Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:20:08 (932480): wrapper (7.7.26015): starting
05:20:08 (932480): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 05:20:08] Arguments: --nthreads 8
[2025-11-21 05:20:08] Threads: 8
[2025-11-21 05:20:08] Checking for CVMFS
[2025-11-21 05:20:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 05:20:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 05:20:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 05:20:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 05:20:08] 2.13.2.0 34200 26387 199252 153121 1 56 22100356 40960000 4758 16776704 0 19178547 99.677 12500311 28676 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 05:20:08] CVMFS is ok
[2025-11-21 05:20:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 05:20:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 05:20:08] Further information can be found at the LHC@home message board.
[2025-11-21 05:20:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 05:20:08] Checking for apptainer binary...
[2025-11-21 05:20:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 05:20:08] Running /usr/bin/apptainer --version
[2025-11-21 05:20:08] apptainer version 1.4.4-1.el9
[2025-11-21 05:20:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 05:20:08] c-211-13.aglt2.org
[2025-11-21 05:20:08] apptainer works
[2025-11-21 05:20:08] Set ATHENA_PROC_NUMBER=8
[2025-11-21 05:20:08] Set ATHENA_CORE_NUMBER=8
[2025-11-21 05:20:08] Starting ATLAS job with PandaID=6893877271
[2025-11-21 05:20:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 08:25:50]  *** The last 200 lines of the pilot log: ***
[2025-11-22 08:25:50] 2025-11-22 13:25:00,692 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 08:25:50] 2025-11-22 13:25:02,292 | INFO     | time since job start (97483s) is within the limit (172800.0s)
[2025-11-22 08:25:50] 2025-11-22 13:25:03,227 | INFO     | monitor loop #5181: job 0:6893877271 is in state 'finished'
[2025-11-22 08:25:50] 2025-11-22 13:25:03,228 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 08:25:50] 2025-11-22 13:25:04,300 | INFO     | time since job start (97485s) is within the limit (172800.0s)
[2025-11-22 08:25:50] 2025-11-22 13:25:05,730 | INFO     | monitor loop #5182: job 0:6893877271 is in state 'finished'
[2025-11-22 08:25:50] 2025-11-22 13:25:05,731 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 08:25:50] 2025-11-22 13:25:06,307 | INFO     | time since job start (97487s) is within the limit (172800.0s)
[2025-11-22 08:25:50] 2025-11-22 13:25:06,308 | INFO     | 97489s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-22 08:25:50] 2025-11-22 13:25:08,220 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 08:25:50] 2025-11-22 13:25:08,266 | INFO     | monitor loop #5183: job 0:6893877271 is in state 'finished'
[2025-11-22 08:25:50] 2025-11-22 13:25:08,266 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 08:25:50] 2025-11-22 13:25:08,299 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2627.8785000000003
[2025-11-22 08:25:50] 2025-11-22 13:25:08,340 | INFO     | time since job start (97489s) is within the limit (172800.0s)
[2025-11-22 08:25:50] 2025-11-22 13:25:08,401 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6893877271/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 08:25:50] 2025-11-22 13:25:08,440 | INFO     | extracted standard info from prmon json
[2025-11-22 08:25:50] 2025-11-22 13:25:08,440 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 08:25:50] 2025-11-22 13:25:08,440 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 08:25:50] 2025-11-22 13:25:08,758 | INFO     | fitting pss+swap vs Time
[2025-11-22 08:25:50] 2025-11-22 13:25:08,761 | INFO     | sum of square deviations: 1263488431167.878
[2025-11-22 08:25:50] 2025-11-22 13:25:09,589 | INFO     | sum of deviations: -1053229995490.5911
[2025-11-22 08:25:50] 2025-11-22 13:25:09,589 | INFO     | mean x: 1763769133.1840951
[2025-11-22 08:25:50] 2025-11-22 13:25:09,589 | INFO     | mean y: 2947423.189104571
[2025-11-22 08:25:50] 2025-11-22 13:25:09,590 | INFO     | intersect: 1473205884.1018379
[2025-11-22 08:25:50] 2025-11-22 13:25:09,592 | INFO     | chi2: 34.252807795019756
[2025-11-22 08:25:50] 2025-11-22 13:25:09,623 | INFO     | sum of square deviations: 1251666930341.9272
[2025-11-22 08:25:50] 2025-11-22 13:25:10,350 | INFO     | sum of deviations: -377773006489.98566
[2025-11-22 08:25:50] 2025-11-22 13:25:10,350 | INFO     | mean x: 1763768980.709799
[2025-11-22 08:25:50] 2025-11-22 13:25:10,350 | INFO     | mean y: 2956135.2424623114
[2025-11-22 08:25:50] 2025-11-22 13:25:10,350 | INFO     | intersect: 535289693.35164636
[2025-11-22 08:25:50] 2025-11-22 13:25:10,352 | INFO     | chi2: 29.21945175974984
[2025-11-22 08:25:50] 2025-11-22 13:25:10,353 | INFO     | current chi2=29.21945175974984 (change=14.694725364972117 %)
[2025-11-22 08:25:50] 2025-11-22 13:25:10,353 | INFO     | right removable region: 1591
[2025-11-22 08:25:50] 2025-11-22 13:25:10,391 | INFO     | sum of square deviations: 1251657690606.3645
[2025-11-22 08:25:50] 2025-11-22 13:25:10,436 | INFO     | time since job start (97491s) is within the limit (172800.0s)
[2025-11-22 08:25:50] 2025-11-22 13:25:10,814 | INFO     | monitor loop #5184: job 0:6893877271 is in state 'finished'
[2025-11-22 08:25:50] 2025-11-22 13:25:10,815 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 08:25:50] 2025-11-22 13:25:11,058 | INFO     | sum of deviations: -1428952598734.362
[2025-11-22 08:25:50] 2025-11-22 13:25:11,058 | INFO     | mean x: 1763769285.717965
[2025-11-22 08:25:50] 2025-11-22 13:25:11,058 | INFO     | mean y: 2952262.2820351757
[2025-11-22 08:25:50] 2025-11-22 13:25:11,059 | INFO     | intersect: 2016556080.0906868
[2025-11-22 08:25:50] 2025-11-22 13:25:11,102 | INFO     | chi2: 32.517041661044644
[2025-11-22 08:25:50] 2025-11-22 13:25:11,102 | INFO     | current chi2=32.517041661044644 (change=5.067514886261343 %)
[2025-11-22 08:25:50] 2025-11-22 13:25:11,102 | INFO     | left removable region: 10
[2025-11-22 08:25:50] 2025-11-22 13:25:11,142 | INFO     | sum of square deviations: 1225901770387.7505
[2025-11-22 08:25:50] 2025-11-22 13:25:11,526 | INFO     | sum of deviations: -702827222775.6067
[2025-11-22 08:25:50] 2025-11-22 13:25:11,530 | INFO     | mean x: 1763769255.2814674
[2025-11-22 08:25:50] 2025-11-22 13:25:11,531 | INFO     | mean y: 2963870.972169513
[2025-11-22 08:25:50] 2025-11-22 13:25:11,531 | INFO     | intersect: 1014158305.3471053
[2025-11-22 08:25:50] 2025-11-22 13:25:11,533 | INFO     | chi2: 26.417659528593333
[2025-11-22 08:25:50] 2025-11-22 13:25:11,533 | INFO     | current memory leak: -0.57 B/s (using 1581 data points, chi2=26.42)
[2025-11-22 08:25:50] 2025-11-22 13:25:11,546 | INFO     | could have reported an average CPU frequency of 2640 MHz (56 samples)
[2025-11-22 08:25:50] 2025-11-22 13:25:11,547 | INFO     | ..............................
[2025-11-22 08:25:50] 2025-11-22 13:25:11,547 | INFO     | . Timing measurements:
[2025-11-22 08:25:50] 2025-11-22 13:25:11,547 | INFO     | . get job = 0 s
[2025-11-22 08:25:50] 2025-11-22 13:25:11,547 | INFO     | . initial setup = 2 s
[2025-11-22 08:25:50] 2025-11-22 13:25:11,547 | INFO     | . payload setup = 5 s
[2025-11-22 08:25:50] 2025-11-22 13:25:11,547 | INFO     | . stage-in = 0 s
[2025-11-22 08:25:50] 2025-11-22 13:25:11,547 | INFO     | . payload execution = 97401 s
[2025-11-22 08:25:50] 2025-11-22 13:25:11,547 | INFO     | . stage-out = 11 s
[2025-11-22 08:25:50] 2025-11-22 13:25:11,547 | INFO     | . log creation = 5 s
[2025-11-22 08:25:50] 2025-11-22 13:25:11,548 | INFO     | ..............................
[2025-11-22 08:25:50] 2025-11-22 13:25:11,883 | INFO     | 
[2025-11-22 08:25:50] 2025-11-22 13:25:11,883 | INFO     | job summary report
[2025-11-22 08:25:50] 2025-11-22 13:25:11,883 | INFO     | --------------------------------------------------
[2025-11-22 08:25:50] 2025-11-22 13:25:11,883 | INFO     | PanDA job id: 6893877271
[2025-11-22 08:25:50] 2025-11-22 13:25:11,884 | INFO     | task id: 47523449
[2025-11-22 08:25:50] 2025-11-22 13:25:11,884 | INFO     | errors: (none)
[2025-11-22 08:25:50] 2025-11-22 13:25:11,884 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 08:25:50] 2025-11-22 13:25:11,884 | INFO     | pilot state: finished 
[2025-11-22 08:25:50] 2025-11-22 13:25:11,884 | INFO     | transexitcode: 0
[2025-11-22 08:25:50] 2025-11-22 13:25:11,884 | INFO     | exeerrorcode: 0
[2025-11-22 08:25:50] 2025-11-22 13:25:11,884 | INFO     | exeerrordiag: 
[2025-11-22 08:25:50] 2025-11-22 13:25:11,884 | INFO     | exitcode: 0
[2025-11-22 08:25:50] 2025-11-22 13:25:11,884 | INFO     | exitmsg: OK
[2025-11-22 08:25:50] 2025-11-22 13:25:11,884 | INFO     | cpuconsumptiontime: 332656 s
[2025-11-22 08:25:50] 2025-11-22 13:25:11,885 | INFO     | nevents: 1000
[2025-11-22 08:25:50] 2025-11-22 13:25:11,885 | INFO     | neventsw: 0
[2025-11-22 08:25:50] 2025-11-22 13:25:11,885 | INFO     | pid: 946013
[2025-11-22 08:25:50] 2025-11-22 13:25:11,885 | INFO     | pgrp: 946013
[2025-11-22 08:25:50] 2025-11-22 13:25:11,885 | INFO     | corecount: 8
[2025-11-22 08:25:50] 2025-11-22 13:25:11,885 | INFO     | event service: False
[2025-11-22 08:25:50] 2025-11-22 13:25:11,885 | INFO     | sizes: {0: 2297927, 1: 2298783, 5: 2299045, 12: 2299101, 97412: 2366898, 97426: 2375892, 97431: 2376076, 97478: 2376322}
[2025-11-22 08:25:50] 2025-11-22 13:25:11,885 | INFO     | --------------------------------------------------
[2025-11-22 08:25:50] 2025-11-22 13:25:11,885 | INFO     | 
[2025-11-22 08:25:50] 2025-11-22 13:25:11,886 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-22 08:25:50] 2025-11-22 13:25:12,038 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,038 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,038 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,038 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,038 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,039 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,039 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,039 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,039 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,039 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,039 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,039 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,039 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,039 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,040 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,040 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,040 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,040 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 08:25:50] 2025-11-22 13:25:12,040 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,040 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 08:25:50] 2025-11-22 13:25:12,040 | INFO     | job 6893877271 has completed (purged errors)
[2025-11-22 08:25:50] 2025-11-22 13:25:12,040 | INFO     | overall cleanup function is called
[2025-11-22 08:25:50] 2025-11-22 13:25:12,698 | INFO     | PID=937114 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 08:25:50] 2025-11-22 13:25:12,698 | INFO     | .. there are 12 such processes running
[2025-11-22 08:25:50] 2025-11-22 13:25:13,091 | INFO     | --- collectZombieJob: --- 10, [946013]
[2025-11-22 08:25:50] 2025-11-22 13:25:13,092 | INFO     | zombie collector waiting for pid 946013
[2025-11-22 08:25:50] 2025-11-22 13:25:13,092 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 08:25:50] 2025-11-22 13:25:13,092 | INFO     | collected zombie processes
[2025-11-22 08:25:50] 2025-11-22 13:25:13,092 | INFO     | will attempt to kill all subprocesses of pid=946013
[2025-11-22 08:25:50] 2025-11-22 13:25:13,842 | INFO     | process IDs to be killed: [946013] (in reverse order)
[2025-11-22 08:25:50] 2025-11-22 13:25:14,126 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 08:25:50] 2025-11-22 13:25:14,127 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 08:25:50] 2025-11-22 13:25:14,162 | INFO     | did not find any defunct processes belonging to 946013
[2025-11-22 08:25:50] 2025-11-22 13:25:14,194 | INFO     | did not find any defunct processes belonging to 946013
[2025-11-22 08:25:50] 2025-11-22 13:25:14,232 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 08:25:50] 2025-11-22 13:25:14,233 | INFO     | ready for new job
[2025-11-22 08:25:50] 2025-11-22 13:25:14,233 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 08:25:50] 2025-11-22 13:25:14,245 | INFO     | ***************************************
[2025-11-22 08:25:50] 2025-11-22 13:25:14,245 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 08:25:50] 2025-11-22 13:25:14,245 | INFO     | ***************************************
[2025-11-22 08:25:50] 2025-11-22 13:25:14,245 | INFO     | 
[2025-11-22 08:25:50] 2025-11-22 13:25:14,252 | INFO     | architecture information:
[2025-11-22 08:25:50] 2025-11-22 13:25:14,297 | INFO     | executing command: cat /etc/os-release
[2025-11-22 08:25:50] 2025-11-22 13:25:14,399 | INFO     | cat /etc/os-release:
[2025-11-22 08:25:50] NAME="CentOS Linux"
[2025-11-22 08:25:50] VERSION="7 (Core)"
[2025-11-22 08:25:50] ID="centos"
[2025-11-22 08:25:50] ID_LIKE="rhel fedora"
[2025-11-22 08:25:50] VERSION_ID="7"
[2025-11-22 08:25:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 08:25:50] ANSI_COLOR="0;31"
[2025-11-22 08:25:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 08:25:50] HOME_URL="https://www.centos.org/"
[2025-11-22 08:25:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 08:25:50] 
[2025-11-22 08:25:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 08:25:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 08:25:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 08:25:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 08:25:50] 
[2025-11-22 08:25:50] 2025-11-22 13:25:14,399 | INFO     | ***************************************
[2025-11-22 08:25:50] 2025-11-22 13:25:14,902 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-22 08:25:50] 2025-11-22 13:25:14,958 | INFO     | sufficient remaining disk space (57732497408 B)
[2025-11-22 08:25:50] 2025-11-22 13:25:14,958 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 08:25:50] 2025-11-22 13:25:14,958 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 08:25:50] 2025-11-22 13:25:14,958 | INFO     | update_server=False
[2025-11-22 08:25:50] 2025-11-22 13:25:14,958 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 08:25:50] 2025-11-22 13:25:14,959 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 08:25:50] 2025-11-22 13:25:14,959 | INFO     | aborting loop
[2025-11-22 08:25:50] 2025-11-22 13:25:14,959 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 08:25:50] 2025-11-22 13:25:15,389 | INFO     | all job control threads have been joined
[2025-11-22 08:25:50] 2025-11-22 13:25:15,943 | INFO     | all data control threads have been joined
[2025-11-22 08:25:50] 2025-11-22 13:25:15,987 | INFO     | [job] job monitor thread has finished
[2025-11-22 08:25:50] 2025-11-22 13:25:16,002 | INFO     | [job] retrieve thread has finished
[2025-11-22 08:25:50] 2025-11-22 13:25:16,076 | INFO     | all payload control threads have been joined
[2025-11-22 08:25:50] 2025-11-22 13:25:16,160 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 08:25:50] 2025-11-22 13:25:16,395 | INFO     | [job] control thread has finished
[2025-11-22 08:25:50] 2025-11-22 13:25:16,512 | INFO     | [payload] failed_post thread has finished
[2025-11-22 08:25:50] 2025-11-22 13:25:16,564 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 08:25:50] 2025-11-22 13:25:16,876 | INFO     | [payload] validate_post thread has finished
[2025-11-22 08:25:50] 2025-11-22 13:25:16,945 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 08:25:50] 2025-11-22 13:25:16,969 | INFO     | [data] copytool_out thread has finished
[2025-11-22 08:25:50] 2025-11-22 13:25:16,976 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 08:25:50] 2025-11-22 13:25:16,977 | INFO     | [data] control thread has finished
[2025-11-22 08:25:50] 2025-11-22 13:25:17,019 | INFO     | [data] copytool_in thread has finished
[2025-11-22 08:25:50] 2025-11-22 13:25:17,125 | INFO     | [payload] control thread has finished
[2025-11-22 08:25:50] 2025-11-22 13:25:17,519 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 08:25:50] 2025-11-22 13:25:17,529 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 08:25:50] 2025-11-22 13:25:17,537 | INFO     | [job] validate thread has finished
[2025-11-22 08:25:50] 2025-11-22 13:25:17,993 | INFO     | [job] queue monitor thread has finished
[2025-11-22 08:25:50] 2025-11-22 13:25:20,629 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 08:25:50] 2025-11-22 13:25:36,198 | INFO     | [monitor] cgroup control has ended
[2025-11-22 08:25:50] 2025-11-22 13:25:37,600 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139875967444800)>', '<ExcThread(monitor, started 139875323991808)>']
[2025-11-22 08:25:50] 2025-11-22 13:25:42,625 | INFO     | all workflow threads have been joined
[2025-11-22 08:25:50] 2025-11-22 13:25:42,626 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 08:25:50] 2025-11-22 13:25:42,626 | INFO     | traces error code: 0
[2025-11-22 08:25:50] 2025-11-22 13:25:42,627 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 08:25:50] 2025-11-22 13:25:47,586 | INFO     | PID=937114 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 08:25:50] 2025-11-22 13:25:47,587 | INFO     | .. there are 12 such processes running
[2025-11-22 08:25:50] 2025-11-22 13:25:47,588 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 08:25:50] 2025-11-22 13:25:47,589 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 08:25:50] 2025-11-22 13:25:47,589 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 08:25:50] 2025-11-22 13:25:47,589 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 08:25:50] 2025-11-22 13:25:47,589 | INFO     | [monitor] control thread has ended
[2025-11-22 08:25:50] 2025-11-22 13:25:48,882 [wrapper] ==== pilot stdout END ====
[2025-11-22 08:25:50] 2025-11-22 13:25:48,941 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 08:25:50] 2025-11-22 13:25:48,959 [wrapper] pilotpid: 937114
[2025-11-22 08:25:50] 2025-11-22 13:25:48,984 [wrapper] Pilot exit status: 0
[2025-11-22 08:25:50] 2025-11-22 13:25:49,109 [wrapper] pandaids: 6893877271
[2025-11-22 08:25:50] 2025-11-22 13:25:49,210 [wrapper] cleanup supervisor_pilot 3584806 937115
[2025-11-22 08:25:50] 2025-11-22 13:25:49,236 [wrapper] Test setup, not cleaning
[2025-11-22 08:25:50] 2025-11-22 13:25:49,294 [wrapper] apfmon messages muted
[2025-11-22 08:25:50] 2025-11-22 13:25:49,338 [wrapper] ==== wrapper stdout END ====
[2025-11-22 08:25:50] 2025-11-22 13:25:49,439 [wrapper] ==== wrapper stderr END ====
[2025-11-22 08:25:50]  *** Error codes and diagnostics ***
[2025-11-22 08:25:50]     "exeErrorCode": 0,
[2025-11-22 08:25:50]     "exeErrorDiag": "",
[2025-11-22 08:25:50]     "pilotErrorCode": 0,
[2025-11-22 08:25:50]     "pilotErrorDiag": "",
[2025-11-22 08:25:50]  *** Listing of results directory ***
[2025-11-22 08:25:50] total 1336552
[2025-11-22 08:25:50] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 13:04 pilot3.tar.gz
[2025-11-22 08:25:50] -rwx------. 1 boincer umatlas     36292 Nov 20 13:31 runpilot2-wrapper.sh
[2025-11-22 08:25:50] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 13:31 queuedata.json
[2025-11-22 08:25:50] -rw-r--r--. 1 boincer umatlas       100 Nov 21 05:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 08:25:50] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 05:20 run_atlas
[2025-11-22 08:25:50] -rw-r--r--. 1 boincer umatlas       105 Nov 21 05:20 job.xml
[2025-11-22 08:25:50] -rw-r--r--. 2 boincer umatlas 410990043 Nov 21 05:20 EVNT.47493127._000796.pool.root.1
[2025-11-22 08:25:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 05:20 start_atlas.sh
[2025-11-22 08:25:50] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 05:20 shared
[2025-11-22 08:25:50] -rw-r--r--. 2 boincer umatlas    590102 Nov 21 05:20 input.tar.gz
[2025-11-22 08:25:50] -rw-r--r--. 1 boincer umatlas         0 Nov 21 05:20 boinc_lockfile
[2025-11-22 08:25:50] -rw-r--r--. 1 boincer umatlas      2784 Nov 21 05:20 pandaJob.out
[2025-11-22 08:25:50] -rw-------. 1 boincer umatlas        57 Nov 21 05:20 setup.sh.local
[2025-11-22 08:25:50] -rw-------. 1 boincer umatlas    989817 Nov 21 05:20 agis_schedconf.cvmfs.json
[2025-11-22 08:25:50] drwx------. 5 boincer umatlas      4096 Nov 21 05:20 pilot3
[2025-11-22 08:25:50] -rw-r--r--. 1 boincer umatlas       533 Nov 22 07:30 boinc_task_state.xml
[2025-11-22 08:25:50] -rw-------. 1 boincer umatlas 926251842 Nov 22 08:03 HITS.47523449._007954.pool.root.1
[2025-11-22 08:25:50] -rw-r--r--. 1 boincer umatlas      6615 Nov 22 08:18 init_data.xml
[2025-11-22 08:25:50] -rw-------. 1 boincer umatlas      1058 Nov 22 08:24 memory_monitor_summary.json
[2025-11-22 08:25:50] -rw-------. 1 boincer umatlas   1526164 Nov 22 08:24 agis_ddmendpoints.agis.ALL.json
[2025-11-22 08:25:50] -rw-------. 1 boincer umatlas   2482015 Nov 22 08:24 log.47523449._007954.job.log.tgz.1
[2025-11-22 08:25:50] -rw-------. 1 boincer umatlas      8636 Nov 22 08:25 heartbeat.json
[2025-11-22 08:25:50] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 08:25 boinc_mmap_file
[2025-11-22 08:25:50] -rw-r--r--. 1 boincer umatlas        29 Nov 22 08:25 wrapper_checkpoint.txt
[2025-11-22 08:25:50] -rw-------. 1 boincer umatlas       822 Nov 22 08:25 pilotlog.txt
[2025-11-22 08:25:50] -rw-------. 1 boincer umatlas        95 Nov 22 08:25 pilot_heartbeat.json
[2025-11-22 08:25:50] -rw-------. 1 boincer umatlas  11249858 Nov 22 08:25 log.47523449._007954.job.log.1
[2025-11-22 08:25:50] -rw-------. 1 boincer umatlas       353 Nov 22 08:25 output.list
[2025-11-22 08:25:50] -rw-r--r--. 1 boincer umatlas       620 Nov 22 08:25 runtime_log
[2025-11-22 08:25:50] -rw-------. 1 boincer umatlas  13752320 Nov 22 08:25 result.tar.gz
[2025-11-22 08:25:50] -rw-r--r--. 1 boincer umatlas      9343 Nov 22 08:25 runtime_log.err
[2025-11-22 08:25:50] -rw-------. 1 boincer umatlas       661 Nov 22 08:25 CimLDmscOg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxOIKDmQvzCLm.diag
[2025-11-22 08:25:50] -rw-r--r--. 1 boincer umatlas     21864 Nov 22 08:25 stderr.txt
[2025-11-22 08:25:50] HITS file was successfully produced:
[2025-11-22 08:25:50] -rw-------. 1 boincer umatlas 926251842 Nov 22 08:03 shared/HITS.pool.root.1
[2025-11-22 08:25:50]  *** Contents of shared directory: ***
[2025-11-22 08:25:50] total 1319940
[2025-11-22 08:25:50] -rw-r--r--. 2 boincer umatlas 410990043 Nov 21 05:20 ATLAS.root_0
[2025-11-22 08:25:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 05:20 start_atlas.sh
[2025-11-22 08:25:50] -rw-r--r--. 2 boincer umatlas    590102 Nov 21 05:20 input.tar.gz
[2025-11-22 08:25:50] -rw-------. 1 boincer umatlas 926251842 Nov 22 08:03 HITS.pool.root.1
[2025-11-22 08:25:50] -rw-------. 1 boincer umatlas  13752320 Nov 22 08:25 result.tar.gz
08:25:51 (932480): run_atlas exited; CPU time 334934.668950
08:25:51 (932480): called boinc_finish(0)

</stderr_txt>
]]>

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