Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:45:03 (32630): wrapper (7.7.26015): starting
05:45:03 (32630): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 05:45:03] Arguments: --nthreads 8
[2025-11-24 05:45:03] Threads: 8
[2025-11-24 05:45:03] Checking for CVMFS
[2025-11-24 05:45:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 05:45:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 05:45:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 05:45:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 05:45:07] 2.11.2.0 17493 84383 120616 153233 4 118 14555768 25165824 4292 130560 2 23972941 99.870 13989135 1894 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 05:45:07] CVMFS is ok
[2025-11-24 05:45:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 05:45:07] Checking for apptainer binary...
[2025-11-24 05:45:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 05:45:07] Running /usr/bin/apptainer --version
[2025-11-24 05:45:07] apptainer version 1.3.2-1.el7
[2025-11-24 05:45:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 05:45:20] cg-vwn341.simple-grid.lan
[2025-11-24 05:45:20] apptainer works
[2025-11-24 05:45:20] Set ATHENA_PROC_NUMBER=8
[2025-11-24 05:45:20] Set ATHENA_CORE_NUMBER=8
[2025-11-24 05:45:20] Starting ATLAS job with PandaID=6893878606
[2025-11-24 05:45:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 03:42:43]  *** The last 200 lines of the pilot log: ***
[2025-11-25 03:42:43] 2025-11-25 02:41:33,730 | INFO     | monitor loop #5297: job 0:6893878606 is in state 'finished'
[2025-11-25 03:42:43] 2025-11-25 02:41:33,731 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:42:43] 2025-11-25 02:41:34,148 | INFO     | time since job start (78738s) is within the limit (172800.0s)
[2025-11-25 03:42:43] 2025-11-25 02:41:36,160 | INFO     | time since job start (78740s) is within the limit (172800.0s)
[2025-11-25 03:42:43] 2025-11-25 02:41:36,248 | INFO     | monitor loop #5298: job 0:6893878606 is in state 'finished'
[2025-11-25 03:42:43] 2025-11-25 02:41:36,249 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:42:43] 2025-11-25 02:41:38,168 | INFO     | time since job start (78742s) is within the limit (172800.0s)
[2025-11-25 03:42:43] 2025-11-25 02:41:38,753 | INFO     | monitor loop #5299: job 0:6893878606 is in state 'finished'
[2025-11-25 03:42:43] 2025-11-25 02:41:38,754 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:42:43] 2025-11-25 02:41:40,175 | INFO     | time since job start (78744s) is within the limit (172800.0s)
[2025-11-25 03:42:43] 2025-11-25 02:41:41,264 | INFO     | monitor loop #5300: job 0:6893878606 is in state 'finished'
[2025-11-25 03:42:43] 2025-11-25 02:41:41,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:42:43] 2025-11-25 02:41:42,186 | INFO     | time since job start (78746s) is within the limit (172800.0s)
[2025-11-25 03:42:43] 2025-11-25 02:41:43,771 | INFO     | monitor loop #5301: job 0:6893878606 is in state 'finished'
[2025-11-25 03:42:43] 2025-11-25 02:41:43,772 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:42:43] 2025-11-25 02:41:44,196 | INFO     | time since job start (78748s) is within the limit (172800.0s)
[2025-11-25 03:42:43] 2025-11-25 02:41:44,842 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 03:42:43] 2025-11-25 02:41:44,843 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 03:42:43] 2025-11-25 02:41:44,845 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6893878606/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 03:42:43] 2025-11-25 02:41:44,845 | INFO     | extracted standard info from prmon json
[2025-11-25 03:42:43] 2025-11-25 02:41:44,845 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 03:42:43] 2025-11-25 02:41:44,846 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 03:42:43] 2025-11-25 02:41:44,878 | INFO     | fitting pss+swap vs Time
[2025-11-25 03:42:43] 2025-11-25 02:41:44,881 | INFO     | sum of square deviations: 654877244302.0515
[2025-11-25 03:42:43] 2025-11-25 02:41:44,963 | INFO     | sum of deviations: 1372006630661.8896
[2025-11-25 03:42:43] 2025-11-25 02:41:44,963 | INFO     | mean x: 1763999222.0389712
[2025-11-25 03:42:43] 2025-11-25 02:41:44,963 | INFO     | mean y: 2863489.942322681
[2025-11-25 03:42:43] 2025-11-25 02:41:44,964 | INFO     | intersect: -3692819403.5735145
[2025-11-25 03:42:43] 2025-11-25 02:41:44,965 | INFO     | chi2: 18.703604591982398
[2025-11-25 03:42:43] 2025-11-25 02:41:44,968 | INFO     | sum of square deviations: 647251079959.1327
[2025-11-25 03:42:43] 2025-11-25 02:41:45,036 | INFO     | sum of deviations: 1797709904853.8228
[2025-11-25 03:42:43] 2025-11-25 02:41:45,036 | INFO     | mean x: 1763999069.543036
[2025-11-25 03:42:43] 2025-11-25 02:41:45,036 | INFO     | mean y: 2872001.530516432
[2025-11-25 03:42:43] 2025-11-25 02:41:45,037 | INFO     | intersect: -4896553735.496712
[2025-11-25 03:42:43] 2025-11-25 02:41:45,038 | INFO     | chi2: 15.415323457835267
[2025-11-25 03:42:43] 2025-11-25 02:41:45,038 | INFO     | current chi2=15.415323457835267 (change=17.581002196532243 %)
[2025-11-25 03:42:43] 2025-11-25 02:41:45,038 | INFO     | right removable region: 1277
[2025-11-25 03:42:43] 2025-11-25 02:41:45,040 | INFO     | sum of square deviations: 647250266829.1326
[2025-11-25 03:42:43] 2025-11-25 02:41:45,097 | INFO     | sum of deviations: 984040986546.0334
[2025-11-25 03:42:43] 2025-11-25 02:41:45,097 | INFO     | mean x: 1763999374.543036
[2025-11-25 03:42:43] 2025-11-25 02:41:45,098 | INFO     | mean y: 2871243.508607199
[2025-11-25 03:42:43] 2025-11-25 02:41:45,098 | INFO     | intersect: -2679008971.536806
[2025-11-25 03:42:43] 2025-11-25 02:41:45,100 | INFO     | chi2: 16.318984062849484
[2025-11-25 03:42:43] 2025-11-25 02:41:45,100 | INFO     | current chi2=16.318984062849484 (change=12.749523854643074 %)
[2025-11-25 03:42:43] 2025-11-25 02:41:45,100 | INFO     | left removable region: 10
[2025-11-25 03:42:43] 2025-11-25 02:41:45,102 | INFO     | sum of square deviations: 630681502298.4365
[2025-11-25 03:42:43] 2025-11-25 02:41:45,153 | INFO     | sum of deviations: 1409902837092.9753
[2025-11-25 03:42:43] 2025-11-25 02:41:45,153 | INFO     | mean x: 1763999344.0449882
[2025-11-25 03:42:43] 2025-11-25 02:41:45,154 | INFO     | mean y: 2883655.263614838
[2025-11-25 03:42:43] 2025-11-25 02:41:45,154 | INFO     | intersect: -3940576983.323981
[2025-11-25 03:42:43] 2025-11-25 02:41:45,155 | INFO     | chi2: 12.148879035943521
[2025-11-25 03:42:43] 2025-11-25 02:41:45,156 | INFO     | current memory leak: 2.24 B/s (using 1267 data points, chi2=12.15)
[2025-11-25 03:42:43] 2025-11-25 02:41:45,157 | INFO     | could have reported an average CPU frequency of 1999 MHz (43 samples)
[2025-11-25 03:42:43] 2025-11-25 02:41:45,158 | INFO     | ..............................
[2025-11-25 03:42:43] 2025-11-25 02:41:45,158 | INFO     | . Timing measurements:
[2025-11-25 03:42:43] 2025-11-25 02:41:45,158 | INFO     | . get job = 0 s
[2025-11-25 03:42:43] 2025-11-25 02:41:45,158 | INFO     | . initial setup = 5 s
[2025-11-25 03:42:43] 2025-11-25 02:41:45,158 | INFO     | . payload setup = 123 s
[2025-11-25 03:42:43] 2025-11-25 02:41:45,158 | INFO     | . stage-in = 0 s
[2025-11-25 03:42:43] 2025-11-25 02:41:45,158 | INFO     | . payload execution = 78293 s
[2025-11-25 03:42:43] 2025-11-25 02:41:45,159 | INFO     | . stage-out = 5 s
[2025-11-25 03:42:43] 2025-11-25 02:41:45,159 | INFO     | . log creation = 2 s
[2025-11-25 03:42:43] 2025-11-25 02:41:45,159 | INFO     | ..............................
[2025-11-25 03:42:43] 2025-11-25 02:41:45,286 | INFO     | 
[2025-11-25 03:42:43] 2025-11-25 02:41:45,287 | INFO     | job summary report
[2025-11-25 03:42:43] 2025-11-25 02:41:45,287 | INFO     | --------------------------------------------------
[2025-11-25 03:42:43] 2025-11-25 02:41:45,287 | INFO     | PanDA job id: 6893878606
[2025-11-25 03:42:43] 2025-11-25 02:41:45,287 | INFO     | task id: 47523449
[2025-11-25 03:42:43] 2025-11-25 02:41:45,287 | INFO     | errors: (none)
[2025-11-25 03:42:43] 2025-11-25 02:41:45,287 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 03:42:43] 2025-11-25 02:41:45,287 | INFO     | pilot state: finished 
[2025-11-25 03:42:43] 2025-11-25 02:41:45,287 | INFO     | transexitcode: 0
[2025-11-25 03:42:43] 2025-11-25 02:41:45,288 | INFO     | exeerrorcode: 0
[2025-11-25 03:42:43] 2025-11-25 02:41:45,288 | INFO     | exeerrordiag: 
[2025-11-25 03:42:43] 2025-11-25 02:41:45,288 | INFO     | exitcode: 0
[2025-11-25 03:42:43] 2025-11-25 02:41:45,288 | INFO     | exitmsg: OK
[2025-11-25 03:42:43] 2025-11-25 02:41:45,288 | INFO     | cpuconsumptiontime: 341883 s
[2025-11-25 03:42:43] 2025-11-25 02:41:45,288 | INFO     | nevents: 1000
[2025-11-25 03:42:43] 2025-11-25 02:41:45,288 | INFO     | neventsw: 0
[2025-11-25 03:42:43] 2025-11-25 02:41:45,288 | INFO     | pid: 10699
[2025-11-25 03:42:43] 2025-11-25 02:41:45,288 | INFO     | pgrp: 10699
[2025-11-25 03:42:43] 2025-11-25 02:41:45,289 | INFO     | corecount: 8
[2025-11-25 03:42:43] 2025-11-25 02:41:45,289 | INFO     | event service: False
[2025-11-25 03:42:43] 2025-11-25 02:41:45,289 | INFO     | sizes: {0: 2298530, 1: 2298785, 2: 2298785, 12: 2298813, 23: 2298841, 34: 2298869, 45: 2299025, 55: 2299053, 66: 2299081, 77: 2299109, 88: 2299165, 98: 2299473, 10
[2025-11-25 03:42:43] 2025-11-25 02:41:45,289 | INFO     | --------------------------------------------------
[2025-11-25 03:42:43] 2025-11-25 02:41:45,289 | INFO     | 
[2025-11-25 03:42:43] 2025-11-25 02:41:45,289 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-25 03:42:43] 2025-11-25 02:41:45,652 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,652 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,652 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,653 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,653 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,653 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,653 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,653 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,653 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,653 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,653 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,654 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,654 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,654 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,654 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,654 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,654 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,654 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 03:42:43] 2025-11-25 02:41:45,654 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,654 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 03:42:43] 2025-11-25 02:41:45,655 | INFO     | job 6893878606 has completed (purged errors)
[2025-11-25 03:42:43] 2025-11-25 02:41:45,655 | INFO     | overall cleanup function is called
[2025-11-25 03:42:43] 2025-11-25 02:41:46,672 | INFO     | --- collectZombieJob: --- 10, [10699]
[2025-11-25 03:42:43] 2025-11-25 02:41:46,673 | INFO     | zombie collector waiting for pid 10699
[2025-11-25 03:42:43] 2025-11-25 02:41:46,673 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 03:42:43] 2025-11-25 02:41:46,673 | INFO     | collected zombie processes
[2025-11-25 03:42:43] 2025-11-25 02:41:46,673 | INFO     | will attempt to kill all subprocesses of pid=10699
[2025-11-25 03:42:43] 2025-11-25 02:41:46,765 | INFO     | process IDs to be killed: [10699] (in reverse order)
[2025-11-25 03:42:43] 2025-11-25 02:41:46,951 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 03:42:43] 2025-11-25 02:41:46,952 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 03:42:43] 2025-11-25 02:41:46,954 | INFO     | did not find any defunct processes belonging to 10699
[2025-11-25 03:42:43] 2025-11-25 02:41:46,956 | INFO     | did not find any defunct processes belonging to 10699
[2025-11-25 03:42:43] 2025-11-25 02:41:47,006 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 03:42:43] 2025-11-25 02:41:47,006 | INFO     | ready for new job
[2025-11-25 03:42:43] 2025-11-25 02:41:47,006 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 03:42:43] 2025-11-25 02:41:47,012 | INFO     | ***************************************
[2025-11-25 03:42:43] 2025-11-25 02:41:47,012 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 03:42:43] 2025-11-25 02:41:47,012 | INFO     | ***************************************
[2025-11-25 03:42:43] 2025-11-25 02:41:47,012 | INFO     | 
[2025-11-25 03:42:43] 2025-11-25 02:41:47,013 | INFO     | pilot is running in a VM
[2025-11-25 03:42:43] 2025-11-25 02:41:47,013 | INFO     | architecture information:
[2025-11-25 03:42:43] 2025-11-25 02:41:47,016 | INFO     | executing command: cat /etc/os-release
[2025-11-25 03:42:43] 2025-11-25 02:41:47,230 | INFO     | cat /etc/os-release:
[2025-11-25 03:42:43] NAME="CentOS Linux"
[2025-11-25 03:42:43] VERSION="7 (Core)"
[2025-11-25 03:42:43] ID="centos"
[2025-11-25 03:42:43] ID_LIKE="rhel fedora"
[2025-11-25 03:42:43] VERSION_ID="7"
[2025-11-25 03:42:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 03:42:43] ANSI_COLOR="0;31"
[2025-11-25 03:42:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 03:42:43] HOME_URL="https://www.centos.org/"
[2025-11-25 03:42:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 03:42:43] 
[2025-11-25 03:42:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 03:42:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 03:42:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 03:42:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 03:42:43] 
[2025-11-25 03:42:43] 2025-11-25 02:41:47,230 | INFO     | ***************************************
[2025-11-25 03:42:43] 2025-11-25 02:41:47,733 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-25 03:42:43] 2025-11-25 02:41:47,985 | INFO     | sufficient remaining disk space (492898877440 B)
[2025-11-25 03:42:43] 2025-11-25 02:41:47,986 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 03:42:43] 2025-11-25 02:41:47,986 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 03:42:43] 2025-11-25 02:41:47,986 | INFO     | update_server=False
[2025-11-25 03:42:43] 2025-11-25 02:41:47,986 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 03:42:43] 2025-11-25 02:41:47,987 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:42:43] 2025-11-25 02:41:47,988 | INFO     | aborting loop
[2025-11-25 03:42:43] 2025-11-25 02:41:48,527 | INFO     | all job control threads have been joined
[2025-11-25 03:42:43] 2025-11-25 02:41:48,552 | INFO     | all payload control threads have been joined
[2025-11-25 03:42:43] 2025-11-25 02:41:48,732 | INFO     | all data control threads have been joined
[2025-11-25 03:42:43] 2025-11-25 02:41:48,819 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 03:42:43] 2025-11-25 02:41:48,993 | INFO     | [job] retrieve thread has finished
[2025-11-25 03:42:43] 2025-11-25 02:41:48,994 | INFO     | [job] job monitor thread has finished
[2025-11-25 03:42:43] 2025-11-25 02:41:49,268 | INFO     | [payload] validate_post thread has finished
[2025-11-25 03:42:43] 2025-11-25 02:41:49,417 | INFO     | [data] copytool_in thread has finished
[2025-11-25 03:42:43] 2025-11-25 02:41:49,526 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 03:42:43] 2025-11-25 02:41:49,534 | INFO     | [job] control thread has finished
[2025-11-25 03:42:43] 2025-11-25 02:41:49,546 | INFO     | [payload] failed_post thread has finished
[2025-11-25 03:42:43] 2025-11-25 02:41:49,559 | INFO     | [payload] control thread has finished
[2025-11-25 03:42:43] 2025-11-25 02:41:49,738 | INFO     | [data] control thread has finished
[2025-11-25 03:42:43] 2025-11-25 02:41:49,910 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 03:42:43] 2025-11-25 02:41:50,007 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 03:42:43] 2025-11-25 02:41:50,069 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 03:42:43] 2025-11-25 02:41:50,081 | INFO     | [job] validate thread has finished
[2025-11-25 03:42:43] 2025-11-25 02:41:50,288 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 03:42:43] 2025-11-25 02:41:50,301 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:42:43] 2025-11-25 02:41:50,826 | INFO     | [data] copytool_out thread has finished
[2025-11-25 03:42:43] 2025-11-25 02:41:51,307 | INFO     | [job] queue monitor thread has finished
[2025-11-25 03:42:43] 2025-11-25 02:41:53,535 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 03:42:43] 2025-11-25 02:42:17,376 | INFO     | PID=4052 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 03:42:43] 2025-11-25 02:42:17,376 | INFO     | .. there are 2 such processes running
[2025-11-25 03:42:43] 2025-11-25 02:42:17,376 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 03:42:43] 2025-11-25 02:42:17,376 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 03:42:43] 2025-11-25 02:42:17,377 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 03:42:43] 2025-11-25 02:42:32,645 | INFO     | [monitor] cgroup control has ended
[2025-11-25 03:42:43] 2025-11-25 02:42:33,012 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140431497361216)>', '<ExcThread(monitor, started 140430926669568)>']
[2025-11-25 03:42:43] 2025-11-25 02:42:33,470 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 03:42:43] 2025-11-25 02:42:33,471 | INFO     | [monitor] control thread has ended
[2025-11-25 03:42:43] 2025-11-25 02:42:38,038 | INFO     | all workflow threads have been joined
[2025-11-25 03:42:43] 2025-11-25 02:42:38,039 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 03:42:43] 2025-11-25 02:42:38,039 | INFO     | traces error code: 0
[2025-11-25 03:42:43] 2025-11-25 02:42:38,039 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 03:42:43] 2025-11-25 02:42:38,512 [wrapper] ==== pilot stdout END ====
[2025-11-25 03:42:43] 2025-11-25 02:42:38,572 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 03:42:43] 2025-11-25 02:42:38,658 [wrapper] pilotpid: 4052
[2025-11-25 03:42:43] 2025-11-25 02:42:38,750 [wrapper] Pilot exit status: 0
[2025-11-25 03:42:43] 2025-11-25 02:42:39,151 [wrapper] pandaids: 6893878606
[2025-11-25 03:42:43] 2025-11-25 02:42:40,278 [wrapper] cleanup supervisor_pilot 21288 4053
[2025-11-25 03:42:43] 2025-11-25 02:42:40,371 [wrapper] Test setup, not cleaning
[2025-11-25 03:42:43] 2025-11-25 02:42:40,509 [wrapper] apfmon messages muted
[2025-11-25 03:42:43] 2025-11-25 02:42:40,608 [wrapper] ==== wrapper stdout END ====
[2025-11-25 03:42:43] 2025-11-25 02:42:40,717 [wrapper] ==== wrapper stderr END ====
[2025-11-25 03:42:43]  *** Error codes and diagnostics ***
[2025-11-25 03:42:43]     "exeErrorCode": 0,
[2025-11-25 03:42:43]     "exeErrorDiag": "",
[2025-11-25 03:42:43]     "pilotErrorCode": 0,
[2025-11-25 03:42:43]     "pilotErrorDiag": "",
[2025-11-25 03:42:43]  *** Listing of results directory ***
[2025-11-25 03:42:43] total 1332288
[2025-11-25 03:42:43] -rw-r--r--. 1 boinc boinc    576529 Nov 20 19:04 pilot3.tar.gz
[2025-11-25 03:42:43] -rw-r--r--. 1 boinc boinc      5112 Nov 20 19:47 queuedata.json
[2025-11-25 03:42:43] -rwx------. 1 boinc boinc     36292 Nov 20 19:48 runpilot2-wrapper.sh
[2025-11-25 03:42:43] -rw-r--r--. 1 boinc boinc       100 Nov 24 05:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 03:42:43] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 05:45 run_atlas
[2025-11-25 03:42:43] -rw-r--r--. 1 boinc boinc       105 Nov 24 05:45 job.xml
[2025-11-25 03:42:43] -rw-r--r--. 1 boinc boinc      6393 Nov 24 05:45 init_data.xml
[2025-11-25 03:42:43] -rw-r--r--. 2 boinc boinc 408755790 Nov 24 05:45 EVNT.47493127._000806.pool.root.1
[2025-11-25 03:42:43] -rw-r--r--. 2 boinc boinc     15847 Nov 24 05:45 start_atlas.sh
[2025-11-25 03:42:43] drwxrwx--x. 2 boinc boinc        68 Nov 24 05:45 shared
[2025-11-25 03:42:43] -rw-r--r--. 2 boinc boinc    590098 Nov 24 05:45 input.tar.gz
[2025-11-25 03:42:43] -rw-r--r--. 1 boinc boinc         0 Nov 24 05:45 boinc_lockfile
[2025-11-25 03:42:43] -rw-r--r--. 1 boinc boinc      2785 Nov 24 05:45 pandaJob.out
[2025-11-25 03:42:43] -rw-------. 1 boinc boinc    989786 Nov 24 05:49 agis_schedconf.cvmfs.json
[2025-11-25 03:42:43] drwx------. 5 boinc boinc      4096 Nov 24 05:49 pilot3
[2025-11-25 03:42:43] -rw-r--r--. 1 boinc boinc       533 Nov 25 03:12 boinc_task_state.xml
[2025-11-25 03:42:43] -rw-------. 1 boinc boinc 925926229 Nov 25 03:38 HITS.47523449._008059.pool.root.1
[2025-11-25 03:42:43] -rw-------. 1 boinc boinc      1032 Nov 25 03:39 memory_monitor_summary.json
[2025-11-25 03:42:43] -rw-------. 1 boinc boinc   1516227 Nov 25 03:39 agis_ddmendpoints.agis.ALL.json
[2025-11-25 03:42:43] -rw-------. 1 boinc boinc   2391916 Nov 25 03:39 log.47523449._008059.job.log.tgz.1
[2025-11-25 03:42:43] -rw-------. 1 boinc boinc        95 Nov 25 03:41 pilot_heartbeat.json
[2025-11-25 03:42:43] -rw-------. 1 boinc boinc      8626 Nov 25 03:41 heartbeat.json
[2025-11-25 03:42:43] -rw-r--r--. 1 boinc boinc      8192 Nov 25 03:42 boinc_mmap_file
[2025-11-25 03:42:43] -rw-r--r--. 1 boinc boinc        29 Nov 25 03:42 wrapper_checkpoint.txt
[2025-11-25 03:42:43] -rw-------. 1 boinc boinc      4884 Nov 25 03:42 pilotlog.txt
[2025-11-25 03:42:43] -rw-------. 1 boinc boinc  10450294 Nov 25 03:42 log.47523449._008059.job.log.1
[2025-11-25 03:42:43] -rw-------. 1 boinc boinc       353 Nov 25 03:42 output.list
[2025-11-25 03:42:43] -rw-r--r--. 1 boinc boinc       620 Nov 25 03:42 runtime_log
[2025-11-25 03:42:43] -rw-------. 1 boinc boinc  12861440 Nov 25 03:42 result.tar.gz
[2025-11-25 03:42:43] -rw-------. 1 boinc boinc       662 Nov 25 03:42 ykmKDm4sOg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQyGKDmGlnhrm.diag
[2025-11-25 03:42:43] -rw-r--r--. 1 boinc boinc      8833 Nov 25 03:42 runtime_log.err
[2025-11-25 03:42:43] -rw-r--r--. 1 boinc boinc     21444 Nov 25 03:42 stderr.txt
[2025-11-25 03:42:43] HITS file was successfully produced:
[2025-11-25 03:42:43] -rw-------. 1 boinc boinc 925926229 Nov 25 03:38 shared/HITS.pool.root.1
[2025-11-25 03:42:43]  *** Contents of shared directory: ***
[2025-11-25 03:42:43] total 1316560
[2025-11-25 03:42:43] -rw-r--r--. 2 boinc boinc 408755790 Nov 24 05:45 ATLAS.root_0
[2025-11-25 03:42:43] -rw-r--r--. 2 boinc boinc     15847 Nov 24 05:45 start_atlas.sh
[2025-11-25 03:42:43] -rw-r--r--. 2 boinc boinc    590098 Nov 24 05:45 input.tar.gz
[2025-11-25 03:42:43] -rw-------. 1 boinc boinc 925926229 Nov 25 03:38 HITS.pool.root.1
[2025-11-25 03:42:43] -rw-------. 1 boinc boinc  12861440 Nov 25 03:42 result.tar.gz
03:42:45 (32630): run_atlas exited; CPU time 342123.003920
03:42:45 (32630): called boinc_finish(0)

</stderr_txt>
]]>

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