Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:37:45 (9292): wrapper (7.7.26015): starting
03:37:45 (9292): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:37:45] Arguments: --nthreads 8
[2025-11-24 03:37:45] Threads: 8
[2025-11-24 03:37:45] Checking for CVMFS
[2025-11-24 03:37:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:37:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:37:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:37:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:37:47] 2.11.2.0 32354 281872 140308 153229 3 180 17094240 25165824 4632 130560 3 132461957 99.862 82930315 2990 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 03:37:47] CVMFS is ok
[2025-11-24 03:37:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:37:47] Checking for apptainer binary...
[2025-11-24 03:37:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:37:47] Running /usr/bin/apptainer --version
[2025-11-24 03:37:47] apptainer version 1.3.2-1.el7
[2025-11-24 03:37:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:38:08] cg-vwn392.simple-grid.lan
[2025-11-24 03:38:08] apptainer works
[2025-11-24 03:38:08] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:38:08] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:38:08] Starting ATLAS job with PandaID=6893879184
[2025-11-24 03:38:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 02:28:09]  *** The last 200 lines of the pilot log: ***
[2025-11-25 02:28:09] 2025-11-25 01:26:48,973 | INFO     | time since job start (81910s) is within the limit (172800.0s)
[2025-11-25 02:28:09] 2025-11-25 01:26:50,556 | INFO     | monitor loop #5493: job 0:6893879184 is in state 'finished'
[2025-11-25 02:28:09] 2025-11-25 01:26:50,557 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:28:09] 2025-11-25 01:26:50,980 | INFO     | time since job start (81912s) is within the limit (172800.0s)
[2025-11-25 02:28:09] 2025-11-25 01:26:52,989 | INFO     | time since job start (81914s) is within the limit (172800.0s)
[2025-11-25 02:28:09] 2025-11-25 01:26:53,066 | INFO     | monitor loop #5494: job 0:6893879184 is in state 'finished'
[2025-11-25 02:28:09] 2025-11-25 01:26:53,067 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:28:09] 2025-11-25 01:26:55,001 | INFO     | time since job start (81917s) is within the limit (172800.0s)
[2025-11-25 02:28:09] 2025-11-25 01:26:55,577 | INFO     | monitor loop #5495: job 0:6893879184 is in state 'finished'
[2025-11-25 02:28:09] 2025-11-25 01:26:55,578 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:28:09] 2025-11-25 01:26:57,009 | INFO     | time since job start (81919s) is within the limit (172800.0s)
[2025-11-25 02:28:09] 2025-11-25 01:26:58,082 | INFO     | monitor loop #5496: job 0:6893879184 is in state 'finished'
[2025-11-25 02:28:09] 2025-11-25 01:26:58,083 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:28:09] 2025-11-25 01:26:59,018 | INFO     | time since job start (81921s) is within the limit (172800.0s)
[2025-11-25 02:28:09] 2025-11-25 01:27:00,014 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 02:28:09] 2025-11-25 01:27:00,015 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 02:28:09] 2025-11-25 01:27:00,017 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6893879184/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 02:28:09] 2025-11-25 01:27:00,017 | INFO     | extracted standard info from prmon json
[2025-11-25 02:28:09] 2025-11-25 01:27:00,018 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 02:28:09] 2025-11-25 01:27:00,018 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 02:28:09] 2025-11-25 01:27:00,050 | INFO     | fitting pss+swap vs Time
[2025-11-25 02:28:09] 2025-11-25 01:27:00,058 | INFO     | sum of square deviations: 734458582650.2089
[2025-11-25 02:28:09] 2025-11-25 01:27:00,123 | INFO     | sum of deviations: 3407005303007.275
[2025-11-25 02:28:09] 2025-11-25 01:27:00,124 | INFO     | mean x: 1763993270.1155288
[2025-11-25 02:28:09] 2025-11-25 01:27:00,124 | INFO     | mean y: 2848140.3488372094
[2025-11-25 02:28:09] 2025-11-25 01:27:00,124 | INFO     | intersect: -8179961030.54627
[2025-11-25 02:28:09] 2025-11-25 01:27:00,126 | INFO     | chi2: 20.94986289964811
[2025-11-25 02:28:09] 2025-11-25 01:27:00,128 | INFO     | sum of square deviations: 726225244588.9641
[2025-11-25 02:28:09] 2025-11-25 01:27:00,188 | INFO     | sum of deviations: 3850839652547.9175
[2025-11-25 02:28:09] 2025-11-25 01:27:00,188 | INFO     | mean x: 1763993117.6197288
[2025-11-25 02:28:09] 2025-11-25 01:27:00,188 | INFO     | mean y: 2856359.3998493976
[2025-11-25 02:28:09] 2025-11-25 01:27:00,188 | INFO     | intersect: -9350790728.421173
[2025-11-25 02:28:09] 2025-11-25 01:27:00,190 | INFO     | chi2: 17.75741342348368
[2025-11-25 02:28:09] 2025-11-25 01:27:00,190 | INFO     | current chi2=17.75741342348368 (change=15.238522044065755 %)
[2025-11-25 02:28:09] 2025-11-25 01:27:00,190 | INFO     | right removable region: 1327
[2025-11-25 02:28:09] 2025-11-25 01:27:00,192 | INFO     | sum of square deviations: 726224337518.9631
[2025-11-25 02:28:09] 2025-11-25 01:27:00,245 | INFO     | sum of deviations: 2844498027536.494
[2025-11-25 02:28:09] 2025-11-25 01:27:00,245 | INFO     | mean x: 1763993422.6197288
[2025-11-25 02:28:09] 2025-11-25 01:27:00,245 | INFO     | mean y: 2858557.767319277
[2025-11-25 02:28:09] 2025-11-25 01:27:00,246 | INFO     | intersect: -6906405635.128373
[2025-11-25 02:28:09] 2025-11-25 01:27:00,247 | INFO     | chi2: 16.163012488835605
[2025-11-25 02:28:09] 2025-11-25 01:27:00,247 | INFO     | current chi2=16.163012488835605 (change=22.84907750347573 %)
[2025-11-25 02:28:09] 2025-11-25 01:27:00,247 | INFO     | left removable region: 10
[2025-11-25 02:28:09] 2025-11-25 01:27:00,249 | INFO     | sum of square deviations: 708327184738.0566
[2025-11-25 02:28:09] 2025-11-25 01:27:00,299 | INFO     | sum of deviations: 2888980588558.971
[2025-11-25 02:28:09] 2025-11-25 01:27:00,300 | INFO     | mean x: 1763993392.1290812
[2025-11-25 02:28:09] 2025-11-25 01:27:00,300 | INFO     | mean y: 2878019.9119210327
[2025-11-25 02:28:09] 2025-11-25 01:27:00,300 | INFO     | intersect: -7191738787.13861
[2025-11-25 02:28:09] 2025-11-25 01:27:00,302 | INFO     | chi2: 8.555842326429898
[2025-11-25 02:28:09] 2025-11-25 01:27:00,302 | INFO     | current memory leak: 4.08 B/s (using 1317 data points, chi2=8.56)
[2025-11-25 02:28:09] 2025-11-25 01:27:00,304 | INFO     | could have reported an average CPU frequency of 1999 MHz (45 samples)
[2025-11-25 02:28:09] 2025-11-25 01:27:00,304 | INFO     | ..............................
[2025-11-25 02:28:09] 2025-11-25 01:27:00,304 | INFO     | . Timing measurements:
[2025-11-25 02:28:09] 2025-11-25 01:27:00,304 | INFO     | . get job = 0 s
[2025-11-25 02:28:09] 2025-11-25 01:27:00,304 | INFO     | . initial setup = 4 s
[2025-11-25 02:28:09] 2025-11-25 01:27:00,304 | INFO     | . payload setup = 181 s
[2025-11-25 02:28:09] 2025-11-25 01:27:00,304 | INFO     | . stage-in = 0 s
[2025-11-25 02:28:09] 2025-11-25 01:27:00,305 | INFO     | . payload execution = 81436 s
[2025-11-25 02:28:09] 2025-11-25 01:27:00,305 | INFO     | . stage-out = 5 s
[2025-11-25 02:28:09] 2025-11-25 01:27:00,305 | INFO     | . log creation = 2 s
[2025-11-25 02:28:09] 2025-11-25 01:27:00,305 | INFO     | ..............................
[2025-11-25 02:28:09] 2025-11-25 01:27:00,424 | INFO     | 
[2025-11-25 02:28:09] 2025-11-25 01:27:00,424 | INFO     | job summary report
[2025-11-25 02:28:09] 2025-11-25 01:27:00,424 | INFO     | --------------------------------------------------
[2025-11-25 02:28:09] 2025-11-25 01:27:00,425 | INFO     | PanDA job id: 6893879184
[2025-11-25 02:28:09] 2025-11-25 01:27:00,425 | INFO     | task id: 47523449
[2025-11-25 02:28:09] 2025-11-25 01:27:00,425 | INFO     | errors: (none)
[2025-11-25 02:28:09] 2025-11-25 01:27:00,425 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 02:28:09] 2025-11-25 01:27:00,425 | INFO     | pilot state: finished 
[2025-11-25 02:28:09] 2025-11-25 01:27:00,425 | INFO     | transexitcode: 0
[2025-11-25 02:28:09] 2025-11-25 01:27:00,425 | INFO     | exeerrorcode: 0
[2025-11-25 02:28:09] 2025-11-25 01:27:00,425 | INFO     | exeerrordiag: 
[2025-11-25 02:28:09] 2025-11-25 01:27:00,425 | INFO     | exitcode: 0
[2025-11-25 02:28:09] 2025-11-25 01:27:00,425 | INFO     | exitmsg: OK
[2025-11-25 02:28:09] 2025-11-25 01:27:00,425 | INFO     | cpuconsumptiontime: 336830 s
[2025-11-25 02:28:09] 2025-11-25 01:27:00,425 | INFO     | nevents: 1000
[2025-11-25 02:28:09] 2025-11-25 01:27:00,426 | INFO     | neventsw: 0
[2025-11-25 02:28:09] 2025-11-25 01:27:00,426 | INFO     | pid: 19689
[2025-11-25 02:28:09] 2025-11-25 01:27:00,426 | INFO     | pgrp: 19689
[2025-11-25 02:28:09] 2025-11-25 01:27:00,426 | INFO     | corecount: 8
[2025-11-25 02:28:09] 2025-11-25 01:27:00,426 | INFO     | event service: False
[2025-11-25 02:28:09] 2025-11-25 01:27:00,426 | INFO     | sizes: {0: 2298478, 1: 2298562, 2: 2298761, 13: 2298761, 23: 2298817, 34: 2298845, 45: 2299001, 56: 2299029, 66: 2299057, 77: 2299085, 88: 2299141, 98: 2299711, 99
[2025-11-25 02:28:09] 2025-11-25 01:27:00,426 | INFO     | --------------------------------------------------
[2025-11-25 02:28:09] 2025-11-25 01:27:00,426 | INFO     | 
[2025-11-25 02:28:09] 2025-11-25 01:27:00,426 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-25 02:28:09] 2025-11-25 01:27:00,979 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,979 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,979 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,979 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,980 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,980 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,980 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,980 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,980 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,980 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,980 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,980 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,981 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,981 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,981 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,981 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,981 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,981 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 02:28:09] 2025-11-25 01:27:00,981 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,981 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 02:28:09] 2025-11-25 01:27:00,982 | INFO     | job 6893879184 has completed (purged errors)
[2025-11-25 02:28:09] 2025-11-25 01:27:00,982 | INFO     | overall cleanup function is called
[2025-11-25 02:28:09] 2025-11-25 01:27:02,003 | INFO     | --- collectZombieJob: --- 10, [19689]
[2025-11-25 02:28:09] 2025-11-25 01:27:02,004 | INFO     | zombie collector waiting for pid 19689
[2025-11-25 02:28:09] 2025-11-25 01:27:02,004 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 02:28:09] 2025-11-25 01:27:02,004 | INFO     | collected zombie processes
[2025-11-25 02:28:09] 2025-11-25 01:27:02,004 | INFO     | will attempt to kill all subprocesses of pid=19689
[2025-11-25 02:28:09] 2025-11-25 01:27:02,139 | INFO     | process IDs to be killed: [19689] (in reverse order)
[2025-11-25 02:28:09] 2025-11-25 01:27:03,245 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 02:28:09] 2025-11-25 01:27:03,245 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 02:28:09] 2025-11-25 01:27:03,248 | INFO     | did not find any defunct processes belonging to 19689
[2025-11-25 02:28:09] 2025-11-25 01:27:03,251 | INFO     | did not find any defunct processes belonging to 19689
[2025-11-25 02:28:09] 2025-11-25 01:27:03,304 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 02:28:09] 2025-11-25 01:27:03,304 | INFO     | ready for new job
[2025-11-25 02:28:09] 2025-11-25 01:27:03,304 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 02:28:09] 2025-11-25 01:27:03,310 | INFO     | ***************************************
[2025-11-25 02:28:09] 2025-11-25 01:27:03,311 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 02:28:09] 2025-11-25 01:27:03,311 | INFO     | ***************************************
[2025-11-25 02:28:09] 2025-11-25 01:27:03,311 | INFO     | 
[2025-11-25 02:28:09] 2025-11-25 01:27:03,311 | INFO     | pilot is running in a VM
[2025-11-25 02:28:09] 2025-11-25 01:27:03,312 | INFO     | architecture information:
[2025-11-25 02:28:09] 2025-11-25 01:27:03,318 | INFO     | executing command: cat /etc/os-release
[2025-11-25 02:28:09] 2025-11-25 01:27:03,630 | INFO     | cat /etc/os-release:
[2025-11-25 02:28:09] NAME="CentOS Linux"
[2025-11-25 02:28:09] VERSION="7 (Core)"
[2025-11-25 02:28:09] ID="centos"
[2025-11-25 02:28:09] ID_LIKE="rhel fedora"
[2025-11-25 02:28:09] VERSION_ID="7"
[2025-11-25 02:28:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 02:28:09] ANSI_COLOR="0;31"
[2025-11-25 02:28:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 02:28:09] HOME_URL="https://www.centos.org/"
[2025-11-25 02:28:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 02:28:09] 
[2025-11-25 02:28:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 02:28:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 02:28:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 02:28:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 02:28:09] 
[2025-11-25 02:28:09] 2025-11-25 01:27:03,630 | INFO     | ***************************************
[2025-11-25 02:28:09] 2025-11-25 01:27:04,134 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-25 02:28:09] 2025-11-25 01:27:04,361 | INFO     | sufficient remaining disk space (495159607296 B)
[2025-11-25 02:28:09] 2025-11-25 01:27:04,362 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 02:28:09] 2025-11-25 01:27:04,362 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 02:28:09] 2025-11-25 01:27:04,362 | INFO     | update_server=False
[2025-11-25 02:28:09] 2025-11-25 01:27:04,362 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 02:28:09] 2025-11-25 01:27:04,362 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:28:09] 2025-11-25 01:27:04,362 | INFO     | aborting loop
[2025-11-25 02:28:09] 2025-11-25 01:27:04,445 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 02:28:09] 2025-11-25 01:27:04,573 | INFO     | all data control threads have been joined
[2025-11-25 02:28:09] 2025-11-25 01:27:04,905 | INFO     | all job control threads have been joined
[2025-11-25 02:28:09] 2025-11-25 01:27:04,933 | INFO     | all payload control threads have been joined
[2025-11-25 02:28:09] 2025-11-25 01:27:05,368 | INFO     | [job] retrieve thread has finished
[2025-11-25 02:28:09] 2025-11-25 01:27:05,369 | INFO     | [job] job monitor thread has finished
[2025-11-25 02:28:09] 2025-11-25 01:27:05,439 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:28:09] 2025-11-25 01:27:05,579 | INFO     | [data] control thread has finished
[2025-11-25 02:28:09] 2025-11-25 01:27:05,799 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 02:28:09] 2025-11-25 01:27:05,911 | INFO     | [job] control thread has finished
[2025-11-25 02:28:09] 2025-11-25 01:27:05,912 | INFO     | [data] copytool_in thread has finished
[2025-11-25 02:28:09] 2025-11-25 01:27:05,938 | INFO     | [payload] control thread has finished
[2025-11-25 02:28:09] 2025-11-25 01:27:06,048 | INFO     | [payload] validate_post thread has finished
[2025-11-25 02:28:09] 2025-11-25 01:27:06,135 | INFO     | [job] validate thread has finished
[2025-11-25 02:28:09] 2025-11-25 01:27:06,445 | INFO     | [job] queue monitor thread has finished
[2025-11-25 02:28:09] 2025-11-25 01:27:06,452 | INFO     | [data] copytool_out thread has finished
[2025-11-25 02:28:09] 2025-11-25 01:27:06,466 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 02:28:09] 2025-11-25 01:27:06,532 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 02:28:09] 2025-11-25 01:27:06,701 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 02:28:09] 2025-11-25 01:27:06,821 | INFO     | [payload] failed_post thread has finished
[2025-11-25 02:28:09] 2025-11-25 01:27:10,541 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 02:28:09] 2025-11-25 01:27:14,764 | INFO     | job.realtimelogging is not enabled
[2025-11-25 02:28:09] 2025-11-25 01:27:15,770 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 02:28:09] 2025-11-25 01:27:32,295 | INFO     | PID=13109 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 02:28:09] 2025-11-25 01:27:32,295 | INFO     | .. there are 9 such processes running
[2025-11-25 02:28:09] 2025-11-25 01:27:32,295 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 02:28:09] 2025-11-25 01:27:32,296 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 02:28:09] 2025-11-25 01:27:32,296 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 02:28:09] 2025-11-25 01:27:50,935 [wrapper] supervise_pilot (15 min periods counter: 92)
[2025-11-25 02:28:09] 2025-11-25 01:28:00,357 | INFO     | [monitor] cgroup control has ended
[2025-11-25 02:28:09] 2025-11-25 01:28:02,311 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140439386404672)>', '<ExcThread(monitor, started 140439071987456)>']
[2025-11-25 02:28:09] 2025-11-25 01:28:02,476 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 02:28:09] 2025-11-25 01:28:02,477 | INFO     | [monitor] control thread has ended
[2025-11-25 02:28:09] 2025-11-25 01:28:07,337 | INFO     | all workflow threads have been joined
[2025-11-25 02:28:09] 2025-11-25 01:28:07,338 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 02:28:09] 2025-11-25 01:28:07,338 | INFO     | traces error code: 0
[2025-11-25 02:28:09] 2025-11-25 01:28:07,338 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 02:28:09] 2025-11-25 01:28:07,620 [wrapper] ==== pilot stdout END ====
[2025-11-25 02:28:09] 2025-11-25 01:28:07,720 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 02:28:09] 2025-11-25 01:28:07,782 [wrapper] pilotpid: 13109
[2025-11-25 02:28:09] 2025-11-25 01:28:07,894 [wrapper] Pilot exit status: 0
[2025-11-25 02:28:09] 2025-11-25 01:28:08,266 [wrapper] pandaids: 6893879184
[2025-11-25 02:28:09] 2025-11-25 01:28:08,882 [wrapper] cleanup supervisor_pilot  7577 13110
[2025-11-25 02:28:09] 2025-11-25 01:28:08,910 [wrapper] Test setup, not cleaning
[2025-11-25 02:28:09] 2025-11-25 01:28:08,949 [wrapper] apfmon messages muted
[2025-11-25 02:28:09] 2025-11-25 01:28:09,002 [wrapper] ==== wrapper stdout END ====
[2025-11-25 02:28:09] 2025-11-25 01:28:09,057 [wrapper] ==== wrapper stderr END ====
[2025-11-25 02:28:09]  *** Error codes and diagnostics ***
[2025-11-25 02:28:09]     "exeErrorCode": 0,
[2025-11-25 02:28:09]     "exeErrorDiag": "",
[2025-11-25 02:28:09]     "pilotErrorCode": 0,
[2025-11-25 02:28:09]     "pilotErrorDiag": "",
[2025-11-25 02:28:09]  *** Listing of results directory ***
[2025-11-25 02:28:09] total 1341828
[2025-11-25 02:28:09] -rw-r--r--. 1 boinc boinc    576529 Nov 20 19:04 pilot3.tar.gz
[2025-11-25 02:28:09] -rwx------. 1 boinc boinc     36292 Nov 20 20:01 runpilot2-wrapper.sh
[2025-11-25 02:28:09] -rw-r--r--. 1 boinc boinc      5112 Nov 20 20:01 queuedata.json
[2025-11-25 02:28:09] -rw-r--r--. 1 boinc boinc       100 Nov 24 03:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 02:28:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 03:37 run_atlas
[2025-11-25 02:28:09] -rw-r--r--. 1 boinc boinc       105 Nov 24 03:37 job.xml
[2025-11-25 02:28:09] -rw-r--r--. 2 boinc boinc 412596406 Nov 24 03:37 EVNT.47493127._000817.pool.root.1
[2025-11-25 02:28:09] -rw-r--r--. 1 boinc boinc      6392 Nov 24 03:37 init_data.xml
[2025-11-25 02:28:09] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:37 start_atlas.sh
[2025-11-25 02:28:09] drwxrwx--x. 2 boinc boinc        68 Nov 24 03:37 shared
[2025-11-25 02:28:09] -rw-r--r--. 2 boinc boinc    590094 Nov 24 03:37 input.tar.gz
[2025-11-25 02:28:09] -rw-r--r--. 1 boinc boinc         0 Nov 24 03:37 boinc_lockfile
[2025-11-25 02:28:09] -rw-r--r--. 1 boinc boinc      2784 Nov 24 03:38 pandaJob.out
[2025-11-25 02:28:09] -rw-------. 1 boinc boinc    989786 Nov 24 03:41 agis_schedconf.cvmfs.json
[2025-11-25 02:28:09] drwx------. 5 boinc boinc      4096 Nov 24 03:41 pilot3
[2025-11-25 02:28:09] -rw-r--r--. 1 boinc boinc       533 Nov 25 02:07 boinc_task_state.xml
[2025-11-25 02:28:09] -rw-------. 1 boinc boinc 930849698 Nov 25 02:23 HITS.47523449._008162.pool.root.1
[2025-11-25 02:28:09] -rw-------. 1 boinc boinc      1035 Nov 25 02:25 memory_monitor_summary.json
[2025-11-25 02:28:09] -rw-------. 1 boinc boinc   1516227 Nov 25 02:25 agis_ddmendpoints.agis.ALL.json
[2025-11-25 02:28:09] -rw-------. 1 boinc boinc   2435541 Nov 25 02:25 log.47523449._008162.job.log.tgz.1
[2025-11-25 02:28:09] -rw-------. 1 boinc boinc        95 Nov 25 02:26 pilot_heartbeat.json
[2025-11-25 02:28:09] -rw-------. 1 boinc boinc      7945 Nov 25 02:27 heartbeat.json
[2025-11-25 02:28:09] -rw-r--r--. 1 boinc boinc      8192 Nov 25 02:27 boinc_mmap_file
[2025-11-25 02:28:09] -rw-r--r--. 1 boinc boinc        29 Nov 25 02:27 wrapper_checkpoint.txt
[2025-11-25 02:28:09] -rw-------. 1 boinc boinc      4956 Nov 25 02:28 pilotlog.txt
[2025-11-25 02:28:09] -rw-------. 1 boinc boinc  10907913 Nov 25 02:28 log.47523449._008162.job.log.1
[2025-11-25 02:28:09] -rw-------. 1 boinc boinc       353 Nov 25 02:28 output.list
[2025-11-25 02:28:09] -rw-r--r--. 1 boinc boinc       620 Nov 25 02:28 runtime_log
[2025-11-25 02:28:09] -rw-------. 1 boinc boinc  13363200 Nov 25 02:28 result.tar.gz
[2025-11-25 02:28:09] -rw-r--r--. 1 boinc boinc      8817 Nov 25 02:28 runtime_log.err
[2025-11-25 02:28:09] -rw-------. 1 boinc boinc       662 Nov 25 02:28 4j7MDmv5Og8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5yGKDm1K2Emn.diag
[2025-11-25 02:28:09] -rw-r--r--. 1 boinc boinc     21313 Nov 25 02:28 stderr.txt
[2025-11-25 02:28:09] HITS file was successfully produced:
[2025-11-25 02:28:09] -rw-------. 1 boinc boinc 930849698 Nov 25 02:23 shared/HITS.pool.root.1
[2025-11-25 02:28:09]  *** Contents of shared directory: ***
[2025-11-25 02:28:09] total 1325612
[2025-11-25 02:28:09] -rw-r--r--. 2 boinc boinc 412596406 Nov 24 03:37 ATLAS.root_0
[2025-11-25 02:28:09] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:37 start_atlas.sh
[2025-11-25 02:28:09] -rw-r--r--. 2 boinc boinc    590094 Nov 24 03:37 input.tar.gz
[2025-11-25 02:28:09] -rw-------. 1 boinc boinc 930849698 Nov 25 02:23 HITS.pool.root.1
[2025-11-25 02:28:09] -rw-------. 1 boinc boinc  13363200 Nov 25 02:28 result.tar.gz
02:28:11 (9292): run_atlas exited; CPU time 337048.911513
02:28:11 (9292): called boinc_finish(0)

</stderr_txt>
]]>

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