Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:00:20 (24634): wrapper (7.7.26015): starting
03:00:20 (24634): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:00:20] Arguments: --nthreads 8
[2025-11-24 03:00:20] Threads: 8
[2025-11-24 03:00:20] Checking for CVMFS
[2025-11-24 03:00:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:00:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:00:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:00:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:00:23] 2.11.2.0 9405 207849 143024 153228 0 230 20159562 25165825 4366 130560 2 89780576 99.886 41292374 2513 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 03:00:23] CVMFS is ok
[2025-11-24 03:00:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:00:23] Checking for apptainer binary...
[2025-11-24 03:00:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:00:23] Running /usr/bin/apptainer --version
[2025-11-24 03:00:23] apptainer version 1.3.2-1.el7
[2025-11-24 03:00:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:00:27] cg-vwn431.simple-grid.lan
[2025-11-24 03:00:27] apptainer works
[2025-11-24 03:00:28] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:00:28] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:00:28] Starting ATLAS job with PandaID=6893879774
[2025-11-24 03:00:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 02:01:52]  *** The last 200 lines of the pilot log: ***
[2025-11-25 02:01:52] 2025-11-25 01:01:08,001 | INFO     | monitor loop #5520: job 0:6893879774 is in state 'finished'
[2025-11-25 02:01:52] 2025-11-25 01:01:08,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:01:52] 2025-11-25 01:01:08,768 | INFO     | time since job start (82667s) is within the limit (172800.0s)
[2025-11-25 02:01:52] 2025-11-25 01:01:10,505 | INFO     | monitor loop #5521: job 0:6893879774 is in state 'finished'
[2025-11-25 02:01:52] 2025-11-25 01:01:10,505 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:01:52] 2025-11-25 01:01:10,774 | INFO     | time since job start (82669s) is within the limit (172800.0s)
[2025-11-25 02:01:52] 2025-11-25 01:01:12,779 | INFO     | time since job start (82671s) is within the limit (172800.0s)
[2025-11-25 02:01:52] 2025-11-25 01:01:13,009 | INFO     | monitor loop #5522: job 0:6893879774 is in state 'finished'
[2025-11-25 02:01:52] 2025-11-25 01:01:13,009 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:01:52] 2025-11-25 01:01:13,545 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 02:01:52] 2025-11-25 01:01:13,548 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 02:01:52] 2025-11-25 01:01:13,551 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6893879774/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 02:01:52] 2025-11-25 01:01:13,552 | INFO     | extracted standard info from prmon json
[2025-11-25 02:01:52] 2025-11-25 01:01:13,552 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 02:01:52] 2025-11-25 01:01:13,552 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 02:01:52] 2025-11-25 01:01:13,580 | INFO     | fitting pss+swap vs Time
[2025-11-25 02:01:52] 2025-11-25 01:01:13,582 | INFO     | sum of square deviations: 757848013708.4774
[2025-11-25 02:01:52] 2025-11-25 01:01:13,633 | INFO     | sum of deviations: 4100567265165.953
[2025-11-25 02:01:52] 2025-11-25 01:01:13,634 | INFO     | mean x: 1763991388.2011878
[2025-11-25 02:01:52] 2025-11-25 01:01:13,634 | INFO     | mean y: 2854534.2843355606
[2025-11-25 02:01:52] 2025-11-25 01:01:13,634 | INFO     | intersect: -9541757593.27995
[2025-11-25 02:01:52] 2025-11-25 01:01:13,636 | INFO     | chi2: 17.38393280405711
[2025-11-25 02:01:52] 2025-11-25 01:01:13,638 | INFO     | sum of square deviations: 749440526288.7373
[2025-11-25 02:01:52] 2025-11-25 01:01:13,687 | INFO     | sum of deviations: 4552790858940.728
[2025-11-25 02:01:52] 2025-11-25 01:01:13,687 | INFO     | mean x: 1763991235.7056632
[2025-11-25 02:01:52] 2025-11-25 01:01:13,688 | INFO     | mean y: 2862736.247391952
[2025-11-25 02:01:52] 2025-11-25 01:01:13,688 | INFO     | intersect: -10713241999.831642
[2025-11-25 02:01:52] 2025-11-25 01:01:13,689 | INFO     | chi2: 14.238126656090788
[2025-11-25 02:01:52] 2025-11-25 01:01:13,689 | INFO     | current chi2=14.238126656090788 (change=18.09605561310123 %)
[2025-11-25 02:01:52] 2025-11-25 01:01:13,690 | INFO     | right removable region: 1341
[2025-11-25 02:01:52] 2025-11-25 01:01:13,692 | INFO     | sum of square deviations: 749439539308.7375
[2025-11-25 02:01:52] 2025-11-25 01:01:13,741 | INFO     | sum of deviations: 3546038883697.2373
[2025-11-25 02:01:52] 2025-11-25 01:01:13,741 | INFO     | mean x: 1763991540.7056632
[2025-11-25 02:01:52] 2025-11-25 01:01:13,742 | INFO     | mean y: 2864590.798062593
[2025-11-25 02:01:52] 2025-11-25 01:01:13,742 | INFO     | intersect: -8343616033.409313
[2025-11-25 02:01:52] 2025-11-25 01:01:13,744 | INFO     | chi2: 12.80140193689453
[2025-11-25 02:01:52] 2025-11-25 01:01:13,744 | INFO     | current chi2=12.80140193689453 (change=26.360725842733906 %)
[2025-11-25 02:01:52] 2025-11-25 01:01:13,746 | INFO     | sum of square deviations: 741093484683.9424
[2025-11-25 02:01:52] 2025-11-25 01:01:13,797 | INFO     | sum of deviations: 3076549923855.465
[2025-11-25 02:01:52] 2025-11-25 01:01:13,798 | INFO     | mean x: 1763991693.210172
[2025-11-25 02:01:52] 2025-11-25 01:01:13,798 | INFO     | mean y: 2873167.7741211667
[2025-11-25 02:01:52] 2025-11-25 01:01:13,798 | INFO     | intersect: -7320101087.95275
[2025-11-25 02:01:52] 2025-11-25 01:01:13,799 | INFO     | chi2: 9.620515602536102
[2025-11-25 02:01:52] 2025-11-25 01:01:13,800 | INFO     | current chi2=9.620515602536102 (change=24.847952982328387 %)
[2025-11-25 02:01:52] 2025-11-25 01:01:13,800 | INFO     | left removable region: 20
[2025-11-25 02:01:52] 2025-11-25 01:01:13,801 | INFO     | sum of square deviations: 714804207913.122
[2025-11-25 02:01:52] 2025-11-25 01:01:13,850 | INFO     | sum of deviations: 2976810507231.678
[2025-11-25 02:01:52] 2025-11-25 01:01:13,850 | INFO     | mean x: 1763991815.2233157
[2025-11-25 02:01:52] 2025-11-25 01:01:13,850 | INFO     | mean y: 2895709.5299015897
[2025-11-25 02:01:52] 2025-11-25 01:01:13,850 | INFO     | intersect: -7343268893.442984
[2025-11-25 02:01:52] 2025-11-25 01:01:13,852 | INFO     | chi2: 1.8768672425171329
[2025-11-25 02:01:52] 2025-11-25 01:01:13,853 | INFO     | current memory leak: 4.16 B/s (using 1321 data points, chi2=1.88)
[2025-11-25 02:01:52] 2025-11-25 01:01:13,855 | INFO     | could have reported an average CPU frequency of 1999 MHz (45 samples)
[2025-11-25 02:01:52] 2025-11-25 01:01:13,855 | INFO     | ..............................
[2025-11-25 02:01:52] 2025-11-25 01:01:13,855 | INFO     | . Timing measurements:
[2025-11-25 02:01:52] 2025-11-25 01:01:13,855 | INFO     | . get job = 0 s
[2025-11-25 02:01:52] 2025-11-25 01:01:13,856 | INFO     | . initial setup = 5 s
[2025-11-25 02:01:52] 2025-11-25 01:01:13,856 | INFO     | . payload setup = 162 s
[2025-11-25 02:01:52] 2025-11-25 01:01:13,856 | INFO     | . stage-in = 0 s
[2025-11-25 02:01:52] 2025-11-25 01:01:13,856 | INFO     | . payload execution = 82287 s
[2025-11-25 02:01:52] 2025-11-25 01:01:13,856 | INFO     | . stage-out = 3 s
[2025-11-25 02:01:52] 2025-11-25 01:01:13,856 | INFO     | . log creation = 0 s
[2025-11-25 02:01:52] 2025-11-25 01:01:13,856 | INFO     | ..............................
[2025-11-25 02:01:52] 2025-11-25 01:01:13,976 | INFO     | 
[2025-11-25 02:01:52] 2025-11-25 01:01:13,977 | INFO     | job summary report
[2025-11-25 02:01:52] 2025-11-25 01:01:13,977 | INFO     | --------------------------------------------------
[2025-11-25 02:01:52] 2025-11-25 01:01:13,977 | INFO     | PanDA job id: 6893879774
[2025-11-25 02:01:52] 2025-11-25 01:01:13,977 | INFO     | task id: 47523449
[2025-11-25 02:01:52] 2025-11-25 01:01:13,977 | INFO     | errors: (none)
[2025-11-25 02:01:52] 2025-11-25 01:01:13,977 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 02:01:52] 2025-11-25 01:01:13,977 | INFO     | pilot state: finished 
[2025-11-25 02:01:52] 2025-11-25 01:01:13,978 | INFO     | transexitcode: 0
[2025-11-25 02:01:52] 2025-11-25 01:01:13,978 | INFO     | exeerrorcode: 0
[2025-11-25 02:01:52] 2025-11-25 01:01:13,978 | INFO     | exeerrordiag: 
[2025-11-25 02:01:52] 2025-11-25 01:01:13,978 | INFO     | exitcode: 0
[2025-11-25 02:01:52] 2025-11-25 01:01:13,978 | INFO     | exitmsg: OK
[2025-11-25 02:01:52] 2025-11-25 01:01:13,978 | INFO     | cpuconsumptiontime: 332892 s
[2025-11-25 02:01:52] 2025-11-25 01:01:13,978 | INFO     | nevents: 1000
[2025-11-25 02:01:52] 2025-11-25 01:01:13,978 | INFO     | neventsw: 0
[2025-11-25 02:01:52] 2025-11-25 01:01:13,978 | INFO     | pid: 2577
[2025-11-25 02:01:52] 2025-11-25 01:01:13,978 | INFO     | pgrp: 2577
[2025-11-25 02:01:52] 2025-11-25 01:01:13,979 | INFO     | corecount: 8
[2025-11-25 02:01:52] 2025-11-25 01:01:13,979 | INFO     | event service: False
[2025-11-25 02:01:52] 2025-11-25 01:01:13,979 | INFO     | sizes: {0: 2298586, 1: 2298785, 12: 2298785, 23: 2298813, 34: 2298841, 44: 2298869, 55: 2299025, 66: 2299053, 77: 2299081, 87: 2299137, 98: 2299165, 106: 2299735, 
[2025-11-25 02:01:52] 2025-11-25 01:01:13,979 | INFO     | --------------------------------------------------
[2025-11-25 02:01:52] 2025-11-25 01:01:13,979 | INFO     | 
[2025-11-25 02:01:52] 2025-11-25 01:01:13,979 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-11-25 02:01:52] 2025-11-25 01:01:14,020 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,021 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,021 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,021 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,021 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,021 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,021 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,021 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,022 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,022 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,022 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,022 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,022 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,022 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,022 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,022 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,022 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,022 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 02:01:52] 2025-11-25 01:01:14,023 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,023 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 02:01:52] 2025-11-25 01:01:14,023 | INFO     | job 6893879774 has completed (purged errors)
[2025-11-25 02:01:52] 2025-11-25 01:01:14,023 | INFO     | overall cleanup function is called
[2025-11-25 02:01:52] 2025-11-25 01:01:15,041 | INFO     | --- collectZombieJob: --- 10, [2577]
[2025-11-25 02:01:52] 2025-11-25 01:01:15,041 | INFO     | zombie collector waiting for pid 2577
[2025-11-25 02:01:52] 2025-11-25 01:01:15,041 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 02:01:52] 2025-11-25 01:01:15,041 | INFO     | collected zombie processes
[2025-11-25 02:01:52] 2025-11-25 01:01:15,041 | INFO     | will attempt to kill all subprocesses of pid=2577
[2025-11-25 02:01:52] 2025-11-25 01:01:15,109 | INFO     | process IDs to be killed: [2577] (in reverse order)
[2025-11-25 02:01:52] 2025-11-25 01:01:15,210 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 02:01:52] 2025-11-25 01:01:15,210 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 02:01:52] 2025-11-25 01:01:15,212 | INFO     | did not find any defunct processes belonging to 2577
[2025-11-25 02:01:52] 2025-11-25 01:01:15,214 | INFO     | did not find any defunct processes belonging to 2577
[2025-11-25 02:01:52] 2025-11-25 01:01:15,217 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 02:01:52] 2025-11-25 01:01:15,218 | INFO     | ready for new job
[2025-11-25 02:01:52] 2025-11-25 01:01:15,218 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 02:01:52] 2025-11-25 01:01:15,224 | INFO     | ***************************************
[2025-11-25 02:01:52] 2025-11-25 01:01:15,224 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 02:01:52] 2025-11-25 01:01:15,224 | INFO     | ***************************************
[2025-11-25 02:01:52] 2025-11-25 01:01:15,224 | INFO     | 
[2025-11-25 02:01:52] 2025-11-25 01:01:15,225 | INFO     | pilot is running in a VM
[2025-11-25 02:01:52] 2025-11-25 01:01:15,225 | INFO     | architecture information:
[2025-11-25 02:01:52] 2025-11-25 01:01:15,226 | INFO     | executing command: cat /etc/os-release
[2025-11-25 02:01:52] 2025-11-25 01:01:15,266 | INFO     | cat /etc/os-release:
[2025-11-25 02:01:52] NAME="CentOS Linux"
[2025-11-25 02:01:52] VERSION="7 (Core)"
[2025-11-25 02:01:52] ID="centos"
[2025-11-25 02:01:52] ID_LIKE="rhel fedora"
[2025-11-25 02:01:52] VERSION_ID="7"
[2025-11-25 02:01:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 02:01:52] ANSI_COLOR="0;31"
[2025-11-25 02:01:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 02:01:52] HOME_URL="https://www.centos.org/"
[2025-11-25 02:01:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 02:01:52] 
[2025-11-25 02:01:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 02:01:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 02:01:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 02:01:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 02:01:52] 
[2025-11-25 02:01:52] 2025-11-25 01:01:15,267 | INFO     | ***************************************
[2025-11-25 02:01:52] 2025-11-25 01:01:15,770 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-11-25 02:01:52] 2025-11-25 01:01:15,799 | INFO     | sufficient remaining disk space (493021560832 B)
[2025-11-25 02:01:52] 2025-11-25 01:01:15,799 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 02:01:52] 2025-11-25 01:01:15,799 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 02:01:52] 2025-11-25 01:01:15,800 | INFO     | update_server=False
[2025-11-25 02:01:52] 2025-11-25 01:01:15,800 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 02:01:52] 2025-11-25 01:01:15,800 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:01:52] 2025-11-25 01:01:16,015 | INFO     | all data control threads have been joined
[2025-11-25 02:01:52] 2025-11-25 01:01:16,247 | INFO     | all payload control threads have been joined
[2025-11-25 02:01:52] 2025-11-25 01:01:16,518 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:01:52] 2025-11-25 01:01:16,519 | INFO     | aborting loop
[2025-11-25 02:01:52] 2025-11-25 01:01:16,760 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 02:01:52] 2025-11-25 01:01:16,766 | INFO     | all job control threads have been joined
[2025-11-25 02:01:52] 2025-11-25 01:01:16,805 | INFO     | [job] retrieve thread has finished
[2025-11-25 02:01:52] 2025-11-25 01:01:16,806 | INFO     | [job] queue monitor thread has finished
[2025-11-25 02:01:52] 2025-11-25 01:01:16,846 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 02:01:52] 2025-11-25 01:01:16,852 | INFO     | [data] copytool_in thread has finished
[2025-11-25 02:01:52] 2025-11-25 01:01:16,897 | INFO     | [payload] failed_post thread has finished
[2025-11-25 02:01:52] 2025-11-25 01:01:17,020 | INFO     | [data] control thread has finished
[2025-11-25 02:01:52] 2025-11-25 01:01:17,096 | INFO     | [job] validate thread has finished
[2025-11-25 02:01:52] 2025-11-25 01:01:17,253 | INFO     | [payload] control thread has finished
[2025-11-25 02:01:52] 2025-11-25 01:01:17,502 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 02:01:52] 2025-11-25 01:01:17,524 | INFO     | [job] job monitor thread has finished
[2025-11-25 02:01:52] 2025-11-25 01:01:17,772 | INFO     | [job] control thread has finished
[2025-11-25 02:01:52] 2025-11-25 01:01:18,001 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 02:01:52] 2025-11-25 01:01:18,141 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 02:01:52] 2025-11-25 01:01:18,390 | INFO     | [payload] validate_post thread has finished
[2025-11-25 02:01:52] 2025-11-25 01:01:18,766 | INFO     | [data] copytool_out thread has finished
[2025-11-25 02:01:52] 2025-11-25 01:01:18,874 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 02:01:52] 2025-11-25 01:01:22,881 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 02:01:52] 2025-11-25 01:01:45,468 | INFO     | [monitor] cgroup control has ended
[2025-11-25 02:01:52] 2025-11-25 01:01:45,888 | INFO     | PID=28438 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 02:01:52] 2025-11-25 01:01:45,889 | INFO     | .. there are 2 such processes running
[2025-11-25 02:01:52] 2025-11-25 01:01:45,890 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 02:01:52] 2025-11-25 01:01:45,890 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 02:01:52] 2025-11-25 01:01:45,890 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 02:01:52] 2025-11-25 01:01:46,642 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140450765481792)>', '<ExcThread(monitor, started 140450153342720)>']
[2025-11-25 02:01:52] 2025-11-25 01:01:46,895 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 02:01:52] 2025-11-25 01:01:46,896 | INFO     | [monitor] control thread has ended
[2025-11-25 02:01:52] 2025-11-25 01:01:51,662 | INFO     | all workflow threads have been joined
[2025-11-25 02:01:52] 2025-11-25 01:01:51,663 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 02:01:52] 2025-11-25 01:01:51,663 | INFO     | traces error code: 0
[2025-11-25 02:01:52] 2025-11-25 01:01:51,663 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 02:01:52] 2025-11-25 01:01:51,891 [wrapper] ==== pilot stdout END ====
[2025-11-25 02:01:52] 2025-11-25 01:01:51,899 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 02:01:52] 2025-11-25 01:01:51,912 [wrapper] pilotpid: 28438
[2025-11-25 02:01:52] 2025-11-25 01:01:51,924 [wrapper] Pilot exit status: 0
[2025-11-25 02:01:52] 2025-11-25 01:01:51,958 [wrapper] pandaids: 6893879774
[2025-11-25 02:01:52] 2025-11-25 01:01:52,007 [wrapper] cleanup supervisor_pilot 27765 28439
[2025-11-25 02:01:52] 2025-11-25 01:01:52,013 [wrapper] Test setup, not cleaning
[2025-11-25 02:01:52] 2025-11-25 01:01:52,021 [wrapper] apfmon messages muted
[2025-11-25 02:01:52] 2025-11-25 01:01:52,026 [wrapper] ==== wrapper stdout END ====
[2025-11-25 02:01:52] 2025-11-25 01:01:52,031 [wrapper] ==== wrapper stderr END ====
[2025-11-25 02:01:52]  *** Error codes and diagnostics ***
[2025-11-25 02:01:52]     "exeErrorCode": 0,
[2025-11-25 02:01:52]     "exeErrorDiag": "",
[2025-11-25 02:01:52]     "pilotErrorCode": 0,
[2025-11-25 02:01:52]     "pilotErrorDiag": "",
[2025-11-25 02:01:52]  *** Listing of results directory ***
[2025-11-25 02:01:52] total 1317200
[2025-11-25 02:01:52] -rw-r--r--. 1 boinc boinc    576529 Nov 20 20:10 pilot3.tar.gz
[2025-11-25 02:01:52] -rw-r--r--. 1 boinc boinc      5112 Nov 20 20:18 queuedata.json
[2025-11-25 02:01:52] -rwx------. 1 boinc boinc     36292 Nov 20 20:19 runpilot2-wrapper.sh
[2025-11-25 02:01:52] -rw-r--r--. 1 boinc boinc       100 Nov 24 03:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 02:01:52] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 03:00 run_atlas
[2025-11-25 02:01:52] -rw-r--r--. 1 boinc boinc       105 Nov 24 03:00 job.xml
[2025-11-25 02:01:52] -rw-r--r--. 1 boinc boinc      6394 Nov 24 03:00 init_data.xml
[2025-11-25 02:01:52] -rw-r--r--. 2 boinc boinc 409435360 Nov 24 03:00 EVNT.47493127._000826.pool.root.1
[2025-11-25 02:01:52] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:00 start_atlas.sh
[2025-11-25 02:01:52] drwxrwx--x. 2 boinc boinc        68 Nov 24 03:00 shared
[2025-11-25 02:01:52] -rw-r--r--. 2 boinc boinc    590104 Nov 24 03:00 input.tar.gz
[2025-11-25 02:01:52] -rw-r--r--. 1 boinc boinc         0 Nov 24 03:00 boinc_lockfile
[2025-11-25 02:01:52] -rw-r--r--. 1 boinc boinc      2785 Nov 24 03:00 pandaJob.out
[2025-11-25 02:01:52] -rw-------. 1 boinc boinc    989786 Nov 24 03:03 agis_schedconf.cvmfs.json
[2025-11-25 02:01:52] drwx------. 5 boinc boinc      4096 Nov 24 03:03 pilot3
[2025-11-25 02:01:52] -rw-r--r--. 1 boinc boinc       533 Nov 25 01:49 boinc_task_state.xml
[2025-11-25 02:01:52] -rw-------. 1 boinc boinc 908561593 Nov 25 02:00 HITS.47523449._008253.pool.root.1
[2025-11-25 02:01:52] -rw-------. 1 boinc boinc      1032 Nov 25 02:00 memory_monitor_summary.json
[2025-11-25 02:01:52] -rw-------. 1 boinc boinc   1516227 Nov 25 02:01 agis_ddmendpoints.agis.ALL.json
[2025-11-25 02:01:52] -rw-------. 1 boinc boinc   2451961 Nov 25 02:01 log.47523449._008253.job.log.tgz.1
[2025-11-25 02:01:52] -rw-------. 1 boinc boinc      8624 Nov 25 02:01 heartbeat.json
[2025-11-25 02:01:52] -rw-------. 1 boinc boinc        95 Nov 25 02:01 pilot_heartbeat.json
[2025-11-25 02:01:52] -rw-r--r--. 1 boinc boinc      8192 Nov 25 02:01 boinc_mmap_file
[2025-11-25 02:01:52] -rw-r--r--. 1 boinc boinc        29 Nov 25 02:01 wrapper_checkpoint.txt
[2025-11-25 02:01:52] -rw-------. 1 boinc boinc      4885 Nov 25 02:01 pilotlog.txt
[2025-11-25 02:01:52] -rw-------. 1 boinc boinc  11007558 Nov 25 02:01 log.47523449._008253.job.log.1
[2025-11-25 02:01:52] -rw-------. 1 boinc boinc       353 Nov 25 02:01 output.list
[2025-11-25 02:01:52] -rw-r--r--. 1 boinc boinc       620 Nov 25 02:01 runtime_log
[2025-11-25 02:01:52] -rw-------. 1 boinc boinc  13475840 Nov 25 02:01 result.tar.gz
[2025-11-25 02:01:52] -rw-------. 1 boinc boinc       662 Nov 25 02:01 UqqNDmvMPg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmO0GKDmVw21tm.diag
[2025-11-25 02:01:52] -rw-r--r--. 1 boinc boinc      8833 Nov 25 02:01 runtime_log.err
[2025-11-25 02:01:52] -rw-r--r--. 1 boinc boinc     21215 Nov 25 02:01 stderr.txt
[2025-11-25 02:01:52] HITS file was successfully produced:
[2025-11-25 02:01:52] -rw-------. 1 boinc boinc 908561593 Nov 25 02:00 shared/HITS.pool.root.1
[2025-11-25 02:01:52]  *** Contents of shared directory: ***
[2025-11-25 02:01:52] total 1300864
[2025-11-25 02:01:52] -rw-r--r--. 2 boinc boinc 409435360 Nov 24 03:00 ATLAS.root_0
[2025-11-25 02:01:52] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:00 start_atlas.sh
[2025-11-25 02:01:52] -rw-r--r--. 2 boinc boinc    590104 Nov 24 03:00 input.tar.gz
[2025-11-25 02:01:52] -rw-------. 1 boinc boinc 908561593 Nov 25 02:00 HITS.pool.root.1
[2025-11-25 02:01:52] -rw-------. 1 boinc boinc  13475840 Nov 25 02:01 result.tar.gz
02:01:54 (24634): run_atlas exited; CPU time 333106.042838
02:01:54 (24634): called boinc_finish(0)

</stderr_txt>
]]>

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