Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:12:19 (29077): wrapper (7.7.26015): starting
03:12:19 (29077): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:12:19] Arguments: --nthreads 8
[2025-11-24 03:12:19] Threads: 8
[2025-11-24 03:12:19] Checking for CVMFS
[2025-11-24 03:12:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:12:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:12:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:12:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:12:21] 2.11.2.0 14280 281712 143472 153228 0 236 12985073 25165825 4536 130560 2 150481408 99.892 79087065 3065 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 03:12:21] CVMFS is ok
[2025-11-24 03:12:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:12:21] Checking for apptainer binary...
[2025-11-24 03:12:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:12:21] Running /usr/bin/apptainer --version
[2025-11-24 03:12:21] apptainer version 1.3.2-1.el7
[2025-11-24 03:12:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:12:29] cg-vwn302.simple-grid.lan
[2025-11-24 03:12:29] apptainer works
[2025-11-24 03:12:29] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:12:29] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:12:29] Starting ATLAS job with PandaID=6893848603
[2025-11-24 03:12:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:20:51]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:20:51] 2025-11-25 00:20:03,534 | INFO     | time since job start (79427s) is within the limit (172800.0s)
[2025-11-25 01:20:51] 2025-11-25 00:20:04,068 | INFO     | monitor loop #5301: job 0:6893848603 is in state 'finished'
[2025-11-25 01:20:51] 2025-11-25 00:20:04,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:20:51] 2025-11-25 00:20:05,542 | INFO     | time since job start (79429s) is within the limit (172800.0s)
[2025-11-25 01:20:51] 2025-11-25 00:20:06,582 | INFO     | monitor loop #5302: job 0:6893848603 is in state 'finished'
[2025-11-25 01:20:51] 2025-11-25 00:20:06,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:20:51] 2025-11-25 00:20:06,784 | INFO     | PID=426 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-11-25 01:20:51] 2025-11-25 00:20:06,784 | INFO     | .. there are 9 such processes running
[2025-11-25 01:20:51] 2025-11-25 00:20:07,787 | INFO     | time since job start (79431s) is within the limit (172800.0s)
[2025-11-25 01:20:51] 2025-11-25 00:20:09,087 | INFO     | monitor loop #5303: job 0:6893848603 is in state 'finished'
[2025-11-25 01:20:51] 2025-11-25 00:20:09,088 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:20:51] 2025-11-25 00:20:09,794 | INFO     | time since job start (79433s) is within the limit (172800.0s)
[2025-11-25 01:20:51] 2025-11-25 00:20:11,595 | INFO     | monitor loop #5304: job 0:6893848603 is in state 'finished'
[2025-11-25 01:20:51] 2025-11-25 00:20:11,596 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:20:51] 2025-11-25 00:20:11,801 | INFO     | time since job start (79435s) is within the limit (172800.0s)
[2025-11-25 01:20:51] 2025-11-25 00:20:13,337 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 01:20:51] 2025-11-25 00:20:13,338 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-25 01:20:51] 2025-11-25 00:20:13,340 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6893848603/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 01:20:51] 2025-11-25 00:20:13,341 | INFO     | extracted standard info from prmon json
[2025-11-25 01:20:51] 2025-11-25 00:20:13,341 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 01:20:51] 2025-11-25 00:20:13,341 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 01:20:51] 2025-11-25 00:20:13,367 | INFO     | fitting pss+swap vs Time
[2025-11-25 01:20:51] 2025-11-25 00:20:13,369 | INFO     | sum of square deviations: 674983388321.2216
[2025-11-25 01:20:51] 2025-11-25 00:20:13,431 | INFO     | sum of deviations: 1253041960566.7874
[2025-11-25 01:20:51] 2025-11-25 00:20:13,432 | INFO     | mean x: 1763990381.5462964
[2025-11-25 01:20:51] 2025-11-25 00:20:13,432 | INFO     | mean y: 2852404.4452160494
[2025-11-25 01:20:51] 2025-11-25 00:20:13,432 | INFO     | intersect: -3271826653.377506
[2025-11-25 01:20:51] 2025-11-25 00:20:13,434 | INFO     | chi2: 20.52252681764746
[2025-11-25 01:20:51] 2025-11-25 00:20:13,436 | INFO     | sum of square deviations: 667201590865.7272
[2025-11-25 01:20:51] 2025-11-25 00:20:13,492 | INFO     | sum of deviations: 1688262957318.8845
[2025-11-25 01:20:51] 2025-11-25 00:20:13,493 | INFO     | mean x: 1763990229.0503485
[2025-11-25 01:20:51] 2025-11-25 00:20:13,493 | INFO     | mean y: 2860931.8017041055
[2025-11-25 01:20:51] 2025-11-25 00:20:13,493 | INFO     | intersect: -4460676627.984315
[2025-11-25 01:20:51] 2025-11-25 00:20:13,494 | INFO     | chi2: 17.108059885098
[2025-11-25 01:20:51] 2025-11-25 00:20:13,495 | INFO     | current chi2=17.108059885098 (change=16.6376536519535 %)
[2025-11-25 01:20:51] 2025-11-25 00:20:13,495 | INFO     | right removable region: 1290
[2025-11-25 01:20:51] 2025-11-25 00:20:13,497 | INFO     | sum of square deviations: 667200763705.7277
[2025-11-25 01:20:51] 2025-11-25 00:20:13,549 | INFO     | sum of deviations: 863505611361.952
[2025-11-25 01:20:51] 2025-11-25 00:20:13,550 | INFO     | mean x: 1763990534.0503485
[2025-11-25 01:20:51] 2025-11-25 00:20:13,550 | INFO     | mean y: 2860033.6622773046
[2025-11-25 01:20:51] 2025-11-25 00:20:13,550 | INFO     | intersect: -2280134542.1857576
[2025-11-25 01:20:51] 2025-11-25 00:20:13,551 | INFO     | chi2: 18.16074223938421
[2025-11-25 01:20:51] 2025-11-25 00:20:13,552 | INFO     | current chi2=18.16074223938421 (change=11.508254316092968 %)
[2025-11-25 01:20:51] 2025-11-25 00:20:13,552 | INFO     | left removable region: 10
[2025-11-25 01:20:51] 2025-11-25 00:20:13,554 | INFO     | sum of square deviations: 650291649584.3867
[2025-11-25 01:20:51] 2025-11-25 00:20:13,599 | INFO     | sum of deviations: 1301836496619.942
[2025-11-25 01:20:51] 2025-11-25 00:20:13,599 | INFO     | mean x: 1763990503.553125
[2025-11-25 01:20:51] 2025-11-25 00:20:13,599 | INFO     | mean y: 2872278.30234375
[2025-11-25 01:20:51] 2025-11-25 00:20:13,599 | INFO     | intersect: -3528508170.2765913
[2025-11-25 01:20:51] 2025-11-25 00:20:13,601 | INFO     | chi2: 13.893297118839284
[2025-11-25 01:20:51] 2025-11-25 00:20:13,601 | INFO     | current memory leak: 2.00 B/s (using 1280 data points, chi2=13.89)
[2025-11-25 01:20:51] 2025-11-25 00:20:13,603 | INFO     | could have reported an average CPU frequency of 1999 MHz (44 samples)
[2025-11-25 01:20:51] 2025-11-25 00:20:13,604 | INFO     | ..............................
[2025-11-25 01:20:51] 2025-11-25 00:20:13,604 | INFO     | . Timing measurements:
[2025-11-25 01:20:51] 2025-11-25 00:20:13,604 | INFO     | . get job = 0 s
[2025-11-25 01:20:51] 2025-11-25 00:20:13,604 | INFO     | . initial setup = 9 s
[2025-11-25 01:20:51] 2025-11-25 00:20:13,604 | INFO     | . payload setup = 84 s
[2025-11-25 01:20:51] 2025-11-25 00:20:13,604 | INFO     | . stage-in = 0 s
[2025-11-25 01:20:51] 2025-11-25 00:20:13,604 | INFO     | . payload execution = 79053 s
[2025-11-25 01:20:51] 2025-11-25 00:20:13,604 | INFO     | . stage-out = 5 s
[2025-11-25 01:20:51] 2025-11-25 00:20:13,604 | INFO     | . log creation = 2 s
[2025-11-25 01:20:51] 2025-11-25 00:20:13,604 | INFO     | ..............................
[2025-11-25 01:20:51] 2025-11-25 00:20:13,808 | INFO     | time since job start (79437s) is within the limit (172800.0s)
[2025-11-25 01:20:51] 2025-11-25 00:20:13,976 | INFO     | 
[2025-11-25 01:20:51] 2025-11-25 00:20:13,977 | INFO     | job summary report
[2025-11-25 01:20:51] 2025-11-25 00:20:13,977 | INFO     | --------------------------------------------------
[2025-11-25 01:20:51] 2025-11-25 00:20:13,977 | INFO     | PanDA job id: 6893848603
[2025-11-25 01:20:51] 2025-11-25 00:20:13,977 | INFO     | task id: 47523449
[2025-11-25 01:20:51] 2025-11-25 00:20:13,977 | INFO     | errors: (none)
[2025-11-25 01:20:51] 2025-11-25 00:20:13,977 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 01:20:51] 2025-11-25 00:20:13,977 | INFO     | pilot state: finished 
[2025-11-25 01:20:51] 2025-11-25 00:20:13,977 | INFO     | transexitcode: 0
[2025-11-25 01:20:51] 2025-11-25 00:20:13,977 | INFO     | exeerrorcode: 0
[2025-11-25 01:20:51] 2025-11-25 00:20:13,978 | INFO     | exeerrordiag: 
[2025-11-25 01:20:51] 2025-11-25 00:20:13,978 | INFO     | exitcode: 0
[2025-11-25 01:20:51] 2025-11-25 00:20:13,978 | INFO     | exitmsg: OK
[2025-11-25 01:20:51] 2025-11-25 00:20:13,978 | INFO     | cpuconsumptiontime: 349523 s
[2025-11-25 01:20:51] 2025-11-25 00:20:13,978 | INFO     | nevents: 1000
[2025-11-25 01:20:51] 2025-11-25 00:20:13,978 | INFO     | neventsw: 0
[2025-11-25 01:20:51] 2025-11-25 00:20:13,978 | INFO     | pid: 7061
[2025-11-25 01:20:51] 2025-11-25 00:20:13,978 | INFO     | pgrp: 7061
[2025-11-25 01:20:51] 2025-11-25 00:20:13,978 | INFO     | corecount: 8
[2025-11-25 01:20:51] 2025-11-25 00:20:13,978 | INFO     | event service: False
[2025-11-25 01:20:51] 2025-11-25 00:20:13,979 | INFO     | sizes: {0: 2298636, 1: 2298835, 12: 2298835, 23: 2298863, 34: 2298891, 44: 2298919, 55: 2299075, 66: 2299103, 77: 2299131, 87: 2299187, 98: 2299215, 104: 2299785, 
[2025-11-25 01:20:51] 2025-11-25 00:20:13,979 | INFO     | --------------------------------------------------
[2025-11-25 01:20:51] 2025-11-25 00:20:13,979 | INFO     | 
[2025-11-25 01:20:51] 2025-11-25 00:20:13,979 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-25 01:20:51] 2025-11-25 00:20:14,387 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,393 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,394 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,394 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,394 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,394 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,394 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,394 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,394 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,394 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,395 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,395 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,395 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,395 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,395 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,395 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,395 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,395 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 01:20:51] 2025-11-25 00:20:14,395 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,395 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 01:20:51] 2025-11-25 00:20:14,396 | INFO     | job 6893848603 has completed (purged errors)
[2025-11-25 01:20:51] 2025-11-25 00:20:14,396 | INFO     | overall cleanup function is called
[2025-11-25 01:20:51] 2025-11-25 00:20:15,415 | INFO     | --- collectZombieJob: --- 10, [7061]
[2025-11-25 01:20:51] 2025-11-25 00:20:15,416 | INFO     | zombie collector waiting for pid 7061
[2025-11-25 01:20:51] 2025-11-25 00:20:15,416 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 01:20:51] 2025-11-25 00:20:15,416 | INFO     | collected zombie processes
[2025-11-25 01:20:51] 2025-11-25 00:20:15,416 | INFO     | will attempt to kill all subprocesses of pid=7061
[2025-11-25 01:20:51] 2025-11-25 00:20:15,533 | INFO     | process IDs to be killed: [7061] (in reverse order)
[2025-11-25 01:20:51] 2025-11-25 00:20:16,337 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 01:20:51] 2025-11-25 00:20:16,337 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 01:20:51] 2025-11-25 00:20:16,341 | INFO     | did not find any defunct processes belonging to 7061
[2025-11-25 01:20:51] 2025-11-25 00:20:16,347 | INFO     | did not find any defunct processes belonging to 7061
[2025-11-25 01:20:51] 2025-11-25 00:20:16,401 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:20:51] 2025-11-25 00:20:16,401 | INFO     | ready for new job
[2025-11-25 01:20:51] 2025-11-25 00:20:16,401 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 01:20:51] 2025-11-25 00:20:16,406 | INFO     | ***************************************
[2025-11-25 01:20:51] 2025-11-25 00:20:16,406 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 01:20:51] 2025-11-25 00:20:16,407 | INFO     | ***************************************
[2025-11-25 01:20:51] 2025-11-25 00:20:16,407 | INFO     | 
[2025-11-25 01:20:51] 2025-11-25 00:20:16,407 | INFO     | pilot is running in a VM
[2025-11-25 01:20:51] 2025-11-25 00:20:16,408 | INFO     | architecture information:
[2025-11-25 01:20:51] 2025-11-25 00:20:16,425 | INFO     | executing command: cat /etc/os-release
[2025-11-25 01:20:51] 2025-11-25 00:20:16,611 | INFO     | cat /etc/os-release:
[2025-11-25 01:20:51] NAME="CentOS Linux"
[2025-11-25 01:20:51] VERSION="7 (Core)"
[2025-11-25 01:20:51] ID="centos"
[2025-11-25 01:20:51] ID_LIKE="rhel fedora"
[2025-11-25 01:20:51] VERSION_ID="7"
[2025-11-25 01:20:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 01:20:51] ANSI_COLOR="0;31"
[2025-11-25 01:20:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 01:20:51] HOME_URL="https://www.centos.org/"
[2025-11-25 01:20:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 01:20:51] 
[2025-11-25 01:20:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 01:20:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 01:20:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 01:20:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 01:20:51] 
[2025-11-25 01:20:51] 2025-11-25 00:20:16,611 | INFO     | ***************************************
[2025-11-25 01:20:51] 2025-11-25 00:20:17,115 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-25 01:20:51] 2025-11-25 00:20:17,364 | INFO     | sufficient remaining disk space (494888026112 B)
[2025-11-25 01:20:51] 2025-11-25 00:20:17,364 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 01:20:51] 2025-11-25 00:20:17,364 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:20:51] 2025-11-25 00:20:17,364 | INFO     | update_server=False
[2025-11-25 01:20:51] 2025-11-25 00:20:17,364 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:20:51] 2025-11-25 00:20:17,454 | INFO     | all job control threads have been joined
[2025-11-25 01:20:51] 2025-11-25 00:20:17,618 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:20:51] 2025-11-25 00:20:17,619 | INFO     | aborting loop
[2025-11-25 01:20:51] 2025-11-25 00:20:17,658 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:20:51] 2025-11-25 00:20:18,221 | INFO     | all data control threads have been joined
[2025-11-25 01:20:51] 2025-11-25 00:20:18,288 | INFO     | all payload control threads have been joined
[2025-11-25 01:20:51] 2025-11-25 00:20:18,371 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:20:51] 2025-11-25 00:20:18,421 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:20:51] 2025-11-25 00:20:18,460 | INFO     | [job] control thread has finished
[2025-11-25 01:20:51] 2025-11-25 00:20:18,545 | INFO     | [job] validate thread has finished
[2025-11-25 01:20:51] 2025-11-25 00:20:18,624 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:20:51] 2025-11-25 00:20:18,757 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:20:51] 2025-11-25 00:20:18,796 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:20:51] 2025-11-25 00:20:18,815 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:20:51] 2025-11-25 00:20:19,153 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:20:51] 2025-11-25 00:20:19,227 | INFO     | [data] control thread has finished
[2025-11-25 01:20:51] 2025-11-25 00:20:19,294 | INFO     | [payload] control thread has finished
[2025-11-25 01:20:51] 2025-11-25 00:20:19,615 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:20:51] 2025-11-25 00:20:19,616 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:20:51] 2025-11-25 00:20:19,665 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:20:51] 2025-11-25 00:20:19,763 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:20:51] 2025-11-25 00:20:19,842 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:20:51] 2025-11-25 00:20:19,956 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:20:51] 2025-11-25 00:20:23,968 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:20:51] 2025-11-25 00:20:34,564 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:20:51] 2025-11-25 00:20:36,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139635866433344)>', '<ExcThread(monitor, started 139635283977984)>']
[2025-11-25 01:20:51] 2025-11-25 00:20:41,074 | INFO     | all workflow threads have been joined
[2025-11-25 01:20:51] 2025-11-25 00:20:41,075 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:20:51] 2025-11-25 00:20:41,075 | INFO     | traces error code: 0
[2025-11-25 01:20:51] 2025-11-25 00:20:41,075 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:20:51] 2025-11-25 00:20:47,046 | INFO     | PID=426 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-11-25 01:20:51] 2025-11-25 00:20:47,046 | INFO     | .. there are 9 such processes running
[2025-11-25 01:20:51] 2025-11-25 00:20:47,048 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:20:51] 2025-11-25 00:20:47,048 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:20:51] 2025-11-25 00:20:47,048 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:20:51] 2025-11-25 00:20:47,048 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:20:51] 2025-11-25 00:20:47,048 | INFO     | [monitor] control thread has ended
[2025-11-25 01:20:51] 2025-11-25 00:20:47,493 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:20:51] 2025-11-25 00:20:47,585 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:20:51] 2025-11-25 00:20:47,673 [wrapper] pilotpid: 426
[2025-11-25 01:20:51] 2025-11-25 00:20:47,786 [wrapper] Pilot exit status: 0
[2025-11-25 01:20:51] 2025-11-25 00:20:48,106 [wrapper] pandaids: 6893848603
[2025-11-25 01:20:51] 2025-11-25 00:20:48,773 [wrapper] cleanup supervisor_pilot 21820 427
[2025-11-25 01:20:51] 2025-11-25 00:20:48,840 [wrapper] Test setup, not cleaning
[2025-11-25 01:20:51] 2025-11-25 00:20:48,892 [wrapper] apfmon messages muted
[2025-11-25 01:20:51] 2025-11-25 00:20:48,959 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:20:51] 2025-11-25 00:20:49,032 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:20:51]  *** Error codes and diagnostics ***
[2025-11-25 01:20:51]     "exeErrorCode": 0,
[2025-11-25 01:20:51]     "exeErrorDiag": "",
[2025-11-25 01:20:51]     "pilotErrorCode": 0,
[2025-11-25 01:20:51]     "pilotErrorDiag": "",
[2025-11-25 01:20:51]  *** Listing of results directory ***
[2025-11-25 01:20:51] total 1346368
[2025-11-25 01:20:51] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-25 01:20:51] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:48 queuedata.json
[2025-11-25 01:20:51] -rwx------. 1 boinc boinc     36292 Nov 20 11:48 runpilot2-wrapper.sh
[2025-11-25 01:20:51] -rw-r--r--. 1 boinc boinc       100 Nov 24 03:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:20:51] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 03:12 run_atlas
[2025-11-25 01:20:51] -rw-r--r--. 1 boinc boinc       105 Nov 24 03:12 job.xml
[2025-11-25 01:20:51] -rw-r--r--. 2 boinc boinc 409247115 Nov 24 03:12 EVNT.47493127._000282.pool.root.1
[2025-11-25 01:20:51] -rw-r--r--. 2 boinc boinc    590103 Nov 24 03:12 input.tar.gz
[2025-11-25 01:20:51] -rw-r--r--. 1 boinc boinc      6391 Nov 24 03:12 init_data.xml
[2025-11-25 01:20:51] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:12 start_atlas.sh
[2025-11-25 01:20:51] drwxrwx--x. 2 boinc boinc        68 Nov 24 03:12 shared
[2025-11-25 01:20:51] -rw-r--r--. 1 boinc boinc         0 Nov 24 03:12 boinc_lockfile
[2025-11-25 01:20:51] -rw-r--r--. 1 boinc boinc      2786 Nov 24 03:12 pandaJob.out
[2025-11-25 01:20:51] -rw-------. 1 boinc boinc    989786 Nov 24 03:16 agis_schedconf.cvmfs.json
[2025-11-25 01:20:51] drwx------. 5 boinc boinc      4096 Nov 24 03:16 pilot3
[2025-11-25 01:20:51] -rw-r--r--. 1 boinc boinc       533 Nov 25 00:47 boinc_task_state.xml
[2025-11-25 01:20:51] -rw-------. 1 boinc boinc 939777329 Nov 25 01:17 HITS.47523449._002819.pool.root.1
[2025-11-25 01:20:51] -rw-------. 1 boinc boinc      1033 Nov 25 01:18 memory_monitor_summary.json
[2025-11-25 01:20:51] -rw-------. 1 boinc boinc   1516227 Nov 25 01:18 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:20:51] -rw-------. 1 boinc boinc   2404209 Nov 25 01:18 log.47523449._002819.job.log.tgz.1
[2025-11-25 01:20:51] -rw-------. 1 boinc boinc      7946 Nov 25 01:20 heartbeat.json
[2025-11-25 01:20:51] -rw-r--r--. 1 boinc boinc        29 Nov 25 01:20 wrapper_checkpoint.txt
[2025-11-25 01:20:51] -rw-r--r--. 1 boinc boinc      8192 Nov 25 01:20 boinc_mmap_file
[2025-11-25 01:20:51] -rw-------. 1 boinc boinc        95 Nov 25 01:20 pilot_heartbeat.json
[2025-11-25 01:20:51] -rw-------. 1 boinc boinc       818 Nov 25 01:20 pilotlog.txt
[2025-11-25 01:20:51] -rw-------. 1 boinc boinc  10484071 Nov 25 01:20 log.47523449._002819.job.log.1
[2025-11-25 01:20:51] -rw-------. 1 boinc boinc       353 Nov 25 01:20 output.list
[2025-11-25 01:20:51] -rw-r--r--. 1 boinc boinc       620 Nov 25 01:20 runtime_log
[2025-11-25 01:20:51] -rw-------. 1 boinc boinc  12902400 Nov 25 01:20 result.tar.gz
[2025-11-25 01:20:51] -rw-r--r--. 1 boinc boinc      8817 Nov 25 01:20 runtime_log.err
[2025-11-25 01:20:51] -rw-------. 1 boinc boinc       662 Nov 25 01:20 8V7LDmiOHg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqTGKDmYkOYxn.diag
[2025-11-25 01:20:51] -rw-r--r--. 1 boinc boinc     21494 Nov 25 01:20 stderr.txt
[2025-11-25 01:20:51] HITS file was successfully produced:
[2025-11-25 01:20:51] -rw-------. 1 boinc boinc 939777329 Nov 25 01:17 shared/HITS.pool.root.1
[2025-11-25 01:20:51]  *** Contents of shared directory: ***
[2025-11-25 01:20:51] total 1330604
[2025-11-25 01:20:51] -rw-r--r--. 2 boinc boinc 409247115 Nov 24 03:12 ATLAS.root_0
[2025-11-25 01:20:51] -rw-r--r--. 2 boinc boinc    590103 Nov 24 03:12 input.tar.gz
[2025-11-25 01:20:51] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:12 start_atlas.sh
[2025-11-25 01:20:51] -rw-------. 1 boinc boinc 939777329 Nov 25 01:17 HITS.pool.root.1
[2025-11-25 01:20:51] -rw-------. 1 boinc boinc  12902400 Nov 25 01:20 result.tar.gz
01:20:52 (29077): run_atlas exited; CPU time 349970.703880
01:20:52 (29077): called boinc_finish(0)

</stderr_txt>
]]>

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