Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:14:51 (20066): wrapper (7.7.26015): starting
03:14:51 (20066): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:14:51] Arguments: --nthreads 8
[2025-11-24 03:14:51] Threads: 8
[2025-11-24 03:14:51] Checking for CVMFS
[2025-11-24 03:14:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:14:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:14:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:14:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:14:53] 2.11.2.0 1205 281703 141812 153228 2 85 15524958 25165824 4632 130560 3 129197307 99.873 72753470 2966 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 03:14:53] CVMFS is ok
[2025-11-24 03:14:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:14:54] Checking for apptainer binary...
[2025-11-24 03:14:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:14:54] Running /usr/bin/apptainer --version
[2025-11-24 03:14:54] apptainer version 1.3.2-1.el7
[2025-11-24 03:14:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:15:00] cg-vwn325.simple-grid.lan
[2025-11-24 03:15:00] apptainer works
[2025-11-24 03:15:00] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:15:00] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:15:00] Starting ATLAS job with PandaID=6893877300
[2025-11-24 03:15:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 03:13:31]  *** The last 200 lines of the pilot log: ***
[2025-11-25 03:13:31] 2025-11-25 02:12:19,305 | INFO     | job 6893877300 has finished - writing final server update
[2025-11-25 03:13:31] 2025-11-25 02:12:19,305 | INFO     | total number of processed events: 1000 (read)
[2025-11-25 03:13:31] 2025-11-25 02:12:19,306 | INFO     | executing command: lscpu
[2025-11-25 03:13:31] 2025-11-25 02:12:19,334 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 03:13:31] 2025-11-25 02:12:20,036 | INFO     | time since job start (86006s) is within the limit (172800.0s)
[2025-11-25 03:13:31] 2025-11-25 02:12:21,387 | INFO     | monitor loop #5727: job 0:6893877300 is in state 'finished'
[2025-11-25 03:13:31] 2025-11-25 02:12:21,387 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:13:31] 2025-11-25 02:12:22,042 | INFO     | time since job start (86008s) is within the limit (172800.0s)
[2025-11-25 03:13:31] 2025-11-25 02:12:23,890 | INFO     | monitor loop #5728: job 0:6893877300 is in state 'finished'
[2025-11-25 03:13:31] 2025-11-25 02:12:23,891 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:13:31] 2025-11-25 02:12:24,047 | INFO     | time since job start (86010s) is within the limit (172800.0s)
[2025-11-25 03:13:31] 2025-11-25 02:12:26,053 | INFO     | time since job start (86012s) is within the limit (172800.0s)
[2025-11-25 03:13:31] 2025-11-25 02:12:26,232 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 03:13:31] 2025-11-25 02:12:26,233 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 03:13:31] 2025-11-25 02:12:26,236 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6893877300/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 03:13:31] 2025-11-25 02:12:26,237 | INFO     | extracted standard info from prmon json
[2025-11-25 03:13:31] 2025-11-25 02:12:26,237 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 03:13:31] 2025-11-25 02:12:26,237 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 03:13:31] 2025-11-25 02:12:26,263 | INFO     | fitting pss+swap vs Time
[2025-11-25 03:13:31] 2025-11-25 02:12:26,265 | INFO     | sum of square deviations: 854522246680.7513
[2025-11-25 03:13:31] 2025-11-25 02:12:26,315 | INFO     | sum of deviations: 4385608632745.344
[2025-11-25 03:13:31] 2025-11-25 02:12:26,315 | INFO     | mean x: 1763993978.6355207
[2025-11-25 03:13:31] 2025-11-25 02:12:26,315 | INFO     | mean y: 2851876.67189729
[2025-11-25 03:13:31] 2025-11-25 02:12:26,315 | INFO     | intersect: -9050379037.870901
[2025-11-25 03:13:31] 2025-11-25 02:12:26,317 | INFO     | chi2: 19.995669999857743
[2025-11-25 03:13:31] 2025-11-25 02:12:26,319 | INFO     | sum of square deviations: 845412784681.7808
[2025-11-25 03:13:31] 2025-11-25 02:12:26,375 | INFO     | sum of deviations: 4844739115390.277
[2025-11-25 03:13:31] 2025-11-25 02:12:26,376 | INFO     | mean x: 1763993826.1395848
[2025-11-25 03:13:31] 2025-11-25 02:12:26,376 | INFO     | mean y: 2859561.496062992
[2025-11-25 03:13:31] 2025-11-25 02:12:26,376 | INFO     | intersect: -10105918119.246262
[2025-11-25 03:13:31] 2025-11-25 02:12:26,377 | INFO     | chi2: 16.95795308734399
[2025-11-25 03:13:31] 2025-11-25 02:12:26,378 | INFO     | current chi2=16.95795308734399 (change=15.191873603311931 %)
[2025-11-25 03:13:31] 2025-11-25 02:12:26,378 | INFO     | right removable region: 1396
[2025-11-25 03:13:31] 2025-11-25 02:12:26,380 | INFO     | sum of square deviations: 845411813561.7809
[2025-11-25 03:13:31] 2025-11-25 02:12:26,399 | INFO     | monitor loop #5729: job 0:6893877300 is in state 'finished'
[2025-11-25 03:13:31] 2025-11-25 02:12:26,410 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:13:31] 2025-11-25 02:12:26,438 | INFO     | sum of deviations: 3790091947991.5767
[2025-11-25 03:13:31] 2025-11-25 02:12:26,438 | INFO     | mean x: 1763994131.1395848
[2025-11-25 03:13:31] 2025-11-25 02:12:26,438 | INFO     | mean y: 2861844.7508947747
[2025-11-25 03:13:31] 2025-11-25 02:12:26,438 | INFO     | intersect: -7905355009.434289
[2025-11-25 03:13:31] 2025-11-25 02:12:26,440 | INFO     | chi2: 15.096594786670613
[2025-11-25 03:13:31] 2025-11-25 02:12:26,440 | INFO     | current chi2=15.096594786670613 (change=24.500680463430253 %)
[2025-11-25 03:13:31] 2025-11-25 02:12:26,440 | INFO     | left removable region: 10
[2025-11-25 03:13:31] 2025-11-25 02:12:26,443 | INFO     | sum of square deviations: 825598421023.8813
[2025-11-25 03:13:31] 2025-11-25 02:12:26,499 | INFO     | sum of deviations: 3847710812786.881
[2025-11-25 03:13:31] 2025-11-25 02:12:26,499 | INFO     | mean x: 1763994100.6486292
[2025-11-25 03:13:31] 2025-11-25 02:12:26,499 | INFO     | mean y: 2880117.621933622
[2025-11-25 03:13:31] 2025-11-25 02:12:26,500 | INFO     | intersect: -8218234412.0552845
[2025-11-25 03:13:31] 2025-11-25 02:12:26,501 | INFO     | chi2: 7.707236609273883
[2025-11-25 03:13:31] 2025-11-25 02:12:26,502 | INFO     | current memory leak: 4.66 B/s (using 1386 data points, chi2=7.71)
[2025-11-25 03:13:31] 2025-11-25 02:12:26,505 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-25 03:13:31] 2025-11-25 02:12:26,505 | INFO     | ..............................
[2025-11-25 03:13:31] 2025-11-25 02:12:26,505 | INFO     | . Timing measurements:
[2025-11-25 03:13:31] 2025-11-25 02:12:26,505 | INFO     | . get job = 0 s
[2025-11-25 03:13:31] 2025-11-25 02:12:26,505 | INFO     | . initial setup = 6 s
[2025-11-25 03:13:31] 2025-11-25 02:12:26,505 | INFO     | . payload setup = 156 s
[2025-11-25 03:13:31] 2025-11-25 02:12:26,506 | INFO     | . stage-in = 0 s
[2025-11-25 03:13:31] 2025-11-25 02:12:26,506 | INFO     | . payload execution = 85644 s
[2025-11-25 03:13:31] 2025-11-25 02:12:26,506 | INFO     | . stage-out = 3 s
[2025-11-25 03:13:31] 2025-11-25 02:12:26,506 | INFO     | . log creation = 0 s
[2025-11-25 03:13:31] 2025-11-25 02:12:26,506 | INFO     | ..............................
[2025-11-25 03:13:31] 2025-11-25 02:12:26,971 | INFO     | 
[2025-11-25 03:13:31] 2025-11-25 02:12:26,971 | INFO     | job summary report
[2025-11-25 03:13:31] 2025-11-25 02:12:26,971 | INFO     | --------------------------------------------------
[2025-11-25 03:13:31] 2025-11-25 02:12:26,971 | INFO     | PanDA job id: 6893877300
[2025-11-25 03:13:31] 2025-11-25 02:12:26,971 | INFO     | task id: 47523449
[2025-11-25 03:13:31] 2025-11-25 02:12:26,971 | INFO     | errors: (none)
[2025-11-25 03:13:31] 2025-11-25 02:12:26,971 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 03:13:31] 2025-11-25 02:12:26,972 | INFO     | pilot state: finished 
[2025-11-25 03:13:31] 2025-11-25 02:12:26,972 | INFO     | transexitcode: 0
[2025-11-25 03:13:31] 2025-11-25 02:12:26,972 | INFO     | exeerrorcode: 0
[2025-11-25 03:13:31] 2025-11-25 02:12:26,972 | INFO     | exeerrordiag: 
[2025-11-25 03:13:31] 2025-11-25 02:12:26,972 | INFO     | exitcode: 0
[2025-11-25 03:13:31] 2025-11-25 02:12:26,972 | INFO     | exitmsg: OK
[2025-11-25 03:13:31] 2025-11-25 02:12:26,972 | INFO     | cpuconsumptiontime: 345882 s
[2025-11-25 03:13:31] 2025-11-25 02:12:26,972 | INFO     | nevents: 1000
[2025-11-25 03:13:31] 2025-11-25 02:12:26,972 | INFO     | neventsw: 0
[2025-11-25 03:13:31] 2025-11-25 02:12:26,972 | INFO     | pid: 30396
[2025-11-25 03:13:31] 2025-11-25 02:12:26,972 | INFO     | pgrp: 30396
[2025-11-25 03:13:31] 2025-11-25 02:12:26,972 | INFO     | corecount: 8
[2025-11-25 03:13:31] 2025-11-25 02:12:26,973 | INFO     | event service: False
[2025-11-25 03:13:31] 2025-11-25 02:12:26,973 | INFO     | sizes: {0: 2297927, 1: 2298613, 2: 2298812, 12: 2298812, 23: 2298840, 34: 2298868, 45: 2299024, 55: 2299052, 66: 2299080, 77: 2299108, 88: 2299164, 98: 2299472, 10
[2025-11-25 03:13:31] 2025-11-25 02:12:26,973 | INFO     | --------------------------------------------------
[2025-11-25 03:13:31] 2025-11-25 02:12:26,973 | INFO     | 
[2025-11-25 03:13:31] 2025-11-25 02:12:26,973 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-11-25 03:13:31] 2025-11-25 02:12:27,029 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,029 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,029 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,030 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,030 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,030 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,030 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,030 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,030 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,030 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,031 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,031 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,031 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,031 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,031 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,031 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,031 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,031 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 03:13:31] 2025-11-25 02:12:27,032 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,032 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 03:13:31] 2025-11-25 02:12:27,032 | INFO     | job 6893877300 has completed (purged errors)
[2025-11-25 03:13:31] 2025-11-25 02:12:27,032 | INFO     | overall cleanup function is called
[2025-11-25 03:13:31] 2025-11-25 02:12:28,049 | INFO     | --- collectZombieJob: --- 10, [30396]
[2025-11-25 03:13:31] 2025-11-25 02:12:28,050 | INFO     | zombie collector waiting for pid 30396
[2025-11-25 03:13:31] 2025-11-25 02:12:28,050 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 03:13:31] 2025-11-25 02:12:28,050 | INFO     | collected zombie processes
[2025-11-25 03:13:31] 2025-11-25 02:12:28,050 | INFO     | will attempt to kill all subprocesses of pid=30396
[2025-11-25 03:13:31] 2025-11-25 02:12:28,129 | INFO     | process IDs to be killed: [30396] (in reverse order)
[2025-11-25 03:13:31] 2025-11-25 02:12:28,216 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 03:13:31] 2025-11-25 02:12:28,216 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 03:13:31] 2025-11-25 02:12:28,219 | INFO     | did not find any defunct processes belonging to 30396
[2025-11-25 03:13:31] 2025-11-25 02:12:28,221 | INFO     | did not find any defunct processes belonging to 30396
[2025-11-25 03:13:31] 2025-11-25 02:12:28,226 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 03:13:31] 2025-11-25 02:12:28,226 | INFO     | ready for new job
[2025-11-25 03:13:31] 2025-11-25 02:12:28,226 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 03:13:31] 2025-11-25 02:12:28,232 | INFO     | ***************************************
[2025-11-25 03:13:31] 2025-11-25 02:12:28,232 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 03:13:31] 2025-11-25 02:12:28,233 | INFO     | ***************************************
[2025-11-25 03:13:31] 2025-11-25 02:12:28,233 | INFO     | 
[2025-11-25 03:13:31] 2025-11-25 02:12:28,233 | INFO     | pilot is running in a VM
[2025-11-25 03:13:31] 2025-11-25 02:12:28,233 | INFO     | architecture information:
[2025-11-25 03:13:31] 2025-11-25 02:12:28,235 | INFO     | executing command: cat /etc/os-release
[2025-11-25 03:13:31] 2025-11-25 02:12:28,263 | INFO     | cat /etc/os-release:
[2025-11-25 03:13:31] NAME="CentOS Linux"
[2025-11-25 03:13:31] VERSION="7 (Core)"
[2025-11-25 03:13:31] ID="centos"
[2025-11-25 03:13:31] ID_LIKE="rhel fedora"
[2025-11-25 03:13:31] VERSION_ID="7"
[2025-11-25 03:13:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 03:13:31] ANSI_COLOR="0;31"
[2025-11-25 03:13:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 03:13:31] HOME_URL="https://www.centos.org/"
[2025-11-25 03:13:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 03:13:31] 
[2025-11-25 03:13:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 03:13:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 03:13:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 03:13:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 03:13:31] 
[2025-11-25 03:13:31] 2025-11-25 02:12:28,264 | INFO     | ***************************************
[2025-11-25 03:13:31] 2025-11-25 02:12:28,767 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-11-25 03:13:31] 2025-11-25 02:12:28,806 | INFO     | sufficient remaining disk space (492687065088 B)
[2025-11-25 03:13:31] 2025-11-25 02:12:28,806 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 03:13:31] 2025-11-25 02:12:28,807 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 03:13:31] 2025-11-25 02:12:28,807 | INFO     | update_server=False
[2025-11-25 03:13:31] 2025-11-25 02:12:28,807 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 03:13:31] 2025-11-25 02:12:28,925 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 03:13:31] 2025-11-25 02:12:28,925 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 03:13:31] 2025-11-25 02:12:28,925 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:13:31] 2025-11-25 02:12:28,925 | INFO     | will abort loop
[2025-11-25 03:13:31] 2025-11-25 02:12:28,986 | INFO     | all job control threads have been joined
[2025-11-25 03:13:31] 2025-11-25 02:12:29,588 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 03:13:31] 2025-11-25 02:12:29,691 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 03:13:31] 2025-11-25 02:12:29,813 | INFO     | [job] retrieve thread has finished
[2025-11-25 03:13:31] 2025-11-25 02:12:29,879 | INFO     | all data control threads have been joined
[2025-11-25 03:13:31] 2025-11-25 02:12:29,880 | INFO     | [payload] failed_post thread has finished
[2025-11-25 03:13:31] 2025-11-25 02:12:29,931 | INFO     | [job] job monitor thread has finished
[2025-11-25 03:13:31] 2025-11-25 02:12:29,991 | INFO     | [job] control thread has finished
[2025-11-25 03:13:31] 2025-11-25 02:12:29,993 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 03:13:31] 2025-11-25 02:12:30,012 | INFO     | [data] copytool_in thread has finished
[2025-11-25 03:13:31] 2025-11-25 02:12:30,193 | INFO     | all payload control threads have been joined
[2025-11-25 03:13:31] 2025-11-25 02:12:30,204 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 03:13:31] 2025-11-25 02:12:30,336 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 03:13:31] 2025-11-25 02:12:30,479 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 03:13:31] 2025-11-25 02:12:30,496 | INFO     | [job] validate thread has finished
[2025-11-25 03:13:31] 2025-11-25 02:12:30,885 | INFO     | [data] control thread has finished
[2025-11-25 03:13:31] 2025-11-25 02:12:31,200 | INFO     | [payload] control thread has finished
[2025-11-25 03:13:31] 2025-11-25 02:12:31,357 | INFO     | [payload] validate_post thread has finished
[2025-11-25 03:13:31] 2025-11-25 02:12:31,594 | INFO     | [data] copytool_out thread has finished
[2025-11-25 03:13:31] 2025-11-25 02:12:31,640 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:13:31] 2025-11-25 02:12:32,646 | INFO     | [job] queue monitor thread has finished
[2025-11-25 03:13:31] 2025-11-25 02:12:33,697 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 03:13:31] 2025-11-25 02:12:59,163 | INFO     | PID=23837 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 03:13:31] 2025-11-25 02:12:59,163 | INFO     | .. there are 2 such processes running
[2025-11-25 03:13:31] 2025-11-25 02:12:59,164 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 03:13:31] 2025-11-25 02:12:59,164 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 03:13:31] 2025-11-25 02:12:59,164 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 03:13:31] 2025-11-25 02:13:24,194 | INFO     | [monitor] cgroup control has ended
[2025-11-25 03:13:31] 2025-11-25 02:13:25,568 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139939370612544)>', '<ExcThread(monitor, started 139938909624064)>']
[2025-11-25 03:13:31] 2025-11-25 02:13:26,296 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 03:13:31] 2025-11-25 02:13:26,296 | INFO     | [monitor] control thread has ended
[2025-11-25 03:13:31] 2025-11-25 02:13:30,581 | INFO     | all workflow threads have been joined
[2025-11-25 03:13:31] 2025-11-25 02:13:30,582 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 03:13:31] 2025-11-25 02:13:30,582 | INFO     | traces error code: 0
[2025-11-25 03:13:31] 2025-11-25 02:13:30,582 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 03:13:31] 2025-11-25 02:13:30,745 [wrapper] ==== pilot stdout END ====
[2025-11-25 03:13:31] 2025-11-25 02:13:30,751 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 03:13:31] 2025-11-25 02:13:30,756 [wrapper] pilotpid: 23837
[2025-11-25 03:13:31] 2025-11-25 02:13:30,768 [wrapper] Pilot exit status: 0
[2025-11-25 03:13:31] 2025-11-25 02:13:30,793 [wrapper] pandaids: 6893877300
[2025-11-25 03:13:31] 2025-11-25 02:13:30,850 [wrapper] cleanup supervisor_pilot  6702 23838
[2025-11-25 03:13:31] 2025-11-25 02:13:30,855 [wrapper] Test setup, not cleaning
[2025-11-25 03:13:31] 2025-11-25 02:13:30,860 [wrapper] apfmon messages muted
[2025-11-25 03:13:31] 2025-11-25 02:13:30,864 [wrapper] ==== wrapper stdout END ====
[2025-11-25 03:13:31] 2025-11-25 02:13:30,872 [wrapper] ==== wrapper stderr END ====
[2025-11-25 03:13:31]  *** Error codes and diagnostics ***
[2025-11-25 03:13:31]     "exeErrorCode": 0,
[2025-11-25 03:13:31]     "exeErrorDiag": "",
[2025-11-25 03:13:31]     "pilotErrorCode": 0,
[2025-11-25 03:13:31]     "pilotErrorDiag": "",
[2025-11-25 03:13:31]  *** Listing of results directory ***
[2025-11-25 03:13:31] total 1341484
[2025-11-25 03:13:31] -rw-r--r--. 1 boinc boinc    576529 Nov 20 19:04 pilot3.tar.gz
[2025-11-25 03:13:31] -rwx------. 1 boinc boinc     36292 Nov 20 19:42 runpilot2-wrapper.sh
[2025-11-25 03:13:31] -rw-r--r--. 1 boinc boinc      5112 Nov 20 19:42 queuedata.json
[2025-11-25 03:13:31] -rw-r--r--. 1 boinc boinc       100 Nov 24 03:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 03:13:31] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 03:14 run_atlas
[2025-11-25 03:13:31] -rw-r--r--. 1 boinc boinc       105 Nov 24 03:14 job.xml
[2025-11-25 03:13:31] -rw-r--r--. 2 boinc boinc 412282425 Nov 24 03:14 EVNT.47493127._000799.pool.root.1
[2025-11-25 03:13:31] -rw-r--r--. 1 boinc boinc      6392 Nov 24 03:14 init_data.xml
[2025-11-25 03:13:31] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:14 start_atlas.sh
[2025-11-25 03:13:31] drwxrwx--x. 2 boinc boinc        68 Nov 24 03:14 shared
[2025-11-25 03:13:31] -rw-r--r--. 2 boinc boinc    590097 Nov 24 03:14 input.tar.gz
[2025-11-25 03:13:31] -rw-r--r--. 1 boinc boinc         0 Nov 24 03:14 boinc_lockfile
[2025-11-25 03:13:31] -rw-r--r--. 1 boinc boinc      2784 Nov 24 03:15 pandaJob.out
[2025-11-25 03:13:31] -rw-------. 1 boinc boinc    989786 Nov 24 03:18 agis_schedconf.cvmfs.json
[2025-11-25 03:13:31] drwx------. 5 boinc boinc      4096 Nov 24 03:18 pilot3
[2025-11-25 03:13:31] -rw-r--r--. 1 boinc boinc       533 Nov 25 02:55 boinc_task_state.xml
[2025-11-25 03:13:31] -rw-------. 1 boinc boinc 929617481 Nov 25 03:11 HITS.47523449._007983.pool.root.1
[2025-11-25 03:13:31] -rw-------. 1 boinc boinc        95 Nov 25 03:12 pilot_heartbeat.json
[2025-11-25 03:13:31] -rw-------. 1 boinc boinc      1032 Nov 25 03:12 memory_monitor_summary.json
[2025-11-25 03:13:31] -rw-------. 1 boinc boinc   1516227 Nov 25 03:12 agis_ddmendpoints.agis.ALL.json
[2025-11-25 03:13:31] -rw-------. 1 boinc boinc   2494184 Nov 25 03:12 log.47523449._007983.job.log.tgz.1
[2025-11-25 03:13:31] -rw-------. 1 boinc boinc      8626 Nov 25 03:12 heartbeat.json
[2025-11-25 03:13:31] -rw-r--r--. 1 boinc boinc      8192 Nov 25 03:13 boinc_mmap_file
[2025-11-25 03:13:31] -rw-r--r--. 1 boinc boinc        29 Nov 25 03:13 wrapper_checkpoint.txt
[2025-11-25 03:13:31] -rw-------. 1 boinc boinc      5071 Nov 25 03:13 pilotlog.txt
[2025-11-25 03:13:31] -rw-------. 1 boinc boinc  11447557 Nov 25 03:13 log.47523449._007983.job.log.1
[2025-11-25 03:13:31] -rw-------. 1 boinc boinc       353 Nov 25 03:13 output.list
[2025-11-25 03:13:31] -rw-r--r--. 1 boinc boinc       620 Nov 25 03:13 runtime_log
[2025-11-25 03:13:31] -rw-------. 1 boinc boinc  13957120 Nov 25 03:13 result.tar.gz
[2025-11-25 03:13:31] -rw-------. 1 boinc boinc       662 Nov 25 03:13 SHVLDmxmOg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPPIKDmXvJdDo.diag
[2025-11-25 03:13:31] -rw-r--r--. 1 boinc boinc      8833 Nov 25 03:13 runtime_log.err
[2025-11-25 03:13:31] -rw-r--r--. 1 boinc boinc     21444 Nov 25 03:13 stderr.txt
[2025-11-25 03:13:31] HITS file was successfully produced:
[2025-11-25 03:13:31] -rw-------. 1 boinc boinc 929617481 Nov 25 03:11 shared/HITS.pool.root.1
[2025-11-25 03:13:31]  *** Contents of shared directory: ***
[2025-11-25 03:13:31] total 1324680
[2025-11-25 03:13:31] -rw-r--r--. 2 boinc boinc 412282425 Nov 24 03:14 ATLAS.root_0
[2025-11-25 03:13:31] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:14 start_atlas.sh
[2025-11-25 03:13:31] -rw-r--r--. 2 boinc boinc    590097 Nov 24 03:14 input.tar.gz
[2025-11-25 03:13:31] -rw-------. 1 boinc boinc 929617481 Nov 25 03:11 HITS.pool.root.1
[2025-11-25 03:13:31] -rw-------. 1 boinc boinc  13957120 Nov 25 03:13 result.tar.gz
03:13:32 (20066): run_atlas exited; CPU time 346192.164567
03:13:32 (20066): called boinc_finish(0)

</stderr_txt>
]]>

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