | [payload] control thread has finished
[2025-11-25 01:28:58] 2025-11-25 00:28:04,045 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:28:58] 2025-11-25 00:28:04,067 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:28:58] 2025-11-25 00:28:04,318 | INFO     | [data] control thread has finished
[2025-11-25 01:28:58] 2025-11-25 00:28:04,671 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:28:58] 2025-11-25 00:28:04,810 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:28:58] 2025-11-25 00:28:04,875 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:28:58] 2025-11-25 00:28:04,948 | INFO     | [job] validate thread has finished
[2025-11-25 01:28:58] 2025-11-25 00:28:05,061 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:28:58] 2025-11-25 00:28:05,102 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:28:58] 2025-11-25 00:28:06,108 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:28:58] 2025-11-25 00:28:07,948 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:28:58] 2025-11-25 00:28:33,715 | INFO     | PID=29511 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 01:28:58] 2025-11-25 00:28:33,715 | INFO     | .. there are 2 such processes running
[2025-11-25 01:28:58] 2025-11-25 00:28:33,717 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:28:58] 2025-11-25 00:28:33,717 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:28:58] 2025-11-25 00:28:33,717 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:28:58] 2025-11-25 00:28:49,975 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:28:58] 2025-11-25 00:28:50,591 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140588513421120)>', '<ExcThread(monitor, started 140588213061376)>']
[2025-11-25 01:28:58] 2025-11-25 00:28:50,817 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:28:58] 2025-11-25 00:28:50,818 | INFO     | [monitor] control thread has ended
[2025-11-25 01:28:58] 2025-11-25 00:28:55,623 | INFO     | all workflow threads have been joined
[2025-11-25 01:28:58] 2025-11-25 00:28:55,623 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:28:58] 2025-11-25 00:28:55,623 | INFO     | traces error code: 0
[2025-11-25 01:28:58] 2025-11-25 00:28:55,624 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:28:58] 2025-11-25 00:28:56,039 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:28:58] 2025-11-25 00:28:56,144 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:28:58] 2025-11-25 00:28:56,238 [wrapper] pilotpid: 29511
[2025-11-25 01:28:58] 2025-11-25 00:28:56,341 [wrapper] Pilot exit status: 0
[2025-11-25 01:28:58] 2025-11-25 00:28:56,676 [wrapper] pandaids: 6893879760
[2025-11-25 01:28:58] 2025-11-25 00:28:57,484 [wrapper] cleanup supervisor_pilot  1026 29512
[2025-11-25 01:28:58] 2025-11-25 00:28:57,495 [wrapper] Test setup, not cleaning
[2025-11-25 01:28:58] 2025-11-25 00:28:57,502 [wrapper] apfmon messages muted
[2025-11-25 01:28:58] 2025-11-25 00:28:57,513 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:28:58] 2025-11-25 00:28:57,524 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:28:58]  *** Error codes and diagnostics ***
[2025-11-25 01:28:58]     "exeErrorCode": 0,
[2025-11-25 01:28:58]     "exeErrorDiag": "",
[2025-11-25 01:28:58]     "pilotErrorCode": 0,
[2025-11-25 01:28:58]     "pilotErrorDiag": "",
[2025-11-25 01:28:58]  *** Listing of results directory ***
[2025-11-25 01:28:58] total 1332104
[2025-11-25 01:28:58] -rw-r--r--. 1 boinc boinc    576529 Nov 20 20:10 pilot3.tar.gz
[2025-11-25 01:28:58] -rw-r--r--. 1 boinc boinc      5112 Nov 20 20:18 queuedata.json
[2025-11-25 01:28:58] -rwx------. 1 boinc boinc     36292 Nov 20 20:19 runpilot2-wrapper.sh
[2025-11-25 01:28:58] -rw-r--r--. 1 boinc boinc       100 Nov 24 03:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:28:58] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 03:16 run_atlas
[2025-11-25 01:28:58] -rw-r--r--. 1 boinc boinc       105 Nov 24 03:16 job.xml
[2025-11-25 01:28:58] -rw-r--r--. 1 boinc boinc      6391 Nov 24 03:16 init_data.xml
[2025-11-25 01:28:58] -rw-r--r--. 2 boinc boinc 408834212 Nov 24 03:16 EVNT.47493127._000824.pool.root.1
[2025-11-25 01:28:58] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:16 start_atlas.sh
[2025-11-25 01:28:58] drwxrwx--x. 2 boinc boinc        68 Nov 24 03:16 shared
[2025-11-25 01:28:58] -rw-r--r--. 2 boinc boinc    590105 Nov 24 03:16 input.tar.gz
[2025-11-25 01:28:58] -rw-r--r--. 1 boinc boinc         0 Nov 24 03:16 boinc_lockfile
[2025-11-25 01:28:58] -rw-r--r--. 1 boinc boinc      2785 Nov 24 03:16 pandaJob.out
[2025-11-25 01:28:58] -rw-------. 1 boinc boinc    989786 Nov 24 03:20 agis_schedconf.cvmfs.json
[2025-11-25 01:28:58] drwx------. 5 boinc boinc      4096 Nov 24 03:20 pilot3
[2025-11-25 01:28:58] -rw-r--r--. 1 boinc boinc       533 Nov 25 00:53 boinc_task_state.xml
[2025-11-25 01:28:58] -rw-------. 1 boinc boinc 925367411 Nov 25 01:24 HITS.47523449._008239.pool.root.1
[2025-11-25 01:28:58] -rw-------. 1 boinc boinc      1033 Nov 25 01:26 memory_monitor_summary.json
[2025-11-25 01:28:58] -rw-------. 1 boinc boinc   1516227 Nov 25 01:26 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:28:58] -rw-------. 1 boinc boinc   2409742 Nov 25 01:26 log.47523449._008239.job.log.tgz.1
[2025-11-25 01:28:58] -rw-------. 1 boinc boinc      8630 Nov 25 01:27 heartbeat.json
[2025-11-25 01:28:58] -rw-r--r--. 1 boinc boinc      8192 Nov 25 01:28 boinc_mmap_file
[2025-11-25 01:28:58] -rw-r--r--. 1 boinc boinc        29 Nov 25 01:28 wrapper_checkpoint.txt
[2025-11-25 01:28:58] -rw-------. 1 boinc boinc        95 Nov 25 01:28 pilot_heartbeat.json
[2025-11-25 01:28:58] -rw-------. 1 boinc boinc      4884 Nov 25 01:28 pilotlog.txt
[2025-11-25 01:28:58] -rw-------. 1 boinc boinc  10577521 Nov 25 01:28 log.47523449._008239.job.log.1
[2025-11-25 01:28:58] -rw-------. 1 boinc boinc       353 Nov 25 01:28 output.list
[2025-11-25 01:28:58] -rw-r--r--. 1 boinc boinc       620 Nov 25 01:28 runtime_log
[2025-11-25 01:28:58] -rw-------. 1 boinc boinc  13004800 Nov 25 01:28 result.tar.gz
[2025-11-25 01:28:58] -rw-r--r--. 1 boinc boinc      8817 Nov 25 01:28 runtime_log.err
[2025-11-25 01:28:58] -rw-------. 1 boinc boinc       662 Nov 25 01:28 FuZNDmvMPg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmC0GKDmv1QTHm.diag
[2025-11-25 01:28:58] -rw-r--r--. 1 boinc boinc     21492 Nov 25 01:28 stderr.txt
[2025-11-25 01:28:58] HITS file was successfully produced:
[2025-11-25 01:28:58] -rw-------. 1 boinc boinc 925367411 Nov 25 01:24 shared/HITS.pool.root.1
[2025-11-25 01:28:58]  *** Contents of shared directory: ***
[2025-11-25 01:28:58] total 1316232
[2025-11-25 01:28:58] -rw-r--r--. 2 boinc boinc 408834212 Nov 24 03:16 ATLAS.root_0
[2025-11-25 01:28:58] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:16 start_atlas.sh
[2025-11-25 01:28:58] -rw-r--r--. 2 boinc boinc    590105 Nov 24 03:16 input.tar.gz
[2025-11-25 01:28:58] -rw-------. 1 boinc boinc 925367411 Nov 25 01:24 HITS.pool.root.1
[2025-11-25 01:28:58] -rw-------. 1 boinc boinc  13004800 Nov 25 01:28 result.tar.gz
01:28:59 (25715): run_atlas exited; CPU time 342229.847406
01:28:59 (25715): called boinc_finish(0)

</stderr_txt>
]]>

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