Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:25:37 (17755): wrapper (7.7.26015): starting
03:25:37 (17755): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:25:37] Arguments: --nthreads 8
[2025-11-24 03:25:37] Threads: 8
[2025-11-24 03:25:37] Checking for CVMFS
[2025-11-24 03:25:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:25:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:25:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:25:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:25:39] 2.11.2.0 20636 281907 141768 153229 3 84 24667297 25165824 4632 130560 2 123626277 99.888 70298021 2920 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 03:25:39] CVMFS is ok
[2025-11-24 03:25:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:25:39] Checking for apptainer binary...
[2025-11-24 03:25:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:25:39] Running /usr/bin/apptainer --version
[2025-11-24 03:25:39] apptainer version 1.3.2-1.el7
[2025-11-24 03:25:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:25:47] cg-vwn312.simple-grid.lan
[2025-11-24 03:25:47] apptainer works
[2025-11-24 03:25:48] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:25:48] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:25:48] Starting ATLAS job with PandaID=6893878710
[2025-11-24 03:25:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 03:07:06]  *** The last 200 lines of the pilot log: ***
[2025-11-25 03:07:06] 2025-11-25 02:06:07,203 | INFO     | log transfer has been attempted: DONE
[2025-11-25 03:07:06] 2025-11-25 02:06:07,204 | INFO     | job 6893878710 has finished - writing final server update
[2025-11-25 03:07:06] 2025-11-25 02:06:07,204 | INFO     | total number of processed events: 1000 (read)
[2025-11-25 03:07:06] 2025-11-25 02:06:07,205 | INFO     | executing command: lscpu
[2025-11-25 03:07:06] 2025-11-25 02:06:07,232 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 03:07:06] 2025-11-25 02:06:07,868 | INFO     | time since job start (84995s) is within the limit (172800.0s)
[2025-11-25 03:07:06] 2025-11-25 02:06:08,172 | INFO     | monitor loop #5657: job 0:6893878710 is in state 'finished'
[2025-11-25 03:07:06] 2025-11-25 02:06:08,172 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:07:06] 2025-11-25 02:06:09,875 | INFO     | time since job start (84997s) is within the limit (172800.0s)
[2025-11-25 03:07:06] 2025-11-25 02:06:10,675 | INFO     | monitor loop #5658: job 0:6893878710 is in state 'finished'
[2025-11-25 03:07:06] 2025-11-25 02:06:10,676 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:07:06] 2025-11-25 02:06:11,881 | INFO     | time since job start (84999s) is within the limit (172800.0s)
[2025-11-25 03:07:06] 2025-11-25 02:06:13,179 | INFO     | monitor loop #5659: job 0:6893878710 is in state 'finished'
[2025-11-25 03:07:06] 2025-11-25 02:06:13,179 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:07:06] 2025-11-25 02:06:13,886 | INFO     | time since job start (85001s) is within the limit (172800.0s)
[2025-11-25 03:07:06] 2025-11-25 02:06:14,515 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 03:07:06] 2025-11-25 02:06:14,516 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 03:07:06] 2025-11-25 02:06:14,518 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6893878710/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 03:07:06] 2025-11-25 02:06:14,519 | INFO     | extracted standard info from prmon json
[2025-11-25 03:07:06] 2025-11-25 02:06:14,519 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 03:07:06] 2025-11-25 02:06:14,519 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 03:07:06] 2025-11-25 02:06:14,547 | INFO     | fitting pss+swap vs Time
[2025-11-25 03:07:06] 2025-11-25 02:06:14,549 | INFO     | sum of square deviations: 825597241648.0847
[2025-11-25 03:07:06] 2025-11-25 02:06:14,601 | INFO     | sum of deviations: 3043528828078.224
[2025-11-25 03:07:06] 2025-11-25 02:06:14,602 | INFO     | mean x: 1763994102.577922
[2025-11-25 03:07:06] 2025-11-25 02:06:14,602 | INFO     | mean y: 2833824.9285714286
[2025-11-25 03:07:06] 2025-11-25 02:06:14,602 | INFO     | intersect: -6500054790.637259
[2025-11-25 03:07:06] 2025-11-25 02:06:14,604 | INFO     | chi2: 25.875054919860407
[2025-11-25 03:07:06] 2025-11-25 02:06:14,606 | INFO     | sum of square deviations: 816694860619.7538
[2025-11-25 03:07:06] 2025-11-25 02:06:14,656 | INFO     | sum of deviations: 3515221698769.225
[2025-11-25 03:07:06] 2025-11-25 02:06:14,657 | INFO     | mean x: 1763993950.0818248
[2025-11-25 03:07:06] 2025-11-25 02:06:14,657 | INFO     | mean y: 2841904.9449674147
[2025-11-25 03:07:06] 2025-11-25 02:06:14,657 | INFO     | intersect: -7589748802.825291
[2025-11-25 03:07:06] 2025-11-25 02:06:14,659 | INFO     | chi2: 22.428635719805076
[2025-11-25 03:07:06] 2025-11-25 02:06:14,659 | INFO     | current chi2=22.428635719805076 (change=13.3194662223114 %)
[2025-11-25 03:07:06] 2025-11-25 02:06:14,659 | INFO     | right removable region: 1380
[2025-11-25 03:07:06] 2025-11-25 02:06:14,661 | INFO     | sum of square deviations: 816693949279.7539
[2025-11-25 03:07:06] 2025-11-25 02:06:14,712 | INFO     | sum of deviations: 2457629176570.2837
[2025-11-25 03:07:06] 2025-11-25 02:06:14,712 | INFO     | mean x: 1763994255.0818248
[2025-11-25 03:07:06] 2025-11-25 02:06:14,713 | INFO     | mean y: 2843860.2983345403
[2025-11-25 03:07:06] 2025-11-25 02:06:14,713 | INFO     | intersect: -5305440537.320538
[2025-11-25 03:07:06] 2025-11-25 02:06:14,714 | INFO     | chi2: 21.07698217035868
[2025-11-25 03:07:06] 2025-11-25 02:06:14,715 | INFO     | current chi2=21.07698217035868 (change=18.543236968432346 %)
[2025-11-25 03:07:06] 2025-11-25 02:06:14,715 | INFO     | left removable region: 10
[2025-11-25 03:07:06] 2025-11-25 02:06:14,717 | INFO     | sum of square deviations: 797333575073.2761
[2025-11-25 03:07:06] 2025-11-25 02:06:14,769 | INFO     | sum of deviations: 2553222867097.6226
[2025-11-25 03:07:06] 2025-11-25 02:06:14,769 | INFO     | mean x: 1763994224.5905108
[2025-11-25 03:07:06] 2025-11-25 02:06:14,770 | INFO     | mean y: 2862507.6481751823
[2025-11-25 03:07:06] 2025-11-25 02:06:14,770 | INFO     | intersect: -5645802658.921186
[2025-11-25 03:07:06] 2025-11-25 02:06:14,772 | INFO     | chi2: 13.358708089198835
[2025-11-25 03:07:06] 2025-11-25 02:06:14,772 | INFO     | current memory leak: 3.20 B/s (using 1370 data points, chi2=13.36)
[2025-11-25 03:07:06] 2025-11-25 02:06:14,775 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-25 03:07:06] 2025-11-25 02:06:14,775 | INFO     | ..............................
[2025-11-25 03:07:06] 2025-11-25 02:06:14,775 | INFO     | . Timing measurements:
[2025-11-25 03:07:06] 2025-11-25 02:06:14,775 | INFO     | . get job = 0 s
[2025-11-25 03:07:06] 2025-11-25 02:06:14,775 | INFO     | . initial setup = 6 s
[2025-11-25 03:07:06] 2025-11-25 02:06:14,775 | INFO     | . payload setup = 129 s
[2025-11-25 03:07:06] 2025-11-25 02:06:14,775 | INFO     | . stage-in = 0 s
[2025-11-25 03:07:06] 2025-11-25 02:06:14,776 | INFO     | . payload execution = 84657 s
[2025-11-25 03:07:06] 2025-11-25 02:06:14,776 | INFO     | . stage-out = 3 s
[2025-11-25 03:07:06] 2025-11-25 02:06:14,776 | INFO     | . log creation = 0 s
[2025-11-25 03:07:06] 2025-11-25 02:06:14,776 | INFO     | ..............................
[2025-11-25 03:07:06] 2025-11-25 02:06:14,897 | INFO     | 
[2025-11-25 03:07:06] 2025-11-25 02:06:14,897 | INFO     | job summary report
[2025-11-25 03:07:06] 2025-11-25 02:06:14,897 | INFO     | --------------------------------------------------
[2025-11-25 03:07:06] 2025-11-25 02:06:14,897 | INFO     | PanDA job id: 6893878710
[2025-11-25 03:07:06] 2025-11-25 02:06:14,898 | INFO     | task id: 47523449
[2025-11-25 03:07:06] 2025-11-25 02:06:14,898 | INFO     | errors: (none)
[2025-11-25 03:07:06] 2025-11-25 02:06:14,898 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 03:07:06] 2025-11-25 02:06:14,898 | INFO     | pilot state: finished 
[2025-11-25 03:07:06] 2025-11-25 02:06:14,898 | INFO     | transexitcode: 0
[2025-11-25 03:07:06] 2025-11-25 02:06:14,898 | INFO     | exeerrorcode: 0
[2025-11-25 03:07:06] 2025-11-25 02:06:14,898 | INFO     | exeerrordiag: 
[2025-11-25 03:07:06] 2025-11-25 02:06:14,898 | INFO     | exitcode: 0
[2025-11-25 03:07:06] 2025-11-25 02:06:14,898 | INFO     | exitmsg: OK
[2025-11-25 03:07:06] 2025-11-25 02:06:14,898 | INFO     | cpuconsumptiontime: 339314 s
[2025-11-25 03:07:06] 2025-11-25 02:06:14,898 | INFO     | nevents: 1000
[2025-11-25 03:07:06] 2025-11-25 02:06:14,899 | INFO     | neventsw: 0
[2025-11-25 03:07:06] 2025-11-25 02:06:14,899 | INFO     | pid: 28111
[2025-11-25 03:07:06] 2025-11-25 02:06:14,899 | INFO     | pgrp: 28111
[2025-11-25 03:07:06] 2025-11-25 02:06:14,899 | INFO     | corecount: 8
[2025-11-25 03:07:06] 2025-11-25 02:06:14,899 | INFO     | event service: False
[2025-11-25 03:07:06] 2025-11-25 02:06:14,899 | INFO     | sizes: {0: 2298579, 1: 2298778, 12: 2298778, 23: 2298806, 33: 2298834, 44: 2298890, 55: 2299046, 66: 2299074, 76: 2299102, 87: 2299158, 98: 2299756, 84790: 2360198
[2025-11-25 03:07:06] 2025-11-25 02:06:14,899 | INFO     | --------------------------------------------------
[2025-11-25 03:07:06] 2025-11-25 02:06:14,899 | INFO     | 
[2025-11-25 03:07:06] 2025-11-25 02:06:14,899 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-25 03:07:06] 2025-11-25 02:06:14,970 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,971 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,971 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,971 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,971 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,971 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,971 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,971 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,972 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,972 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,972 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,972 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,972 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,972 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,972 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,972 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,972 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,972 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 03:07:06] 2025-11-25 02:06:14,972 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,973 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 03:07:06] 2025-11-25 02:06:14,973 | INFO     | job 6893878710 has completed (purged errors)
[2025-11-25 03:07:06] 2025-11-25 02:06:14,973 | INFO     | overall cleanup function is called
[2025-11-25 03:07:06] 2025-11-25 02:06:15,990 | INFO     | --- collectZombieJob: --- 10, [28111]
[2025-11-25 03:07:06] 2025-11-25 02:06:15,990 | INFO     | zombie collector waiting for pid 28111
[2025-11-25 03:07:06] 2025-11-25 02:06:15,990 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 03:07:06] 2025-11-25 02:06:15,990 | INFO     | collected zombie processes
[2025-11-25 03:07:06] 2025-11-25 02:06:15,990 | INFO     | will attempt to kill all subprocesses of pid=28111
[2025-11-25 03:07:06] 2025-11-25 02:06:16,062 | INFO     | process IDs to be killed: [28111] (in reverse order)
[2025-11-25 03:07:06] 2025-11-25 02:06:16,148 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 03:07:06] 2025-11-25 02:06:16,148 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 03:07:06] 2025-11-25 02:06:16,151 | INFO     | did not find any defunct processes belonging to 28111
[2025-11-25 03:07:06] 2025-11-25 02:06:16,153 | INFO     | did not find any defunct processes belonging to 28111
[2025-11-25 03:07:06] 2025-11-25 02:06:16,155 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 03:07:06] 2025-11-25 02:06:16,156 | INFO     | ready for new job
[2025-11-25 03:07:06] 2025-11-25 02:06:16,156 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 03:07:06] 2025-11-25 02:06:16,167 | INFO     | ***************************************
[2025-11-25 03:07:06] 2025-11-25 02:06:16,167 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 03:07:06] 2025-11-25 02:06:16,167 | INFO     | ***************************************
[2025-11-25 03:07:06] 2025-11-25 02:06:16,168 | INFO     | 
[2025-11-25 03:07:06] 2025-11-25 02:06:16,168 | INFO     | pilot is running in a VM
[2025-11-25 03:07:06] 2025-11-25 02:06:16,168 | INFO     | architecture information:
[2025-11-25 03:07:06] 2025-11-25 02:06:16,171 | INFO     | executing command: cat /etc/os-release
[2025-11-25 03:07:06] 2025-11-25 02:06:16,206 | INFO     | cat /etc/os-release:
[2025-11-25 03:07:06] NAME="CentOS Linux"
[2025-11-25 03:07:06] VERSION="7 (Core)"
[2025-11-25 03:07:06] ID="centos"
[2025-11-25 03:07:06] ID_LIKE="rhel fedora"
[2025-11-25 03:07:06] VERSION_ID="7"
[2025-11-25 03:07:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 03:07:06] ANSI_COLOR="0;31"
[2025-11-25 03:07:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 03:07:06] HOME_URL="https://www.centos.org/"
[2025-11-25 03:07:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 03:07:06] 
[2025-11-25 03:07:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 03:07:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 03:07:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 03:07:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 03:07:06] 
[2025-11-25 03:07:06] 2025-11-25 02:06:16,206 | INFO     | ***************************************
[2025-11-25 03:07:06] 2025-11-25 02:06:16,709 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-25 03:07:06] 2025-11-25 02:06:16,744 | INFO     | sufficient remaining disk space (492656656384 B)
[2025-11-25 03:07:06] 2025-11-25 02:06:16,744 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 03:07:06] 2025-11-25 02:06:16,744 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 03:07:06] 2025-11-25 02:06:16,744 | INFO     | update_server=False
[2025-11-25 03:07:06] 2025-11-25 02:06:16,745 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 03:07:06] 2025-11-25 02:06:16,745 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:07:06] 2025-11-25 02:06:16,745 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:07:06] 2025-11-25 02:06:16,746 | INFO     | aborting loop
[2025-11-25 03:07:06] 2025-11-25 02:06:16,758 | INFO     | all job control threads have been joined
[2025-11-25 03:07:06] 2025-11-25 02:06:17,039 | INFO     | all data control threads have been joined
[2025-11-25 03:07:06] 2025-11-25 02:06:17,278 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 03:07:06] 2025-11-25 02:06:17,648 | INFO     | all payload control threads have been joined
[2025-11-25 03:07:06] 2025-11-25 02:06:17,710 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 03:07:06] 2025-11-25 02:06:17,750 | INFO     | [job] retrieve thread has finished
[2025-11-25 03:07:06] 2025-11-25 02:06:17,752 | INFO     | [job] queue monitor thread has finished
[2025-11-25 03:07:06] 2025-11-25 02:06:17,751 | INFO     | [job] job monitor thread has finished
[2025-11-25 03:07:06] 2025-11-25 02:06:17,761 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 03:07:06] 2025-11-25 02:06:17,764 | INFO     | [job] control thread has finished
[2025-11-25 03:07:06] 2025-11-25 02:06:17,998 | INFO     | [job] validate thread has finished
[2025-11-25 03:07:06] 2025-11-25 02:06:18,045 | INFO     | [data] control thread has finished
[2025-11-25 03:07:06] 2025-11-25 02:06:18,183 | INFO     | [data] copytool_in thread has finished
[2025-11-25 03:07:06] 2025-11-25 02:06:18,282 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 03:07:06] 2025-11-25 02:06:18,331 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 03:07:06] 2025-11-25 02:06:18,653 | INFO     | [payload] control thread has finished
[2025-11-25 03:07:06] 2025-11-25 02:06:18,808 | INFO     | [payload] validate_post thread has finished
[2025-11-25 03:07:06] 2025-11-25 02:06:19,244 | INFO     | [payload] failed_post thread has finished
[2025-11-25 03:07:06] 2025-11-25 02:06:19,284 | INFO     | [data] copytool_out thread has finished
[2025-11-25 03:07:06] 2025-11-25 02:06:21,716 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 03:07:06] 2025-11-25 02:06:26,854 | INFO     | job.realtimelogging is not enabled
[2025-11-25 03:07:06] 2025-11-25 02:06:27,860 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 03:07:06] 2025-11-25 02:06:46,997 | INFO     | PID=21576 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 03:07:06] 2025-11-25 02:06:46,997 | INFO     | .. there are 2 such processes running
[2025-11-25 03:07:06] 2025-11-25 02:06:46,998 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 03:07:06] 2025-11-25 02:06:46,998 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 03:07:06] 2025-11-25 02:06:46,998 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 03:07:06] 2025-11-25 02:06:59,523 | INFO     | [monitor] cgroup control has ended
[2025-11-25 03:07:06] 2025-11-25 02:07:01,273 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139877553764160)>', '<ExcThread(monitor, started 139877253363456)>']
[2025-11-25 03:07:06] 2025-11-25 02:07:02,060 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 03:07:06] 2025-11-25 02:07:02,060 | INFO     | [monitor] control thread has ended
[2025-11-25 03:07:06] 2025-11-25 02:07:06,291 | INFO     | all workflow threads have been joined
[2025-11-25 03:07:06] 2025-11-25 02:07:06,291 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 03:07:06] 2025-11-25 02:07:06,292 | INFO     | traces error code: 0
[2025-11-25 03:07:06] 2025-11-25 02:07:06,292 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 03:07:06] 2025-11-25 02:07:06,510 [wrapper] ==== pilot stdout END ====
[2025-11-25 03:07:06] 2025-11-25 02:07:06,518 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 03:07:06] 2025-11-25 02:07:06,526 [wrapper] pilotpid: 21576
[2025-11-25 03:07:06] 2025-11-25 02:07:06,534 [wrapper] Pilot exit status: 0
[2025-11-25 03:07:06] 2025-11-25 02:07:06,565 [wrapper] pandaids: 6893878710
[2025-11-25 03:07:06] 2025-11-25 02:07:06,640 [wrapper] cleanup supervisor_pilot 17275 21577
[2025-11-25 03:07:06] 2025-11-25 02:07:06,649 [wrapper] Test setup, not cleaning
[2025-11-25 03:07:06] 2025-11-25 02:07:06,655 [wrapper] apfmon messages muted
[2025-11-25 03:07:06] 2025-11-25 02:07:06,666 [wrapper] ==== wrapper stdout END ====
[2025-11-25 03:07:06] 2025-11-25 02:07:06,670 [wrapper] ==== wrapper stderr END ====
[2025-11-25 03:07:06]  *** Error codes and diagnostics ***
[2025-11-25 03:07:06]     "exeErrorCode": 0,
[2025-11-25 03:07:06]     "exeErrorDiag": "",
[2025-11-25 03:07:06]     "pilotErrorCode": 0,
[2025-11-25 03:07:06]     "pilotErrorDiag": "",
[2025-11-25 03:07:06]  *** Listing of results directory ***
[2025-11-25 03:07:06] total 1329448
[2025-11-25 03:07:06] -rw-r--r--. 1 boinc boinc    576529 Nov 20 19:04 pilot3.tar.gz
[2025-11-25 03:07:06] -rw-r--r--. 1 boinc boinc      5112 Nov 20 19:54 queuedata.json
[2025-11-25 03:07:06] -rwx------. 1 boinc boinc     36292 Nov 20 19:55 runpilot2-wrapper.sh
[2025-11-25 03:07:06] -rw-r--r--. 1 boinc boinc       100 Nov 24 03:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 03:07:06] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 03:25 run_atlas
[2025-11-25 03:07:06] -rw-r--r--. 1 boinc boinc       105 Nov 24 03:25 job.xml
[2025-11-25 03:07:06] -rw-r--r--. 1 boinc boinc      6390 Nov 24 03:25 init_data.xml
[2025-11-25 03:07:06] -rw-r--r--. 2 boinc boinc 410124524 Nov 24 03:25 EVNT.47493127._000813.pool.root.1
[2025-11-25 03:07:06] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:25 start_atlas.sh
[2025-11-25 03:07:06] drwxrwx--x. 2 boinc boinc        68 Nov 24 03:25 shared
[2025-11-25 03:07:06] -rw-r--r--. 2 boinc boinc    590103 Nov 24 03:25 input.tar.gz
[2025-11-25 03:07:06] -rw-r--r--. 1 boinc boinc         0 Nov 24 03:25 boinc_lockfile
[2025-11-25 03:07:06] -rw-r--r--. 1 boinc boinc      2782 Nov 24 03:25 pandaJob.out
[2025-11-25 03:07:06] -rw-------. 1 boinc boinc    989786 Nov 24 03:29 agis_schedconf.cvmfs.json
[2025-11-25 03:07:06] drwx------. 5 boinc boinc      4096 Nov 24 03:29 pilot3
[2025-11-25 03:07:06] -rw-r--r--. 1 boinc boinc       533 Nov 25 02:42 boinc_task_state.xml
[2025-11-25 03:07:06] -rw-------. 1 boinc boinc 919783748 Nov 25 03:05 HITS.47523449._008121.pool.root.1
[2025-11-25 03:07:06] -rw-------. 1 boinc boinc      1032 Nov 25 03:06 memory_monitor_summary.json
[2025-11-25 03:07:06] -rw-------. 1 boinc boinc   1516227 Nov 25 03:06 agis_ddmendpoints.agis.ALL.json
[2025-11-25 03:07:06] -rw-------. 1 boinc boinc   2469179 Nov 25 03:06 log.47523449._008121.job.log.tgz.1
[2025-11-25 03:07:06] -rw-------. 1 boinc boinc      8628 Nov 25 03:06 heartbeat.json
[2025-11-25 03:07:06] -rw-------. 1 boinc boinc        95 Nov 25 03:06 pilot_heartbeat.json
[2025-11-25 03:07:06] -rw-r--r--. 1 boinc boinc      8192 Nov 25 03:06 boinc_mmap_file
[2025-11-25 03:07:06] -rw-r--r--. 1 boinc boinc        29 Nov 25 03:06 wrapper_checkpoint.txt
[2025-11-25 03:07:06] -rw-------. 1 boinc boinc      4956 Nov 25 03:07 pilotlog.txt
[2025-11-25 03:07:06] -rw-------. 1 boinc boinc  11300535 Nov 25 03:07 log.47523449._008121.job.log.1
[2025-11-25 03:07:06] -rw-------. 1 boinc boinc       353 Nov 25 03:07 output.list
[2025-11-25 03:07:06] -rw-r--r--. 1 boinc boinc       620 Nov 25 03:07 runtime_log
[2025-11-25 03:07:06] -rw-------. 1 boinc boinc  13793280 Nov 25 03:07 result.tar.gz
[2025-11-25 03:07:06] -rw-r--r--. 1 boinc boinc      8817 Nov 25 03:07 runtime_log.err
[2025-11-25 03:07:06] -rw-------. 1 boinc boinc       662 Nov 25 03:07 gafMDmOzOg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtyGKDmWRlxSn.diag
[2025-11-25 03:07:06] -rw-r--r--. 1 boinc boinc     21404 Nov 25 03:07 stderr.txt
[2025-11-25 03:07:06] HITS file was successfully produced:
[2025-11-25 03:07:06] -rw-------. 1 boinc boinc 919783748 Nov 25 03:05 shared/HITS.pool.root.1
[2025-11-25 03:07:06]  *** Contents of shared directory: ***
[2025-11-25 03:07:06] total 1312812
[2025-11-25 03:07:06] -rw-r--r--. 2 boinc boinc 410124524 Nov 24 03:25 ATLAS.root_0
[2025-11-25 03:07:06] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:25 start_atlas.sh
[2025-11-25 03:07:06] -rw-r--r--. 2 boinc boinc    590103 Nov 24 03:25 input.tar.gz
[2025-11-25 03:07:06] -rw-------. 1 boinc boinc 919783748 Nov 25 03:05 HITS.pool.root.1
[2025-11-25 03:07:06] -rw-------. 1 boinc boinc  13793280 Nov 25 03:07 result.tar.gz
03:07:08 (17755): run_atlas exited; CPU time 339657.500936
03:07:08 (17755): called boinc_finish(0)

</stderr_txt>
]]>

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