Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:20:20 (2352446): wrapper (7.7.26015): starting
00:20:20 (2352446): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 00:20:20] Arguments: --nthreads 8
[2025-11-21 00:20:20] Threads: 8
[2025-11-21 00:20:20] Checking for CVMFS
[2025-11-21 00:20:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:20:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:20:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:20:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:20:20] 2.13.2.0 4277 23499 204908 153110 0 64 35804974 39288833 4255 16776704 0 11216942 99.625 7671408 28298 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 00:20:20] CVMFS is ok
[2025-11-21 00:20:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:20:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:20:20] Further information can be found at the LHC@home message board.
[2025-11-21 00:20:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:20:20] Checking for apptainer binary...
[2025-11-21 00:20:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:20:20] Running /usr/bin/apptainer --version
[2025-11-21 00:20:20] apptainer version 1.4.4-1.el9
[2025-11-21 00:20:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:20:21] c-211-18.aglt2.org
[2025-11-21 00:20:21] apptainer works
[2025-11-21 00:20:21] Set ATHENA_PROC_NUMBER=8
[2025-11-21 00:20:21] Set ATHENA_CORE_NUMBER=8
[2025-11-21 00:20:21] Starting ATLAS job with PandaID=6893877303
[2025-11-21 00:20:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:48:53 (2560055): wrapper (7.7.26015): starting
02:48:53 (2560055): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 02:48:53] Arguments: --nthreads 8
[2025-11-21 02:48:53] Threads: 8
[2025-11-21 02:48:53] This job has been restarted, cleaning up previous attempt
[2025-11-21 02:48:53] Checking for CVMFS
[2025-11-21 02:48:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 02:48:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 02:48:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 02:48:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 02:48:54] 2.13.2.0 4277 23648 201820 153113 3 56 35973097 39288833 0 16776704 0 11475028 99.632 7675328 28298 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 02:48:54] CVMFS is ok
[2025-11-21 02:48:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 02:48:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 02:48:54] Further information can be found at the LHC@home message board.
[2025-11-21 02:48:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 02:48:54] Checking for apptainer binary...
[2025-11-21 02:48:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 02:48:54] Running /usr/bin/apptainer --version
[2025-11-21 02:48:54] apptainer version 1.4.4-1.el9
[2025-11-21 02:48:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 02:48:55] c-211-18.aglt2.org
[2025-11-21 02:48:55] apptainer works
[2025-11-21 02:48:55] Set ATHENA_PROC_NUMBER=8
[2025-11-21 02:48:55] Set ATHENA_CORE_NUMBER=8
[2025-11-21 02:48:55] Starting ATLAS job with PandaID=6893877303
[2025-11-21 02:48:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 00:02:43]  *** The last 200 lines of the pilot log: ***
[2025-11-23 00:02:43] 2025-11-22 22:33:35,041 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2699.99645
[2025-11-23 00:02:43] 2025-11-22 22:33:35,050 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6893877303/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 00:02:43] 2025-11-22 22:33:35,051 | INFO     | extracted standard info from prmon json
[2025-11-23 00:02:43] 2025-11-22 22:33:35,051 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 00:02:43] 2025-11-22 22:33:35,051 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 00:02:43] 2025-11-22 22:33:35,120 | INFO     | fitting pss+swap vs Time
[2025-11-23 00:02:43] 2025-11-22 22:33:35,124 | INFO     | sum of square deviations: 3704458462332.8276
[2025-11-23 00:02:43] 2025-11-22 22:33:35,298 | INFO     | sum of deviations: 8561163569310.812
[2025-11-23 00:02:43] 2025-11-22 22:33:35,298 | INFO     | mean x: 1763781084.816273
[2025-11-23 00:02:43] 2025-11-22 22:33:35,298 | INFO     | mean y: 3024805.139982502
[2025-11-23 00:02:43] 2025-11-22 22:33:35,299 | INFO     | intersect: -4073149491.617975
[2025-11-23 00:02:43] 2025-11-22 22:33:35,302 | INFO     | chi2: 9.651300628015498
[2025-11-23 00:02:43] 2025-11-22 22:33:35,306 | INFO     | sum of square deviations: 3680207696291.928
[2025-11-23 00:02:43] 2025-11-22 22:33:35,464 | INFO     | sum of deviations: 9354432294568.78
[2025-11-23 00:02:43] 2025-11-22 22:33:35,464 | INFO     | mean x: 1763780932.324419
[2025-11-23 00:02:43] 2025-11-22 22:33:35,464 | INFO     | mean y: 3029792.955721175
[2025-11-23 00:02:43] 2025-11-22 22:33:35,464 | INFO     | intersect: -4480187100.075687
[2025-11-23 00:02:43] 2025-11-22 22:33:35,467 | INFO     | chi2: 6.628864636583455
[2025-11-23 00:02:43] 2025-11-22 22:33:35,468 | INFO     | current chi2=6.628864636583455 (change=31.31635939987828 %)
[2025-11-23 00:02:43] 2025-11-22 22:33:35,471 | INFO     | sum of square deviations: 3656063164518.5596
[2025-11-23 00:02:43] 2025-11-22 22:33:35,511 | INFO     | time since job start (139464s) is within the limit (172800.0s)
[2025-11-23 00:02:43] 2025-11-22 22:33:35,621 | INFO     | sum of deviations: 9983130989820.867
[2025-11-23 00:02:43] 2025-11-22 22:33:35,621 | INFO     | mean x: 1763780779.8330405
[2025-11-23 00:02:43] 2025-11-22 22:33:35,621 | INFO     | mean y: 3033762.036467487
[2025-11-23 00:02:43] 2025-11-22 22:33:35,622 | INFO     | intersect: -4813090514.2847595
[2025-11-23 00:02:43] 2025-11-22 22:33:35,625 | INFO     | chi2: 4.451505122454573
[2025-11-23 00:02:43] 2025-11-22 22:33:35,625 | INFO     | current chi2=4.451505122454573 (change=32.84664318098224 %)
[2025-11-23 00:02:43] 2025-11-22 22:33:35,628 | INFO     | sum of square deviations: 3632024078461.8887
[2025-11-23 00:02:43] 2025-11-22 22:33:35,778 | INFO     | sum of deviations: 10289606978807.629
[2025-11-23 00:02:43] 2025-11-22 22:33:35,778 | INFO     | mean x: 1763780627.3403788
[2025-11-23 00:02:43] 2025-11-22 22:33:35,778 | INFO     | mean y: 3035705.3355350066
[2025-11-23 00:02:43] 2025-11-22 22:33:35,778 | INFO     | intersect: -4993795003.962224
[2025-11-23 00:02:43] 2025-11-22 22:33:35,781 | INFO     | chi2: 3.8440631727323784
[2025-11-23 00:02:43] 2025-11-22 22:33:35,782 | INFO     | current chi2=3.8440631727323784 (change=13.645765488578142 %)
[2025-11-23 00:02:43] 2025-11-22 22:33:35,782 | INFO     | right removable region: 2270
[2025-11-23 00:02:43] 2025-11-22 22:33:35,785 | INFO     | sum of square deviations: 3680202374278.279
[2025-11-23 00:02:43] 2025-11-22 22:33:35,822 | INFO     | monitor loop #8249: job 0:6893877303 is in state 'finished'
[2025-11-23 00:02:43] 2025-11-22 22:33:35,823 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 00:02:43] 2025-11-22 22:33:35,936 | INFO     | sum of deviations: 7926143842580.511
[2025-11-23 00:02:43] 2025-11-22 22:33:35,936 | INFO     | mean x: 1763781237.3248575
[2025-11-23 00:02:43] 2025-11-22 22:33:35,936 | INFO     | mean y: 3028795.2678649714
[2025-11-23 00:02:43] 2025-11-22 22:33:35,936 | INFO     | intersect: -3795670942.439645
[2025-11-23 00:02:43] 2025-11-22 22:33:35,939 | INFO     | chi2: 7.4282716695893205
[2025-11-23 00:02:43] 2025-11-22 22:33:35,940 | INFO     | current chi2=7.4282716695893205 (change=23.033465064524442 %)
[2025-11-23 00:02:43] 2025-11-22 22:33:35,940 | INFO     | left removable region: 10
[2025-11-23 00:02:43] 2025-11-22 22:33:35,943 | INFO     | sum of square deviations: 3579499631311.9683
[2025-11-23 00:02:43] 2025-11-22 22:33:36,090 | INFO     | sum of deviations: 9453995986570.887
[2025-11-23 00:02:43] 2025-11-22 22:33:36,090 | INFO     | mean x: 1763780901.8588495
[2025-11-23 00:02:43] 2025-11-22 22:33:36,091 | INFO     | mean y: 3041434.6234513274
[2025-11-23 00:02:43] 2025-11-22 22:33:36,091 | INFO     | intersect: -4655368758.102915
[2025-11-23 00:02:43] 2025-11-22 22:33:36,094 | INFO     | chi2: 1.4200259445239423
[2025-11-23 00:02:43] 2025-11-22 22:33:36,094 | INFO     | current memory leak: 2.64 B/s (using 2260 data points, chi2=1.42)
[2025-11-23 00:02:43] 2025-11-22 22:33:36,097 | INFO     | could have reported an average CPU frequency of 2822 MHz (79 samples)
[2025-11-23 00:02:43] 2025-11-22 22:33:36,097 | INFO     | ..............................
[2025-11-23 00:02:43] 2025-11-22 22:33:36,097 | INFO     | . Timing measurements:
[2025-11-23 00:02:43] 2025-11-22 22:33:36,097 | INFO     | . get job = 0 s
[2025-11-23 00:02:43] 2025-11-22 22:33:36,097 | INFO     | . initial setup = 1 s
[2025-11-23 00:02:43] 2025-11-22 22:33:36,098 | INFO     | . payload setup = 9 s
[2025-11-23 00:02:43] 2025-11-22 22:33:36,098 | INFO     | . stage-in = 0 s
[2025-11-23 00:02:43] 2025-11-22 22:33:36,098 | INFO     | . payload execution = 139407 s
[2025-11-23 00:02:43] 2025-11-22 22:33:36,098 | INFO     | . stage-out = 11 s
[2025-11-23 00:02:43] 2025-11-22 22:33:36,098 | INFO     | . log creation = 4 s
[2025-11-23 00:02:43] 2025-11-22 22:33:36,098 | INFO     | ..............................
[2025-11-23 00:02:43] 2025-11-22 22:33:36,368 | INFO     | 
[2025-11-23 00:02:43] 2025-11-22 22:33:36,369 | INFO     | job summary report
[2025-11-23 00:02:43] 2025-11-22 22:33:36,369 | INFO     | --------------------------------------------------
[2025-11-23 00:02:43] 2025-11-22 22:33:36,369 | INFO     | PanDA job id: 6893877303
[2025-11-23 00:02:43] 2025-11-22 22:33:36,369 | INFO     | task id: 47523449
[2025-11-23 00:02:43] 2025-11-22 22:33:36,369 | INFO     | errors: (none)
[2025-11-23 00:02:43] 2025-11-22 22:33:36,369 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 00:02:43] 2025-11-22 22:33:36,369 | INFO     | pilot state: finished 
[2025-11-23 00:02:43] 2025-11-22 22:33:36,370 | INFO     | transexitcode: 0
[2025-11-23 00:02:43] 2025-11-22 22:33:36,370 | INFO     | exeerrorcode: 0
[2025-11-23 00:02:43] 2025-11-22 22:33:36,370 | INFO     | exeerrordiag: 
[2025-11-23 00:02:43] 2025-11-22 22:33:36,370 | INFO     | exitcode: 0
[2025-11-23 00:02:43] 2025-11-22 22:33:36,370 | INFO     | exitmsg: OK
[2025-11-23 00:02:43] 2025-11-22 22:33:36,370 | INFO     | cpuconsumptiontime: 512500 s
[2025-11-23 00:02:43] 2025-11-22 22:33:36,370 | INFO     | nevents: 1000
[2025-11-23 00:02:43] 2025-11-22 22:33:36,371 | INFO     | neventsw: 0
[2025-11-23 00:02:43] 2025-11-22 22:33:36,371 | INFO     | pid: 2612669
[2025-11-23 00:02:43] 2025-11-22 22:33:36,371 | INFO     | pgrp: 2612669
[2025-11-23 00:02:43] 2025-11-22 22:33:36,371 | INFO     | corecount: 8
[2025-11-23 00:02:43] 2025-11-22 22:33:36,371 | INFO     | event service: False
[2025-11-23 00:02:43] 2025-11-22 22:33:36,371 | INFO     | sizes: {0: 2298534, 1: 2298733, 7: 2298995, 12: 2299023, 139421: 2387349, 139434: 2396527, 139446: 2396717}
[2025-11-23 00:02:43] 2025-11-22 22:33:36,371 | INFO     | --------------------------------------------------
[2025-11-23 00:02:43] 2025-11-22 22:33:36,372 | INFO     | 
[2025-11-23 00:02:43] 2025-11-22 22:33:36,372 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-23 00:02:43] 2025-11-22 22:33:36,395 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,395 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,396 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,396 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,396 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,396 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,396 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,396 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,396 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,397 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,397 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,397 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,397 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,397 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,397 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,397 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,398 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,398 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 00:02:43] 2025-11-22 22:33:36,398 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,398 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 00:02:43] 2025-11-22 22:33:36,398 | INFO     | job 6893877303 has completed (purged errors)
[2025-11-23 00:02:43] 2025-11-22 22:33:36,398 | INFO     | overall cleanup function is called
[2025-11-23 00:02:43] 2025-11-22 22:33:37,417 | INFO     | --- collectZombieJob: --- 10, [2612669]
[2025-11-23 00:02:43] 2025-11-22 22:33:37,418 | INFO     | zombie collector waiting for pid 2612669
[2025-11-23 00:02:43] 2025-11-22 22:33:37,418 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 00:02:43] 2025-11-22 22:33:37,418 | INFO     | collected zombie processes
[2025-11-23 00:02:43] 2025-11-22 22:33:37,418 | INFO     | will attempt to kill all subprocesses of pid=2612669
[2025-11-23 00:02:43] 2025-11-22 22:33:38,191 | INFO     | process IDs to be killed: [2612669] (in reverse order)
[2025-11-23 00:02:43] 2025-11-22 22:33:38,412 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 00:02:43] 2025-11-22 22:33:38,412 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 00:02:43] 2025-11-22 22:33:38,424 | INFO     | did not find any defunct processes belonging to 2612669
[2025-11-23 00:02:43] 2025-11-22 22:33:38,434 | INFO     | did not find any defunct processes belonging to 2612669
[2025-11-23 00:02:43] 2025-11-22 22:33:38,436 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 00:02:43] 2025-11-22 22:33:38,437 | INFO     | ready for new job
[2025-11-23 00:02:43] 2025-11-22 22:33:38,437 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 00:02:43] 2025-11-22 22:33:38,446 | INFO     | ***************************************
[2025-11-23 00:02:43] 2025-11-22 22:33:38,446 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 00:02:43] 2025-11-22 22:33:38,446 | INFO     | ***************************************
[2025-11-23 00:02:43] 2025-11-22 22:33:38,446 | INFO     | 
[2025-11-23 00:02:43] 2025-11-22 22:33:38,448 | INFO     | architecture information:
[2025-11-23 00:02:43] 2025-11-22 22:33:38,449 | INFO     | executing command: cat /etc/os-release
[2025-11-23 00:02:43] 2025-11-22 22:33:38,493 | INFO     | cat /etc/os-release:
[2025-11-23 00:02:43] NAME="CentOS Linux"
[2025-11-23 00:02:43] VERSION="7 (Core)"
[2025-11-23 00:02:43] ID="centos"
[2025-11-23 00:02:43] ID_LIKE="rhel fedora"
[2025-11-23 00:02:43] VERSION_ID="7"
[2025-11-23 00:02:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 00:02:43] ANSI_COLOR="0;31"
[2025-11-23 00:02:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 00:02:43] HOME_URL="https://www.centos.org/"
[2025-11-23 00:02:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 00:02:43] 
[2025-11-23 00:02:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 00:02:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 00:02:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 00:02:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 00:02:43] 
[2025-11-23 00:02:43] 2025-11-22 22:33:38,493 | INFO     | ***************************************
[2025-11-23 00:02:43] 2025-11-22 22:33:39,007 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-23 00:02:43] 2025-11-22 22:33:39,209 | INFO     | sufficient remaining disk space (48552214528 B)
[2025-11-23 00:02:43] 2025-11-22 22:33:39,209 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 00:02:43] 2025-11-22 22:33:39,210 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 00:02:43] 2025-11-22 22:33:39,210 | INFO     | update_server=False
[2025-11-23 00:02:43] 2025-11-22 22:33:39,210 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 00:02:43] 2025-11-22 22:33:39,334 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 00:02:43] 2025-11-22 22:33:39,335 | INFO     | aborting loop
[2025-11-23 00:02:43] 2025-11-22 22:33:39,488 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 00:02:43] 2025-11-22 22:33:39,727 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 00:02:43] 2025-11-22 22:33:39,736 | INFO     | all job control threads have been joined
[2025-11-23 00:02:43] 2025-11-22 22:33:40,158 | INFO     | all data control threads have been joined
[2025-11-23 00:02:43] 2025-11-22 22:33:40,216 | INFO     | [job] retrieve thread has finished
[2025-11-23 00:02:43] 2025-11-22 22:33:40,341 | INFO     | [job] job monitor thread has finished
[2025-11-23 00:02:43] 2025-11-22 22:33:40,359 | INFO     | all payload control threads have been joined
[2025-11-23 00:02:43] 2025-11-22 22:33:40,374 | INFO     | [payload] validate_post thread has finished
[2025-11-23 00:02:43] 2025-11-22 22:33:40,562 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 00:02:43] 2025-11-22 22:33:40,742 | INFO     | [job] control thread has finished
[2025-11-23 00:02:43] 2025-11-22 22:33:41,164 | INFO     | [data] control thread has finished
[2025-11-23 00:02:43] 2025-11-22 22:33:41,273 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 00:02:43] 2025-11-22 22:33:41,290 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 00:02:43] 2025-11-22 22:33:41,301 | INFO     | [data] copytool_in thread has finished
[2025-11-23 00:02:43] 2025-11-22 22:33:41,323 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 00:02:43] 2025-11-22 22:33:41,365 | INFO     | [payload] control thread has finished
[2025-11-23 00:02:43] 2025-11-22 22:33:41,382 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 00:02:43] 2025-11-22 22:33:41,413 | INFO     | [job] validate thread has finished
[2025-11-23 00:02:43] 2025-11-22 22:33:41,495 | INFO     | [data] copytool_out thread has finished
[2025-11-23 00:02:43] 2025-11-22 22:33:41,628 | INFO     | [payload] failed_post thread has finished
[2025-11-23 00:02:43] 2025-11-22 22:33:42,388 | INFO     | [job] queue monitor thread has finished
[2025-11-23 00:02:43] 2025-11-22 22:33:43,736 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 00:02:43] 2025-11-22 22:34:09,170 | INFO     | PID=2580028 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 00:02:43] 2025-11-22 22:34:09,171 | INFO     | .. there are 9 such processes running
[2025-11-23 00:02:43] 2025-11-22 22:34:09,172 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 00:02:43] 2025-11-22 22:34:09,172 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 00:02:43] 2025-11-22 22:34:09,172 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 00:02:43] 2025-11-22 22:34:35,045 | INFO     | [monitor] cgroup control has ended
[2025-11-23 00:02:43] 2025-11-22 22:34:35,390 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139970282268480)>', '<ExcThread(monitor, started 139969360295680)>']
[2025-11-23 00:02:43] 2025-11-22 22:34:36,161 [wrapper] supervise_pilot (15 min periods counter: 156)
[2025-11-23 00:02:43] 2025-11-22 22:34:36,359 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 00:02:43] 2025-11-22 22:34:36,360 | INFO     | [monitor] control thread has ended
[2025-11-23 00:02:43] 2025-11-22 22:34:40,417 | INFO     | all workflow threads have been joined
[2025-11-23 00:02:43] 2025-11-22 22:34:40,421 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 00:02:43] 2025-11-22 22:34:40,422 | INFO     | traces error code: 0
[2025-11-23 00:02:43] 2025-11-22 22:34:40,423 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 00:02:43] 2025-11-22 22:34:40,585 [wrapper] ==== pilot stdout END ====
[2025-11-23 00:02:43] 2025-11-22 22:34:40,619 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 00:02:43] 2025-11-22 22:34:40,660 [wrapper] pilotpid: 2580028
[2025-11-23 00:02:43] 2025-11-22 22:34:40,721 [wrapper] Pilot exit status: 0
[2025-11-23 00:02:43] 2025-11-22 22:34:40,767 [wrapper] pandaids: 6893877303 6893877303
[2025-11-23 00:02:43] 2025-11-22 22:34:40,822 [wrapper] cleanup supervisor_pilot 1583082 2580033
[2025-11-23 00:02:43] 2025-11-22 22:34:40,826 [wrapper] Test setup, not cleaning
[2025-11-23 00:02:43] 2025-11-22 22:34:40,829 [wrapper] apfmon messages muted
[2025-11-23 00:02:43] 2025-11-22 22:34:40,833 [wrapper] ==== wrapper stdout END ====
[2025-11-23 00:02:43] 2025-11-22 22:34:40,836 [wrapper] ==== wrapper stderr END ====
[2025-11-23 00:02:43]  *** Error codes and diagnostics ***
[2025-11-23 00:02:43]     "exeErrorCode": 0,
[2025-11-23 00:02:43]     "exeErrorDiag": "",
[2025-11-23 00:02:43]     "pilotErrorCode": 0,
[2025-11-23 00:02:43]     "pilotErrorDiag": "",
[2025-11-23 00:02:43]  *** Listing of results directory ***
[2025-11-23 00:02:43] total 1744444
[2025-11-23 00:02:43] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-23 00:02:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 13:04 pilot3.tar.gz
[2025-11-23 00:02:43] -rwx------. 1 boincer umatlas     36292 Nov 20 13:42 runpilot2-wrapper.sh
[2025-11-23 00:02:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 13:42 queuedata.json
[2025-11-23 00:02:43] -rw-r--r--. 1 boincer umatlas       100 Nov 21 00:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 00:02:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 00:20 run_atlas
[2025-11-23 00:02:43] -rw-r--r--. 1 boincer umatlas       105 Nov 21 00:20 job.xml
[2025-11-23 00:02:43] -rw-r--r--. 3 boincer umatlas 412282425 Nov 21 00:20 EVNT.47493127._000799.pool.root.1
[2025-11-23 00:02:43] -rw-r--r--. 3 boincer umatlas 412282425 Nov 21 00:20 ATLAS.root_0
[2025-11-23 00:02:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:20 start_atlas.sh
[2025-11-23 00:02:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 00:20 shared
[2025-11-23 00:02:43] -rw-r--r--. 2 boincer umatlas    590099 Nov 21 00:20 input.tar.gz
[2025-11-23 00:02:43] -rw-r--r--. 1 boincer umatlas         0 Nov 21 00:20 boinc_lockfile
[2025-11-23 00:02:43] -rw-r--r--. 1 boincer umatlas      2784 Nov 21 02:48 pandaJob.out
[2025-11-23 00:02:43] -rw-------. 1 boincer umatlas        57 Nov 21 02:48 setup.sh.local
[2025-11-23 00:02:43] -rw-------. 1 boincer umatlas    989817 Nov 21 02:49 agis_schedconf.cvmfs.json
[2025-11-23 00:02:43] -rw-r--r--. 1 boincer umatlas       533 Nov 22 17:16 boinc_task_state.xml
[2025-11-23 00:02:43] -rw-------. 1 boincer umatlas 917078721 Nov 22 17:32 HITS.47523449._007986.pool.root.1
[2025-11-23 00:02:43] -rw-------. 1 boincer umatlas      1068 Nov 22 17:33 memory_monitor_summary.json
[2025-11-23 00:02:43] -rw-------. 1 boincer umatlas   1526164 Nov 22 17:33 agis_ddmendpoints.agis.ALL.json
[2025-11-23 00:02:43] -rw-------. 1 boincer umatlas   3028024 Nov 22 17:33 log.47523449._007986.job.log.tgz.1
[2025-11-23 00:02:43] -rw-------. 1 boincer umatlas      8645 Nov 22 17:33 heartbeat.json
[2025-11-23 00:02:43] -rw-------. 1 boincer umatlas        96 Nov 22 17:34 pilot_heartbeat.json
[2025-11-23 00:02:43] -rw-------. 1 boincer umatlas      4823 Nov 22 17:34 pilotlog.txt
[2025-11-23 00:02:43] -rw-------. 1 boincer umatlas  17342493 Nov 22 17:34 log.47523449._007986.job.log.1
[2025-11-23 00:02:43] -rw-------. 1 boincer umatlas       353 Nov 22 17:34 output.list
[2025-11-23 00:02:43] -rw-r--r--. 1 boincer umatlas       620 Nov 22 17:34 runtime_log
[2025-11-23 00:02:43] -rw-------. 1 boincer umatlas  20387840 Nov 22 17:34 result.tar.gz
[2025-11-23 00:02:43] -rw-r--r--. 1 boincer umatlas      9429 Nov 22 17:34 runtime_log.err
[2025-11-23 00:02:43] -rw-------. 1 boincer umatlas       792 Nov 22 17:34 2sbLDmxmOg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSPIKDmApgPrn.diag
[2025-11-23 00:02:43] -rw-r--r--. 1 boincer umatlas      6527 Nov 23 00:02 init_data.xml
[2025-11-23 00:02:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 00:02 boinc_mmap_file
[2025-11-23 00:02:43] -rw-r--r--. 1 boincer umatlas        29 Nov 23 00:02 wrapper_checkpoint.txt
[2025-11-23 00:02:43] -rw-r--r--. 1 boincer umatlas     23482 Nov 23 00:02 stderr.txt
[2025-11-23 00:02:43] HITS file was successfully produced:
[2025-11-23 00:02:43] -rw-------. 1 boincer umatlas 917078721 Nov 22 17:32 shared/HITS.pool.root.1
[2025-11-23 00:02:43]  *** Contents of shared directory: ***
[2025-11-23 00:02:43] total 1318720
[2025-11-23 00:02:43] -rw-r--r--. 3 boincer umatlas 412282425 Nov 21 00:20 ATLAS.root_0
[2025-11-23 00:02:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:20 start_atlas.sh
[2025-11-23 00:02:43] -rw-r--r--. 2 boincer umatlas    590099 Nov 21 00:20 input.tar.gz
[2025-11-23 00:02:43] -rw-------. 1 boincer umatlas 917078721 Nov 22 17:32 HITS.pool.root.1
[2025-11-23 00:02:43] -rw-------. 1 boincer umatlas  20387840 Nov 22 17:34 result.tar.gz
00:02:45 (2560055): run_atlas exited; CPU time 515982.431775
00:02:45 (2560055): called boinc_finish(0)

</stderr_txt>
]]>

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