Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:41:27 (23343): wrapper (7.7.26015): starting
03:41:27 (23343): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:41:27] Arguments: --nthreads 8
[2025-11-24 03:41:27] Threads: 8
[2025-11-24 03:41:27] Checking for CVMFS
[2025-11-24 03:41:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:41:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:41:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:41:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:41:29] 2.11.2.0 31287 186689 141208 153229 3 85 22240700 25165825 4632 130560 2 64343437 99.882 33825051 2355 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 03:41:29] CVMFS is ok
[2025-11-24 03:41:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:41:30] Checking for apptainer binary...
[2025-11-24 03:41:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:41:30] Running /usr/bin/apptainer --version
[2025-11-24 03:41:30] apptainer version 1.3.2-1.el7
[2025-11-24 03:41:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:41:39] cg-vwn426.simple-grid.lan
[2025-11-24 03:41:39] apptainer works
[2025-11-24 03:41:39] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:41:39] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:41:39] Starting ATLAS job with PandaID=6893862613
[2025-11-24 03:41:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:18:16]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:18:16] 2025-11-25 00:17:28,398 | INFO     | monitor loop #5187: job 0:6893862613 is in state 'finished'
[2025-11-25 01:18:16] 2025-11-25 00:17:28,398 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:18:16] 2025-11-25 00:17:30,395 | INFO     | time since job start (77508s) is within the limit (172800.0s)
[2025-11-25 01:18:16] 2025-11-25 00:17:30,909 | INFO     | monitor loop #5188: job 0:6893862613 is in state 'finished'
[2025-11-25 01:18:16] 2025-11-25 00:17:30,909 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:18:16] 2025-11-25 00:17:32,402 | INFO     | time since job start (77510s) is within the limit (172800.0s)
[2025-11-25 01:18:16] 2025-11-25 00:17:33,420 | INFO     | monitor loop #5189: job 0:6893862613 is in state 'finished'
[2025-11-25 01:18:16] 2025-11-25 00:17:33,420 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:18:16] 2025-11-25 00:17:34,409 | INFO     | time since job start (77512s) is within the limit (172800.0s)
[2025-11-25 01:18:16] 2025-11-25 00:17:35,925 | INFO     | monitor loop #5190: job 0:6893862613 is in state 'finished'
[2025-11-25 01:18:16] 2025-11-25 00:17:35,925 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:18:16] 2025-11-25 00:17:36,416 | INFO     | time since job start (77514s) is within the limit (172800.0s)
[2025-11-25 01:18:16] 2025-11-25 00:17:38,160 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 01:18:16] 2025-11-25 00:17:38,161 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 01:18:16] 2025-11-25 00:17:38,163 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6893862613/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 01:18:16] 2025-11-25 00:17:38,164 | INFO     | extracted standard info from prmon json
[2025-11-25 01:18:16] 2025-11-25 00:17:38,164 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 01:18:16] 2025-11-25 00:17:38,164 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 01:18:16] 2025-11-25 00:17:38,203 | INFO     | fitting pss+swap vs Time
[2025-11-25 01:18:16] 2025-11-25 00:17:38,205 | INFO     | sum of square deviations: 620288375840.9042
[2025-11-25 01:18:16] 2025-11-25 00:17:38,268 | INFO     | sum of deviations: 2822560878686.5757
[2025-11-25 01:18:16] 2025-11-25 00:17:38,269 | INFO     | mean x: 1763991310.5801587
[2025-11-25 01:18:16] 2025-11-25 00:17:38,269 | INFO     | mean y: 2828023.1428571427
[2025-11-25 01:18:16] 2025-11-25 00:17:38,269 | INFO     | intersect: -8024039894.278277
[2025-11-25 01:18:16] 2025-11-25 00:17:38,270 | INFO     | chi2: 27.149470589784592
[2025-11-25 01:18:16] 2025-11-25 00:17:38,272 | INFO     | sum of square deviations: 612933732105.0482
[2025-11-25 01:18:16] 2025-11-25 00:17:38,336 | INFO     | sum of deviations: 3221987373322.1587
[2025-11-25 01:18:16] 2025-11-25 00:17:38,336 | INFO     | mean x: 1763991158.0844622
[2025-11-25 01:18:16] 2025-11-25 00:17:38,336 | INFO     | mean y: 2836304.53625498
[2025-11-25 01:18:16] 2025-11-25 00:17:38,336 | INFO     | intersect: -9269874496.48389
[2025-11-25 01:18:16] 2025-11-25 00:17:38,338 | INFO     | chi2: 24.112879788093107
[2025-11-25 01:18:16] 2025-11-25 00:17:38,338 | INFO     | current chi2=24.112879788093107 (change=11.184714602995054 %)
[2025-11-25 01:18:16] 2025-11-25 00:17:38,338 | INFO     | right removable region: 1254
[2025-11-25 01:18:16] 2025-11-25 00:17:38,340 | INFO     | sum of square deviations: 612932901895.0482
[2025-11-25 01:18:16] 2025-11-25 00:17:38,380 | INFO     | sum of deviations: 2302135422472.1304
[2025-11-25 01:18:16] 2025-11-25 00:17:38,381 | INFO     | mean x: 1763991463.0844622
[2025-11-25 01:18:16] 2025-11-25 00:17:38,381 | INFO     | mean y: 2838812.432669323
[2025-11-25 01:18:16] 2025-11-25 00:17:38,381 | INFO     | intersect: -6622596401.682384
[2025-11-25 01:18:16] 2025-11-25 00:17:38,383 | INFO     | chi2: 22.521070141467476
[2025-11-25 01:18:16] 2025-11-25 00:17:38,383 | INFO     | current chi2=22.521070141467476 (change=17.047847887165148 %)
[2025-11-25 01:18:16] 2025-11-25 00:17:38,383 | INFO     | left removable region: 10
[2025-11-25 01:18:16] 2025-11-25 00:17:38,384 | INFO     | sum of square deviations: 596957001637.9918
[2025-11-25 01:18:16] 2025-11-25 00:17:38,425 | INFO     | sum of deviations: 2347046553579.281
[2025-11-25 01:18:16] 2025-11-25 00:17:38,425 | INFO     | mean x: 1763991432.5940514
[2025-11-25 01:18:16] 2025-11-25 00:17:38,425 | INFO     | mean y: 2858403.4975884245
[2025-11-25 01:18:16] 2025-11-25 00:17:38,425 | INFO     | intersect: -6932599261.046128
[2025-11-25 01:18:16] 2025-11-25 00:17:38,427 | INFO     | chi2: 15.432475796589747
[2025-11-25 01:18:16] 2025-11-25 00:17:38,427 | INFO     | current memory leak: 3.93 B/s (using 1244 data points, chi2=15.43)
[2025-11-25 01:18:16] 2025-11-25 00:17:38,429 | INFO     | could have reported an average CPU frequency of 1999 MHz (43 samples)
[2025-11-25 01:18:16] 2025-11-25 00:17:38,429 | INFO     | ..............................
[2025-11-25 01:18:16] 2025-11-25 00:17:38,429 | INFO     | . Timing measurements:
[2025-11-25 01:18:16] 2025-11-25 00:17:38,429 | INFO     | . get job = 0 s
[2025-11-25 01:18:16] 2025-11-25 00:17:38,429 | INFO     | . initial setup = 11 s
[2025-11-25 01:18:16] 2025-11-25 00:17:38,429 | INFO     | . payload setup = 191 s
[2025-11-25 01:18:16] 2025-11-25 00:17:38,430 | INFO     | . stage-in = 0 s
[2025-11-25 01:18:16] 2025-11-25 00:17:38,430 | INFO     | . payload execution = 77009 s
[2025-11-25 01:18:16] 2025-11-25 00:17:38,430 | INFO     | . stage-out = 5 s
[2025-11-25 01:18:16] 2025-11-25 00:17:38,430 | INFO     | . log creation = 2 s
[2025-11-25 01:18:16] 2025-11-25 00:17:38,430 | INFO     | ..............................
[2025-11-25 01:18:16] 2025-11-25 00:17:38,457 | INFO     | time since job start (77516s) is within the limit (172800.0s)
[2025-11-25 01:18:16] 2025-11-25 00:17:38,544 | INFO     | 
[2025-11-25 01:18:16] 2025-11-25 00:17:38,545 | INFO     | job summary report
[2025-11-25 01:18:16] 2025-11-25 00:17:38,545 | INFO     | --------------------------------------------------
[2025-11-25 01:18:16] 2025-11-25 00:17:38,545 | INFO     | PanDA job id: 6893862613
[2025-11-25 01:18:16] 2025-11-25 00:17:38,545 | INFO     | task id: 47523449
[2025-11-25 01:18:16] 2025-11-25 00:17:38,545 | INFO     | errors: (none)
[2025-11-25 01:18:16] 2025-11-25 00:17:38,545 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 01:18:16] 2025-11-25 00:17:38,545 | INFO     | pilot state: finished 
[2025-11-25 01:18:16] 2025-11-25 00:17:38,545 | INFO     | transexitcode: 0
[2025-11-25 01:18:16] 2025-11-25 00:17:38,545 | INFO     | exeerrorcode: 0
[2025-11-25 01:18:16] 2025-11-25 00:17:38,545 | INFO     | exeerrordiag: 
[2025-11-25 01:18:16] 2025-11-25 00:17:38,545 | INFO     | exitcode: 0
[2025-11-25 01:18:16] 2025-11-25 00:17:38,546 | INFO     | exitmsg: OK
[2025-11-25 01:18:16] 2025-11-25 00:17:38,546 | INFO     | cpuconsumptiontime: 339655 s
[2025-11-25 01:18:16] 2025-11-25 00:17:38,546 | INFO     | nevents: 1000
[2025-11-25 01:18:16] 2025-11-25 00:17:38,546 | INFO     | neventsw: 0
[2025-11-25 01:18:16] 2025-11-25 00:17:38,546 | INFO     | pid: 1304
[2025-11-25 01:18:16] 2025-11-25 00:17:38,546 | INFO     | pgrp: 1304
[2025-11-25 01:18:16] 2025-11-25 00:17:38,546 | INFO     | corecount: 8
[2025-11-25 01:18:16] 2025-11-25 00:17:38,546 | INFO     | event service: False
[2025-11-25 01:18:16] 2025-11-25 00:17:38,546 | INFO     | sizes: {0: 2297928, 1: 2298613, 2: 2298812, 12: 2298812, 23: 2298840, 34: 2298868, 45: 2299024, 55: 2299052, 66: 2299080, 77: 2299108, 88: 2299164, 99: 2299472, 10
[2025-11-25 01:18:16] 2025-11-25 00:17:38,546 | INFO     | --------------------------------------------------
[2025-11-25 01:18:16] 2025-11-25 00:17:38,546 | INFO     | 
[2025-11-25 01:18:16] 2025-11-25 00:17:38,547 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-11-25 01:18:16] 2025-11-25 00:17:39,019 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,020 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,020 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,020 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,020 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,020 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,020 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,020 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,020 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,020 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,020 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,021 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,021 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,021 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,021 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,021 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,021 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,021 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 01:18:16] 2025-11-25 00:17:39,021 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,021 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 01:18:16] 2025-11-25 00:17:39,021 | INFO     | job 6893862613 has completed (purged errors)
[2025-11-25 01:18:16] 2025-11-25 00:17:39,022 | INFO     | overall cleanup function is called
[2025-11-25 01:18:16] 2025-11-25 00:17:39,618 | INFO     | PID=27141 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 01:18:16] 2025-11-25 00:17:39,619 | INFO     | .. there are 9 such processes running
[2025-11-25 01:18:16] 2025-11-25 00:17:40,047 | INFO     | --- collectZombieJob: --- 10, [1304]
[2025-11-25 01:18:16] 2025-11-25 00:17:40,047 | INFO     | zombie collector waiting for pid 1304
[2025-11-25 01:18:16] 2025-11-25 00:17:40,047 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 01:18:16] 2025-11-25 00:17:40,047 | INFO     | collected zombie processes
[2025-11-25 01:18:16] 2025-11-25 00:17:40,047 | INFO     | will attempt to kill all subprocesses of pid=1304
[2025-11-25 01:18:16] 2025-11-25 00:17:40,200 | INFO     | process IDs to be killed: [1304] (in reverse order)
[2025-11-25 01:18:16] 2025-11-25 00:17:40,936 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 01:18:16] 2025-11-25 00:17:40,937 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 01:18:16] 2025-11-25 00:17:40,941 | INFO     | did not find any defunct processes belonging to 1304
[2025-11-25 01:18:16] 2025-11-25 00:17:40,945 | INFO     | did not find any defunct processes belonging to 1304
[2025-11-25 01:18:16] 2025-11-25 00:17:40,959 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:18:16] 2025-11-25 00:17:40,959 | INFO     | ready for new job
[2025-11-25 01:18:16] 2025-11-25 00:17:40,959 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 01:18:16] 2025-11-25 00:17:40,966 | INFO     | ***************************************
[2025-11-25 01:18:16] 2025-11-25 00:17:40,967 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 01:18:16] 2025-11-25 00:17:40,967 | INFO     | ***************************************
[2025-11-25 01:18:16] 2025-11-25 00:17:40,967 | INFO     | 
[2025-11-25 01:18:16] 2025-11-25 00:17:40,967 | INFO     | pilot is running in a VM
[2025-11-25 01:18:16] 2025-11-25 00:17:40,968 | INFO     | architecture information:
[2025-11-25 01:18:16] 2025-11-25 00:17:40,981 | INFO     | executing command: cat /etc/os-release
[2025-11-25 01:18:16] 2025-11-25 00:17:41,249 | INFO     | cat /etc/os-release:
[2025-11-25 01:18:16] NAME="CentOS Linux"
[2025-11-25 01:18:16] VERSION="7 (Core)"
[2025-11-25 01:18:16] ID="centos"
[2025-11-25 01:18:16] ID_LIKE="rhel fedora"
[2025-11-25 01:18:16] VERSION_ID="7"
[2025-11-25 01:18:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 01:18:16] ANSI_COLOR="0;31"
[2025-11-25 01:18:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 01:18:16] HOME_URL="https://www.centos.org/"
[2025-11-25 01:18:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 01:18:16] 
[2025-11-25 01:18:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 01:18:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 01:18:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 01:18:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 01:18:16] 
[2025-11-25 01:18:16] 2025-11-25 00:17:41,250 | INFO     | ***************************************
[2025-11-25 01:18:16] 2025-11-25 00:17:41,754 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-11-25 01:18:16] 2025-11-25 00:17:42,069 | INFO     | sufficient remaining disk space (494774779904 B)
[2025-11-25 01:18:16] 2025-11-25 00:17:42,070 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 01:18:16] 2025-11-25 00:17:42,070 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:18:16] 2025-11-25 00:17:42,070 | INFO     | update_server=False
[2025-11-25 01:18:16] 2025-11-25 00:17:42,070 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:18:16] 2025-11-25 00:17:42,072 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:18:16] 2025-11-25 00:17:42,072 | INFO     | aborting loop
[2025-11-25 01:18:16] 2025-11-25 00:17:42,094 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:18:16] 2025-11-25 00:17:42,484 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:18:16] 2025-11-25 00:17:42,840 | INFO     | all job control threads have been joined
[2025-11-25 01:18:16] 2025-11-25 00:17:43,077 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:18:16] 2025-11-25 00:17:43,080 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:18:16] 2025-11-25 00:17:43,107 | INFO     | all data control threads have been joined
[2025-11-25 01:18:16] 2025-11-25 00:17:43,188 | INFO     | all payload control threads have been joined
[2025-11-25 01:18:16] 2025-11-25 00:17:43,386 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:18:16] 2025-11-25 00:17:43,423 | INFO     | [job] validate thread has finished
[2025-11-25 01:18:16] 2025-11-25 00:17:43,548 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:18:16] 2025-11-25 00:17:43,563 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:18:16] 2025-11-25 00:17:43,732 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:18:16] 2025-11-25 00:17:43,759 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:18:16] 2025-11-25 00:17:43,846 | INFO     | [job] control thread has finished
[2025-11-25 01:18:16] 2025-11-25 00:17:44,101 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:18:16] 2025-11-25 00:17:44,113 | INFO     | [data] control thread has finished
[2025-11-25 01:18:16] 2025-11-25 00:17:44,117 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:18:16] 2025-11-25 00:17:44,194 | INFO     | [payload] control thread has finished
[2025-11-25 01:18:16] 2025-11-25 00:17:44,505 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:18:16] 2025-11-25 00:17:44,512 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:18:16] 2025-11-25 00:17:44,570 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:18:16] 2025-11-25 00:17:46,493 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:18:16] 2025-11-25 00:17:56,014 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:18:16] 2025-11-25 00:17:57,446 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140159289808704)>', '<ExcThread(monitor, started 140158825371392)>']
[2025-11-25 01:18:16] 2025-11-25 00:18:02,472 | INFO     | all workflow threads have been joined
[2025-11-25 01:18:16] 2025-11-25 00:18:02,472 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:18:16] 2025-11-25 00:18:02,472 | INFO     | traces error code: 0
[2025-11-25 01:18:16] 2025-11-25 00:18:02,473 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:18:16] 2025-11-25 00:18:11,765 | INFO     | PID=27141 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 01:18:16] 2025-11-25 00:18:11,765 | INFO     | .. there are 9 such processes running
[2025-11-25 01:18:16] 2025-11-25 00:18:11,767 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:18:16] 2025-11-25 00:18:11,767 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:18:16] 2025-11-25 00:18:11,767 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:18:16] 2025-11-25 00:18:11,767 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:18:16] 2025-11-25 00:18:11,768 | CRITICAL | thread 'MainThread' is not alive
[2025-11-25 01:18:16] 2025-11-25 00:18:11,768 | INFO     | [monitor] control thread has ended
[2025-11-25 01:18:16] 2025-11-25 00:18:12,227 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:18:16] 2025-11-25 00:18:12,321 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:18:16] 2025-11-25 00:18:12,443 [wrapper] pilotpid: 27141
[2025-11-25 01:18:16] 2025-11-25 00:18:12,545 [wrapper] Pilot exit status: 0
[2025-11-25 01:18:16] 2025-11-25 00:18:12,925 [wrapper] pandaids: 6893862613
[2025-11-25 01:18:16] 2025-11-25 00:18:14,026 [wrapper] cleanup supervisor_pilot 32636 27142
[2025-11-25 01:18:16] 2025-11-25 00:18:14,082 [wrapper] Test setup, not cleaning
[2025-11-25 01:18:16] 2025-11-25 00:18:14,189 [wrapper] apfmon messages muted
[2025-11-25 01:18:16] 2025-11-25 00:18:14,288 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:18:16] 2025-11-25 00:18:14,344 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:18:16]  *** Error codes and diagnostics ***
[2025-11-25 01:18:16]     "exeErrorCode": 0,
[2025-11-25 01:18:16]     "exeErrorDiag": "",
[2025-11-25 01:18:16]     "pilotErrorCode": 0,
[2025-11-25 01:18:16]     "pilotErrorDiag": "",
[2025-11-25 01:18:16]  *** Listing of results directory ***
[2025-11-25 01:18:16] total 1326820
[2025-11-25 01:18:16] -rw-r--r--. 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-25 01:18:16] -rw-r--r--. 1 boinc boinc      5112 Nov 20 15:17 queuedata.json
[2025-11-25 01:18:16] -rwx------. 1 boinc boinc     36292 Nov 20 15:18 runpilot2-wrapper.sh
[2025-11-25 01:18:16] -rw-r--r--. 1 boinc boinc       100 Nov 24 03:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:18:16] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 03:41 run_atlas
[2025-11-25 01:18:16] -rw-r--r--. 1 boinc boinc       105 Nov 24 03:41 job.xml
[2025-11-25 01:18:16] -rw-r--r--. 2 boinc boinc 409214907 Nov 24 03:41 EVNT.47493127._000595.pool.root.1
[2025-11-25 01:18:16] -rw-r--r--. 1 boinc boinc      6391 Nov 24 03:41 init_data.xml
[2025-11-25 01:18:16] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:41 start_atlas.sh
[2025-11-25 01:18:16] drwxrwx--x. 2 boinc boinc        68 Nov 24 03:41 shared
[2025-11-25 01:18:16] -rw-r--r--. 2 boinc boinc    590098 Nov 24 03:41 input.tar.gz
[2025-11-25 01:18:16] -rw-r--r--. 1 boinc boinc         0 Nov 24 03:41 boinc_lockfile
[2025-11-25 01:18:16] -rw-r--r--. 1 boinc boinc      2785 Nov 24 03:41 pandaJob.out
[2025-11-25 01:18:16] -rw-------. 1 boinc boinc    989786 Nov 24 03:45 agis_schedconf.cvmfs.json
[2025-11-25 01:18:16] drwx------. 5 boinc boinc      4096 Nov 24 03:45 pilot3
[2025-11-25 01:18:16] -rw-r--r--. 1 boinc boinc       533 Nov 25 00:48 boinc_task_state.xml
[2025-11-25 01:18:16] -rw-------. 1 boinc boinc 920192171 Nov 25 01:14 HITS.47523449._005942.pool.root.1
[2025-11-25 01:18:16] -rw-------. 1 boinc boinc      1030 Nov 25 01:15 memory_monitor_summary.json
[2025-11-25 01:18:16] -rw-------. 1 boinc boinc   1516227 Nov 25 01:15 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:18:16] -rw-------. 1 boinc boinc   2390052 Nov 25 01:16 log.47523449._005942.job.log.tgz.1
[2025-11-25 01:18:16] -rw-------. 1 boinc boinc      8627 Nov 25 01:17 heartbeat.json
[2025-11-25 01:18:16] -rw-r--r--. 1 boinc boinc      8192 Nov 25 01:18 boinc_mmap_file
[2025-11-25 01:18:16] -rw-r--r--. 1 boinc boinc        29 Nov 25 01:18 wrapper_checkpoint.txt
[2025-11-25 01:18:16] -rw-------. 1 boinc boinc        95 Nov 25 01:18 pilot_heartbeat.json
[2025-11-25 01:18:16] -rw-------. 1 boinc boinc       890 Nov 25 01:18 pilotlog.txt
[2025-11-25 01:18:16] -rw-------. 1 boinc boinc  10290657 Nov 25 01:18 log.47523449._005942.job.log.1
[2025-11-25 01:18:16] -rw-------. 1 boinc boinc       353 Nov 25 01:18 output.list
[2025-11-25 01:18:16] -rw-r--r--. 1 boinc boinc       620 Nov 25 01:18 runtime_log
[2025-11-25 01:18:16] -rw-------. 1 boinc boinc  12697600 Nov 25 01:18 result.tar.gz
[2025-11-25 01:18:16] -rw-r--r--. 1 boinc boinc      8817 Nov 25 01:18 runtime_log.err
[2025-11-25 01:18:16] -rw-------. 1 boinc boinc       662 Nov 25 01:18 jKCNDmXfKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmr3HKDmhV9LSm.diag
[2025-11-25 01:18:16] -rw-r--r--. 1 boinc boinc     21469 Nov 25 01:18 stderr.txt
[2025-11-25 01:18:17] HITS file was successfully produced:
[2025-11-25 01:18:17] -rw-------. 1 boinc boinc 920192171 Nov 25 01:14 shared/HITS.pool.root.1
[2025-11-25 01:18:17]  *** Contents of shared directory: ***
[2025-11-25 01:18:17] total 1311248
[2025-11-25 01:18:17] -rw-r--r--. 2 boinc boinc 409214907 Nov 24 03:41 ATLAS.root_0
[2025-11-25 01:18:17] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:41 start_atlas.sh
[2025-11-25 01:18:17] -rw-r--r--. 2 boinc boinc    590098 Nov 24 03:41 input.tar.gz
[2025-11-25 01:18:17] -rw-------. 1 boinc boinc 920192171 Nov 25 01:14 HITS.pool.root.1
[2025-11-25 01:18:17] -rw-------. 1 boinc boinc  12697600 Nov 25 01:18 result.tar.gz
01:18:18 (23343): run_atlas exited; CPU time 340050.920307
01:18:18 (23343): called boinc_finish(0)

</stderr_txt>
]]>

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