Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:09:25 (25144): wrapper (7.7.26015): starting
03:09:25 (25144): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:09:25] Arguments: --nthreads 8
[2025-11-24 03:09:25] Threads: 8
[2025-11-24 03:09:25] Checking for CVMFS
[2025-11-24 03:09:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:09:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:09:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:09:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:09:27] 2.11.2.0 20802 82039 126000 153228 1 85 17747124 25165825 4632 130560 7 25177890 99.863 14756183 2035 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 03:09:27] CVMFS is ok
[2025-11-24 03:09:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:09:27] Checking for apptainer binary...
[2025-11-24 03:09:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:09:27] Running /usr/bin/apptainer --version
[2025-11-24 03:09:27] apptainer version 1.3.2-1.el7
[2025-11-24 03:09:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:09:48] cg-vwn369.simple-grid.lan
[2025-11-24 03:09:48] apptainer works
[2025-11-24 03:09:48] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:09:48] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:09:49] Starting ATLAS job with PandaID=6893848399
[2025-11-24 03:09:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 00:12:06]  *** The last 200 lines of the pilot log: ***
[2025-11-25 00:12:07] 2025-11-24 23:10:42,109 | INFO     | time since job start (75539s) is within the limit (172800.0s)
[2025-11-25 00:12:07] 2025-11-24 23:10:43,251 | INFO     | PID=28980 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 00:12:07] 2025-11-24 23:10:43,252 | INFO     | .. there are 2 such processes running
[2025-11-25 00:12:07] 2025-11-24 23:10:43,574 | INFO     | monitor loop #5022: job 0:6893848399 is in state 'finished'
[2025-11-25 00:12:07] 2025-11-24 23:10:43,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:12:07] 2025-11-24 23:10:44,253 | INFO     | time since job start (75541s) is within the limit (172800.0s)
[2025-11-25 00:12:07] 2025-11-24 23:10:46,078 | INFO     | monitor loop #5023: job 0:6893848399 is in state 'finished'
[2025-11-25 00:12:07] 2025-11-24 23:10:46,078 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:12:07] 2025-11-24 23:10:46,267 | INFO     | time since job start (75543s) is within the limit (172800.0s)
[2025-11-25 00:12:07] 2025-11-24 23:10:48,284 | INFO     | time since job start (75545s) is within the limit (172800.0s)
[2025-11-25 00:12:07] 2025-11-24 23:10:48,592 | INFO     | monitor loop #5024: job 0:6893848399 is in state 'finished'
[2025-11-25 00:12:07] 2025-11-24 23:10:48,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:12:07] 2025-11-24 23:10:50,292 | INFO     | time since job start (75547s) is within the limit (172800.0s)
[2025-11-25 00:12:07] 2025-11-24 23:10:51,097 | INFO     | monitor loop #5025: job 0:6893848399 is in state 'finished'
[2025-11-25 00:12:07] 2025-11-24 23:10:51,097 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:12:07] 2025-11-24 23:10:52,301 | INFO     | time since job start (75549s) is within the limit (172800.0s)
[2025-11-25 00:12:07] 2025-11-24 23:10:52,647 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 00:12:07] 2025-11-24 23:10:52,649 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 00:12:07] 2025-11-24 23:10:52,651 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6893848399/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 00:12:07] 2025-11-24 23:10:52,651 | INFO     | extracted standard info from prmon json
[2025-11-25 00:12:07] 2025-11-24 23:10:52,651 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 00:12:07] 2025-11-24 23:10:52,652 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 00:12:07] 2025-11-24 23:10:52,678 | INFO     | fitting pss+swap vs Time
[2025-11-25 00:12:07] 2025-11-24 23:10:52,680 | INFO     | sum of square deviations: 585508117042.3007
[2025-11-25 00:12:07] 2025-11-24 23:10:52,746 | INFO     | sum of deviations: 1365772397230.8901
[2025-11-25 00:12:07] 2025-11-24 23:10:52,747 | INFO     | mean x: 1763988035.5736246
[2025-11-25 00:12:07] 2025-11-24 23:10:52,747 | INFO     | mean y: 2839676.3584142393
[2025-11-25 00:12:07] 2025-11-24 23:10:52,747 | INFO     | intersect: -4111887511.7156367
[2025-11-25 00:12:07] 2025-11-24 23:10:52,749 | INFO     | chi2: 20.730790888104554
[2025-11-25 00:12:07] 2025-11-24 23:10:52,750 | INFO     | sum of square deviations: 578431533266.5138
[2025-11-25 00:12:07] 2025-11-24 23:10:52,796 | INFO     | sum of deviations: 1765973335229.7114
[2025-11-25 00:12:07] 2025-11-24 23:10:52,797 | INFO     | mean x: 1763987883.0779853
[2025-11-25 00:12:07] 2025-11-24 23:10:52,797 | INFO     | mean y: 2848299.0446791225
[2025-11-25 00:12:07] 2025-11-24 23:10:52,797 | INFO     | intersect: -5382673385.072622
[2025-11-25 00:12:07] 2025-11-24 23:10:52,798 | INFO     | chi2: 17.48301095798198
[2025-11-25 00:12:07] 2025-11-24 23:10:52,799 | INFO     | current chi2=17.48301095798198 (change=15.666454539301588 %)
[2025-11-25 00:12:07] 2025-11-24 23:10:52,799 | INFO     | right removable region: 1230
[2025-11-25 00:12:07] 2025-11-24 23:10:52,801 | INFO     | sum of square deviations: 578430723796.5135
[2025-11-25 00:12:07] 2025-11-24 23:10:52,860 | INFO     | sum of deviations: 974506733554.1991
[2025-11-25 00:12:07] 2025-11-24 23:10:52,860 | INFO     | mean x: 1763988188.0779853
[2025-11-25 00:12:07] 2025-11-24 23:10:52,860 | INFO     | mean y: 2848103.6125101545
[2025-11-25 00:12:07] 2025-11-24 23:10:52,860 | INFO     | intersect: -2969017491.474382
[2025-11-25 00:12:07] 2025-11-24 23:10:52,862 | INFO     | chi2: 18.129502164245952
[2025-11-25 00:12:07] 2025-11-24 23:10:52,862 | INFO     | current chi2=18.129502164245952 (change=12.54794734025915 %)
[2025-11-25 00:12:07] 2025-11-24 23:10:52,862 | INFO     | left removable region: 10
[2025-11-25 00:12:07] 2025-11-24 23:10:52,864 | INFO     | sum of square deviations: 563063169402.8036
[2025-11-25 00:12:07] 2025-11-24 23:10:52,909 | INFO     | sum of deviations: 1318916497780.7583
[2025-11-25 00:12:07] 2025-11-24 23:10:52,909 | INFO     | mean x: 1763988157.581967
[2025-11-25 00:12:07] 2025-11-24 23:10:52,909 | INFO     | mean y: 2861860.4073770493
[2025-11-25 00:12:07] 2025-11-24 23:10:52,909 | INFO     | intersect: -4129095634.508034
[2025-11-25 00:12:07] 2025-11-24 23:10:52,911 | INFO     | chi2: 13.800157011090956
[2025-11-25 00:12:07] 2025-11-24 23:10:52,911 | INFO     | current memory leak: 2.34 B/s (using 1220 data points, chi2=13.80)
[2025-11-25 00:12:07] 2025-11-24 23:10:52,913 | INFO     | could have reported an average CPU frequency of 1999 MHz (41 samples)
[2025-11-25 00:12:07] 2025-11-24 23:10:52,914 | INFO     | ..............................
[2025-11-25 00:12:07] 2025-11-24 23:10:52,914 | INFO     | . Timing measurements:
[2025-11-25 00:12:07] 2025-11-24 23:10:52,914 | INFO     | . get job = 0 s
[2025-11-25 00:12:07] 2025-11-24 23:10:52,914 | INFO     | . initial setup = 2 s
[2025-11-25 00:12:07] 2025-11-24 23:10:52,914 | INFO     | . payload setup = 13 s
[2025-11-25 00:12:07] 2025-11-24 23:10:52,914 | INFO     | . stage-in = 0 s
[2025-11-25 00:12:07] 2025-11-24 23:10:52,914 | INFO     | . payload execution = 75387 s
[2025-11-25 00:12:07] 2025-11-24 23:10:52,914 | INFO     | . stage-out = 5 s
[2025-11-25 00:12:07] 2025-11-24 23:10:52,914 | INFO     | . log creation = 1 s
[2025-11-25 00:12:07] 2025-11-24 23:10:52,914 | INFO     | ..............................
[2025-11-25 00:12:07] 2025-11-24 23:10:53,042 | INFO     | 
[2025-11-25 00:12:07] 2025-11-24 23:10:53,042 | INFO     | job summary report
[2025-11-25 00:12:07] 2025-11-24 23:10:53,042 | INFO     | --------------------------------------------------
[2025-11-25 00:12:07] 2025-11-24 23:10:53,042 | INFO     | PanDA job id: 6893848399
[2025-11-25 00:12:07] 2025-11-24 23:10:53,043 | INFO     | task id: 47523449
[2025-11-25 00:12:07] 2025-11-24 23:10:53,043 | INFO     | errors: (none)
[2025-11-25 00:12:07] 2025-11-24 23:10:53,043 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 00:12:07] 2025-11-24 23:10:53,043 | INFO     | pilot state: finished 
[2025-11-25 00:12:07] 2025-11-24 23:10:53,043 | INFO     | transexitcode: 0
[2025-11-25 00:12:07] 2025-11-24 23:10:53,043 | INFO     | exeerrorcode: 0
[2025-11-25 00:12:07] 2025-11-24 23:10:53,043 | INFO     | exeerrordiag: 
[2025-11-25 00:12:07] 2025-11-24 23:10:53,043 | INFO     | exitcode: 0
[2025-11-25 00:12:07] 2025-11-24 23:10:53,043 | INFO     | exitmsg: OK
[2025-11-25 00:12:07] 2025-11-24 23:10:53,044 | INFO     | cpuconsumptiontime: 332400 s
[2025-11-25 00:12:07] 2025-11-24 23:10:53,044 | INFO     | nevents: 1000
[2025-11-25 00:12:07] 2025-11-24 23:10:53,044 | INFO     | neventsw: 0
[2025-11-25 00:12:07] 2025-11-24 23:10:53,044 | INFO     | pid: 3114
[2025-11-25 00:12:07] 2025-11-24 23:10:53,044 | INFO     | pgrp: 3114
[2025-11-25 00:12:07] 2025-11-24 23:10:53,044 | INFO     | corecount: 8
[2025-11-25 00:12:07] 2025-11-24 23:10:53,044 | INFO     | event service: False
[2025-11-25 00:12:07] 2025-11-24 23:10:53,044 | INFO     | sizes: {0: 2298636, 1: 2298835, 11: 2299097, 12: 2299125, 75405: 2355740, 75410: 2365525, 75414: 2365709, 75527: 2366051}
[2025-11-25 00:12:07] 2025-11-24 23:10:53,044 | INFO     | --------------------------------------------------
[2025-11-25 00:12:07] 2025-11-24 23:10:53,045 | INFO     | 
[2025-11-25 00:12:07] 2025-11-24 23:10:53,045 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-25 00:12:07] 2025-11-24 23:10:53,449 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,450 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,450 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,450 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,450 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,450 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,450 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,450 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,450 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,451 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,451 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,451 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,451 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,451 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,451 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,451 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,451 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,451 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 00:12:07] 2025-11-24 23:10:53,451 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,452 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 00:12:07] 2025-11-24 23:10:53,452 | INFO     | job 6893848399 has completed (purged errors)
[2025-11-25 00:12:07] 2025-11-24 23:10:53,452 | INFO     | overall cleanup function is called
[2025-11-25 00:12:07] 2025-11-24 23:10:54,474 | INFO     | --- collectZombieJob: --- 10, [3114]
[2025-11-25 00:12:07] 2025-11-24 23:10:54,474 | INFO     | zombie collector waiting for pid 3114
[2025-11-25 00:12:07] 2025-11-24 23:10:54,474 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 00:12:07] 2025-11-24 23:10:54,474 | INFO     | collected zombie processes
[2025-11-25 00:12:07] 2025-11-24 23:10:54,474 | INFO     | will attempt to kill all subprocesses of pid=3114
[2025-11-25 00:12:07] 2025-11-24 23:10:54,561 | INFO     | process IDs to be killed: [3114] (in reverse order)
[2025-11-25 00:12:07] 2025-11-24 23:10:55,567 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 00:12:07] 2025-11-24 23:10:55,568 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 00:12:07] 2025-11-24 23:10:55,570 | INFO     | did not find any defunct processes belonging to 3114
[2025-11-25 00:12:07] 2025-11-24 23:10:55,571 | INFO     | did not find any defunct processes belonging to 3114
[2025-11-25 00:12:07] 2025-11-24 23:10:55,620 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 00:12:07] 2025-11-24 23:10:55,620 | INFO     | ready for new job
[2025-11-25 00:12:07] 2025-11-24 23:10:55,620 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 00:12:07] 2025-11-24 23:10:55,625 | INFO     | ***************************************
[2025-11-25 00:12:07] 2025-11-24 23:10:55,625 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 00:12:07] 2025-11-24 23:10:55,626 | INFO     | ***************************************
[2025-11-25 00:12:07] 2025-11-24 23:10:55,626 | INFO     | 
[2025-11-25 00:12:07] 2025-11-24 23:10:55,626 | INFO     | pilot is running in a VM
[2025-11-25 00:12:07] 2025-11-24 23:10:55,626 | INFO     | architecture information:
[2025-11-25 00:12:07] 2025-11-24 23:10:55,637 | INFO     | executing command: cat /etc/os-release
[2025-11-25 00:12:07] 2025-11-24 23:10:55,940 | INFO     | cat /etc/os-release:
[2025-11-25 00:12:07] NAME="CentOS Linux"
[2025-11-25 00:12:07] VERSION="7 (Core)"
[2025-11-25 00:12:07] ID="centos"
[2025-11-25 00:12:07] ID_LIKE="rhel fedora"
[2025-11-25 00:12:07] VERSION_ID="7"
[2025-11-25 00:12:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 00:12:07] ANSI_COLOR="0;31"
[2025-11-25 00:12:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 00:12:07] HOME_URL="https://www.centos.org/"
[2025-11-25 00:12:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 00:12:07] 
[2025-11-25 00:12:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 00:12:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 00:12:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 00:12:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 00:12:07] 
[2025-11-25 00:12:07] 2025-11-24 23:10:55,940 | INFO     | ***************************************
[2025-11-25 00:12:07] 2025-11-24 23:10:56,444 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-25 00:12:07] 2025-11-24 23:10:56,739 | INFO     | sufficient remaining disk space (492500418560 B)
[2025-11-25 00:12:07] 2025-11-24 23:10:56,740 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 00:12:07] 2025-11-24 23:10:56,740 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 00:12:07] 2025-11-24 23:10:56,740 | INFO     | update_server=False
[2025-11-25 00:12:07] 2025-11-24 23:10:56,740 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 00:12:07] 2025-11-24 23:10:57,062 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 00:12:07] 2025-11-24 23:10:57,123 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:12:07] 2025-11-24 23:10:57,123 | INFO     | aborting loop
[2025-11-25 00:12:07] 2025-11-24 23:10:57,187 | INFO     | all data control threads have been joined
[2025-11-25 00:12:07] 2025-11-24 23:10:57,299 | INFO     | all job control threads have been joined
[2025-11-25 00:12:07] 2025-11-24 23:10:57,317 | INFO     | all payload control threads have been joined
[2025-11-25 00:12:07] 2025-11-24 23:10:57,747 | INFO     | [job] retrieve thread has finished
[2025-11-25 00:12:07] 2025-11-24 23:10:58,057 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:12:07] 2025-11-24 23:10:58,101 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 00:12:07] 2025-11-24 23:10:58,127 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 00:12:07] 2025-11-24 23:10:58,129 | INFO     | [job] job monitor thread has finished
[2025-11-25 00:12:07] 2025-11-24 23:10:58,193 | INFO     | [data] control thread has finished
[2025-11-25 00:12:07] 2025-11-24 23:10:58,306 | INFO     | [job] control thread has finished
[2025-11-25 00:12:07] 2025-11-24 23:10:58,323 | INFO     | [payload] control thread has finished
[2025-11-25 00:12:07] 2025-11-24 23:10:58,418 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 00:12:07] 2025-11-24 23:10:58,791 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 00:12:07] 2025-11-24 23:10:58,801 | INFO     | [payload] failed_post thread has finished
[2025-11-25 00:12:07] 2025-11-24 23:10:58,826 | INFO     | [job] validate thread has finished
[2025-11-25 00:12:07] 2025-11-24 23:10:58,875 | INFO     | [data] copytool_in thread has finished
[2025-11-25 00:12:07] 2025-11-24 23:10:58,912 | INFO     | [payload] validate_post thread has finished
[2025-11-25 00:12:07] 2025-11-24 23:10:59,063 | INFO     | [job] queue monitor thread has finished
[2025-11-25 00:12:07] 2025-11-24 23:10:59,068 | INFO     | [data] copytool_out thread has finished
[2025-11-25 00:12:07] 2025-11-24 23:10:59,122 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 00:12:07] 2025-11-24 23:11:02,427 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 00:12:07] 2025-11-24 23:11:25,447 | INFO     | PID=28980 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 00:12:07] 2025-11-24 23:11:25,447 | INFO     | .. there are 2 such processes running
[2025-11-25 00:12:07] 2025-11-24 23:11:25,448 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 00:12:07] 2025-11-24 23:11:25,448 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 00:12:07] 2025-11-24 23:11:25,448 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 00:12:07] 2025-11-24 23:11:54,838 | INFO     | [monitor] cgroup control has ended
[2025-11-25 00:12:07] 2025-11-24 23:11:55,738 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140230917293888)>', '<ExcThread(monitor, started 140230346667776)>']
[2025-11-25 00:12:07] 2025-11-24 23:11:56,633 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 00:12:07] 2025-11-24 23:11:56,634 | INFO     | [monitor] control thread has ended
[2025-11-25 00:12:07] 2025-11-24 23:12:00,764 | INFO     | all workflow threads have been joined
[2025-11-25 00:12:07] 2025-11-24 23:12:00,764 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 00:12:07] 2025-11-24 23:12:00,764 | INFO     | traces error code: 0
[2025-11-25 00:12:07] 2025-11-24 23:12:00,764 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 00:12:07] 2025-11-24 23:12:01,303 [wrapper] ==== pilot stdout END ====
[2025-11-25 00:12:07] 2025-11-24 23:12:01,382 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 00:12:07] 2025-11-24 23:12:01,512 [wrapper] pilotpid: 28980
[2025-11-25 00:12:07] 2025-11-24 23:12:01,608 [wrapper] Pilot exit status: 0
[2025-11-25 00:12:07] 2025-11-24 23:12:02,044 [wrapper] pandaids: 6893848399
[2025-11-25 00:12:07] 2025-11-24 23:12:02,934 [wrapper] cleanup supervisor_pilot  3052 28981
[2025-11-25 00:12:07] 2025-11-24 23:12:02,992 [wrapper] Test setup, not cleaning
[2025-11-25 00:12:07] 2025-11-24 23:12:03,051 [wrapper] apfmon messages muted
[2025-11-25 00:12:07] 2025-11-24 23:12:03,197 [wrapper] ==== wrapper stdout END ====
[2025-11-25 00:12:07] 2025-11-24 23:12:03,330 [wrapper] ==== wrapper stderr END ====
[2025-11-25 00:12:07]  *** Error codes and diagnostics ***
[2025-11-25 00:12:07]     "exeErrorCode": 0,
[2025-11-25 00:12:07]     "exeErrorDiag": "",
[2025-11-25 00:12:07]     "pilotErrorCode": 0,
[2025-11-25 00:12:07]     "pilotErrorDiag": "",
[2025-11-25 00:12:07]  *** Listing of results directory ***
[2025-11-25 00:12:07] total 1329204
[2025-11-25 00:12:07] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-25 00:12:07] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:36 queuedata.json
[2025-11-25 00:12:07] -rwx------. 1 boinc boinc     36292 Nov 20 11:36 runpilot2-wrapper.sh
[2025-11-25 00:12:07] -rw-r--r--. 1 boinc boinc       100 Nov 24 03:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 00:12:07] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 03:09 run_atlas
[2025-11-25 00:12:07] -rw-r--r--. 1 boinc boinc       105 Nov 24 03:09 job.xml
[2025-11-25 00:12:07] -rw-r--r--. 1 boinc boinc      6391 Nov 24 03:09 init_data.xml
[2025-11-25 00:12:07] -rw-r--r--. 2 boinc boinc 410122635 Nov 24 03:09 EVNT.47493127._000268.pool.root.1
[2025-11-25 00:12:07] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:09 start_atlas.sh
[2025-11-25 00:12:07] drwxrwx--x. 2 boinc boinc        68 Nov 24 03:09 shared
[2025-11-25 00:12:07] -rw-r--r--. 2 boinc boinc    590102 Nov 24 03:09 input.tar.gz
[2025-11-25 00:12:07] -rw-r--r--. 1 boinc boinc         0 Nov 24 03:09 boinc_lockfile
[2025-11-25 00:12:07] -rw-r--r--. 1 boinc boinc      2786 Nov 24 03:09 pandaJob.out
[2025-11-25 00:12:07] -rw-------. 1 boinc boinc    989786 Nov 24 03:11 agis_schedconf.cvmfs.json
[2025-11-25 00:12:07] drwx------. 5 boinc boinc      4096 Nov 24 03:11 pilot3
[2025-11-25 00:12:07] -rw-r--r--. 1 boinc boinc       533 Nov 24 23:38 boinc_task_state.xml
[2025-11-25 00:12:07] -rw-------. 1 boinc boinc 922278749 Nov 25 00:07 HITS.47523449._002678.pool.root.1
[2025-11-25 00:12:07] -rw-------. 1 boinc boinc      1030 Nov 25 00:08 memory_monitor_summary.json
[2025-11-25 00:12:07] -rw-------. 1 boinc boinc   1516227 Nov 25 00:08 agis_ddmendpoints.agis.ALL.json
[2025-11-25 00:12:07] -rw-------. 1 boinc boinc   2358252 Nov 25 00:08 log.47523449._002678.job.log.tgz.1
[2025-11-25 00:12:07] -rw-------. 1 boinc boinc      8627 Nov 25 00:10 heartbeat.json
[2025-11-25 00:12:07] -rw-------. 1 boinc boinc        95 Nov 25 00:11 pilot_heartbeat.json
[2025-11-25 00:12:07] -rw-r--r--. 1 boinc boinc      8192 Nov 25 00:11 boinc_mmap_file
[2025-11-25 00:12:07] -rw-r--r--. 1 boinc boinc        29 Nov 25 00:11 wrapper_checkpoint.txt
[2025-11-25 00:12:07] -rw-------. 1 boinc boinc      4884 Nov 25 00:12 pilotlog.txt
[2025-11-25 00:12:07] -rw-------. 1 boinc boinc  10045189 Nov 25 00:12 log.47523449._002678.job.log.1
[2025-11-25 00:12:07] -rw-------. 1 boinc boinc       353 Nov 25 00:12 output.list
[2025-11-25 00:12:07] -rw-r--r--. 1 boinc boinc       620 Nov 25 00:12 runtime_log
[2025-11-25 00:12:07] -rw-------. 1 boinc boinc  12421120 Nov 25 00:12 result.tar.gz
[2025-11-25 00:12:07] -rw-r--r--. 1 boinc boinc      8817 Nov 25 00:12 runtime_log.err
[2025-11-25 00:12:07] -rw-------. 1 boinc boinc       661 Nov 25 00:12 3mQNDmmCHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7VHKDm2MhI6m.diag
[2025-11-25 00:12:07] -rw-r--r--. 1 boinc boinc     21394 Nov 25 00:12 stderr.txt
[2025-11-25 00:12:07] HITS file was successfully produced:
[2025-11-25 00:12:07] -rw-------. 1 boinc boinc 922278749 Nov 25 00:07 shared/HITS.pool.root.1
[2025-11-25 00:12:07]  *** Contents of shared directory: ***
[2025-11-25 00:12:07] total 1313904
[2025-11-25 00:12:07] -rw-r--r--. 2 boinc boinc 410122635 Nov 24 03:09 ATLAS.root_0
[2025-11-25 00:12:07] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:09 start_atlas.sh
[2025-11-25 00:12:07] -rw-r--r--. 2 boinc boinc    590102 Nov 24 03:09 input.tar.gz
[2025-11-25 00:12:07] -rw-------. 1 boinc boinc 922278749 Nov 25 00:07 HITS.pool.root.1
[2025-11-25 00:12:07] -rw-------. 1 boinc boinc  12421120 Nov 25 00:12 result.tar.gz
00:12:09 (25144): run_atlas exited; CPU time 332602.646303
00:12:09 (25144): called boinc_finish(0)

</stderr_txt>
]]>

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