Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:20:06 (367924): wrapper (7.7.26015): starting
09:20:06 (367924): wrapper: running run_atlas (--nthreads 10)
[2025-11-21 09:20:06] Arguments: --nthreads 10
[2025-11-21 09:20:06] Threads: 10
[2025-11-21 09:20:06] Checking for CVMFS
[2025-11-21 09:20:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 09:20:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 09:20:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 09:20:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 09:20:06] 2.13.3.0 12601 22962 355660 153131 0 169 18764786 32935936 13145 16776704 0 106877238 99.471 134862042 33565 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 09:20:06] CVMFS is ok
[2025-11-21 09:20:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 09:20:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 09:20:06] Further information can be found at the LHC@home message board.
[2025-11-21 09:20:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 09:20:06] Checking for apptainer binary...
[2025-11-21 09:20:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 09:20:06] Running /usr/bin/apptainer --version
[2025-11-21 09:20:06] apptainer version 1.4.4-1.el9
[2025-11-21 09:20:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 09:20:06] c6-12-27-4.aglt2.org
[2025-11-21 09:20:06] apptainer works
[2025-11-21 09:20:06] Set ATHENA_PROC_NUMBER=10
[2025-11-21 09:20:06] Set ATHENA_CORE_NUMBER=10
[2025-11-21 09:20:06] Starting ATLAS job with PandaID=6892523724
[2025-11-21 09:20:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:20:51 (1061766): wrapper (7.7.26015): starting
04:20:51 (1061766): wrapper: running run_atlas (--nthreads 10)
[2025-11-22 04:20:51] Arguments: --nthreads 10
[2025-11-22 04:20:51] Threads: 10
[2025-11-22 04:20:51] This job has been restarted, cleaning up previous attempt
[2025-11-22 04:20:52] Checking for CVMFS
[2025-11-22 04:20:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 04:20:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 04:20:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 04:20:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 04:20:52] 2.13.3.0 12601 24103 362416 153166 1 118 21343901 32935936 28231 16776704 0 114283150 99.483 140935481 33348 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 04:20:52] CVMFS is ok
[2025-11-22 04:20:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 04:20:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 04:20:52] Further information can be found at the LHC@home message board.
[2025-11-22 04:20:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 04:20:52] Checking for apptainer binary...
[2025-11-22 04:20:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 04:20:52] Running /usr/bin/apptainer --version
[2025-11-22 04:20:52] apptainer version 1.4.4-1.el9
[2025-11-22 04:20:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 04:20:52] c6-12-27-4.aglt2.org
[2025-11-22 04:20:52] apptainer works
[2025-11-22 04:20:52] Set ATHENA_PROC_NUMBER=10
[2025-11-22 04:20:52] Set ATHENA_CORE_NUMBER=10
[2025-11-22 04:20:52] Starting ATLAS job with PandaID=6892523724
[2025-11-22 04:20:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:28:00 (1928114): wrapper (7.7.26015): starting
07:28:00 (1928114): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 07:28:00] Arguments: --nthreads 8
[2025-11-22 07:28:00] Threads: 8
[2025-11-22 07:28:00] This job has been restarted, cleaning up previous attempt
[2025-11-22 07:28:00] Checking for CVMFS
[2025-11-22 07:28:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 07:28:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 07:28:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 07:28:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 07:28:01] 2.13.3.0 12601 24290 367608 153172 3 436 25958811 32935936 29013 16776704 0 115793227 99.485 142155236 33288 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 07:28:01] CVMFS is ok
[2025-11-22 07:28:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 07:28:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 07:28:01] Further information can be found at the LHC@home message board.
[2025-11-22 07:28:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 07:28:01] Checking for apptainer binary...
[2025-11-22 07:28:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 07:28:01] Running /usr/bin/apptainer --version
[2025-11-22 07:28:01] apptainer version 1.4.4-1.el9
[2025-11-22 07:28:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 07:28:01] c6-12-27-4.aglt2.org
[2025-11-22 07:28:01] apptainer works
[2025-11-22 07:28:01] Set ATHENA_PROC_NUMBER=8
[2025-11-22 07:28:01] Set ATHENA_CORE_NUMBER=8
[2025-11-22 07:28:01] Starting ATLAS job with PandaID=6892523724
[2025-11-22 07:28:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 02:00:18]  *** The last 200 lines of the pilot log: ***
[2025-11-24 02:00:18] 2025-11-24 06:59:21,493 | INFO     | time since job start (153063s) is within the limit (172800.0s)
[2025-11-24 02:00:18] 2025-11-24 06:59:23,435 | INFO     | monitor loop #8800: job 0:6892523724 is in state 'finished'
[2025-11-24 02:00:18] 2025-11-24 06:59:23,435 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:00:18] 2025-11-24 06:59:23,502 | INFO     | time since job start (153065s) is within the limit (172800.0s)
[2025-11-24 02:00:18] 2025-11-24 06:59:25,509 | INFO     | time since job start (153067s) is within the limit (172800.0s)
[2025-11-24 02:00:18] 2025-11-24 06:59:25,940 | INFO     | monitor loop #8801: job 0:6892523724 is in state 'finished'
[2025-11-24 02:00:18] 2025-11-24 06:59:25,940 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:00:18] 2025-11-24 06:59:27,516 | INFO     | time since job start (153069s) is within the limit (172800.0s)
[2025-11-24 02:00:18] 2025-11-24 06:59:28,445 | INFO     | monitor loop #8802: job 0:6892523724 is in state 'finished'
[2025-11-24 02:00:18] 2025-11-24 06:59:28,445 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:00:18] 2025-11-24 06:59:29,523 | INFO     | time since job start (153071s) is within the limit (172800.0s)
[2025-11-24 02:00:18] 2025-11-24 06:59:30,950 | INFO     | monitor loop #8803: job 0:6892523724 is in state 'finished'
[2025-11-24 02:00:18] 2025-11-24 06:59:30,950 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:00:18] 2025-11-24 06:59:31,232 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 02:00:18] 2025-11-24 06:59:31,259 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2686.2985000000003
[2025-11-24 02:00:18] 2025-11-24 06:59:31,292 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6892523724/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 02:00:18] 2025-11-24 06:59:31,297 | INFO     | extracted standard info from prmon json
[2025-11-24 02:00:18] 2025-11-24 06:59:31,297 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 02:00:18] 2025-11-24 06:59:31,297 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 02:00:18] 2025-11-24 06:59:31,377 | INFO     | fitting pss+swap vs Time
[2025-11-24 02:00:18] 2025-11-24 06:59:31,381 | INFO     | sum of square deviations: 4891317542979.609
[2025-11-24 02:00:18] 2025-11-24 06:59:31,539 | INFO     | time since job start (153073s) is within the limit (172800.0s)
[2025-11-24 02:00:18] 2025-11-24 06:59:31,661 | INFO     | sum of deviations: 11073708202278.688
[2025-11-24 02:00:18] 2025-11-24 06:59:31,662 | INFO     | mean x: 1763891012.2575758
[2025-11-24 02:00:18] 2025-11-24 06:59:31,662 | INFO     | mean y: 2920883.7001594896
[2025-11-24 02:00:18] 2025-11-24 06:59:31,662 | INFO     | intersect: -3990443725.881844
[2025-11-24 02:00:18] 2025-11-24 06:59:31,665 | INFO     | chi2: 15.336904286547865
[2025-11-24 02:00:18] 2025-11-24 06:59:31,669 | INFO     | sum of square deviations: 4862122046513.878
[2025-11-24 02:00:18] 2025-11-24 06:59:31,954 | INFO     | sum of deviations: 11948861754204.057
[2025-11-24 02:00:18] 2025-11-24 06:59:31,954 | INFO     | mean x: 1763890859.765082
[2025-11-24 02:00:18] 2025-11-24 06:59:31,954 | INFO     | mean y: 2925454.41669996
[2025-11-24 02:00:18] 2025-11-24 06:59:31,955 | INFO     | intersect: -4331907738.005702
[2025-11-24 02:00:18] 2025-11-24 06:59:31,968 | INFO     | chi2: 12.009343597802989
[2025-11-24 02:00:18] 2025-11-24 06:59:31,968 | INFO     | current chi2=12.009343597802989 (change=21.696429909023486 %)
[2025-11-24 02:00:18] 2025-11-24 06:59:31,968 | INFO     | right removable region: 2502
[2025-11-24 02:00:18] 2025-11-24 06:59:31,992 | INFO     | sum of square deviations: 4862116450624.399
[2025-11-24 02:00:18] 2025-11-24 06:59:32,771 | INFO     | sum of deviations: 10322892011391.533
[2025-11-24 02:00:18] 2025-11-24 06:59:32,771 | INFO     | mean x: 1763891164.7646823
[2025-11-24 02:00:18] 2025-11-24 06:59:32,771 | INFO     | mean y: 2924803.202956452
[2025-11-24 02:00:18] 2025-11-24 06:59:32,771 | INFO     | intersect: -3742040624.635591
[2025-11-24 02:00:18] 2025-11-24 06:59:32,829 | INFO     | chi2: 12.850027683642118
[2025-11-24 02:00:18] 2025-11-24 06:59:32,829 | INFO     | current chi2=12.850027683642118 (change=16.214984174394363 %)
[2025-11-24 02:00:18] 2025-11-24 06:59:32,829 | INFO     | left removable region: 10
[2025-11-24 02:00:18] 2025-11-24 06:59:32,832 | INFO     | sum of square deviations: 4798294042484.174
[2025-11-24 02:00:18] 2025-11-24 06:59:33,579 | INFO     | time since job start (153075s) is within the limit (172800.0s)
[2025-11-24 02:00:18] 2025-11-24 06:59:33,602 | INFO     | monitor loop #8804: job 0:6892523724 is in state 'finished'
[2025-11-24 02:00:18] 2025-11-24 06:59:33,602 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:00:18] 2025-11-24 06:59:33,947 | INFO     | sum of deviations: 11127697246884.154
[2025-11-24 02:00:18] 2025-11-24 06:59:33,947 | INFO     | mean x: 1763891134.2708669
[2025-11-24 02:00:18] 2025-11-24 06:59:33,948 | INFO     | mean y: 2931572.309390048
[2025-11-24 02:00:18] 2025-11-24 06:59:33,948 | INFO     | intersect: -4087698627.682992
[2025-11-24 02:00:18] 2025-11-24 06:59:33,974 | INFO     | chi2: 8.745448087243947
[2025-11-24 02:00:18] 2025-11-24 06:59:33,974 | INFO     | current memory leak: 2.32 B/s (using 2492 data points, chi2=8.75)
[2025-11-24 02:00:18] 2025-11-24 06:59:33,977 | INFO     | could have reported an average CPU frequency of 2603 MHz (87 samples)
[2025-11-24 02:00:18] 2025-11-24 06:59:33,977 | INFO     | ..............................
[2025-11-24 02:00:18] 2025-11-24 06:59:33,977 | INFO     | . Timing measurements:
[2025-11-24 02:00:18] 2025-11-24 06:59:33,977 | INFO     | . get job = 0 s
[2025-11-24 02:00:18] 2025-11-24 06:59:33,978 | INFO     | . initial setup = 2 s
[2025-11-24 02:00:18] 2025-11-24 06:59:33,978 | INFO     | . payload setup = 10 s
[2025-11-24 02:00:18] 2025-11-24 06:59:33,978 | INFO     | . stage-in = 0 s
[2025-11-24 02:00:18] 2025-11-24 06:59:34,002 | INFO     | . payload execution = 152985 s
[2025-11-24 02:00:18] 2025-11-24 06:59:34,002 | INFO     | . stage-out = 20 s
[2025-11-24 02:00:18] 2025-11-24 06:59:34,002 | INFO     | . log creation = 9 s
[2025-11-24 02:00:18] 2025-11-24 06:59:34,002 | INFO     | ..............................
[2025-11-24 02:00:18] 2025-11-24 06:59:34,925 | INFO     | 
[2025-11-24 02:00:18] 2025-11-24 06:59:34,925 | INFO     | job summary report
[2025-11-24 02:00:18] 2025-11-24 06:59:34,926 | INFO     | --------------------------------------------------
[2025-11-24 02:00:18] 2025-11-24 06:59:34,926 | INFO     | PanDA job id: 6892523724
[2025-11-24 02:00:18] 2025-11-24 06:59:34,926 | INFO     | task id: 47493029
[2025-11-24 02:00:18] 2025-11-24 06:59:34,926 | INFO     | errors: (none)
[2025-11-24 02:00:18] 2025-11-24 06:59:34,926 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 02:00:18] 2025-11-24 06:59:34,926 | INFO     | pilot state: finished 
[2025-11-24 02:00:18] 2025-11-24 06:59:34,926 | INFO     | transexitcode: 0
[2025-11-24 02:00:18] 2025-11-24 06:59:34,926 | INFO     | exeerrorcode: 0
[2025-11-24 02:00:18] 2025-11-24 06:59:34,926 | INFO     | exeerrordiag: 
[2025-11-24 02:00:18] 2025-11-24 06:59:34,926 | INFO     | exitcode: 0
[2025-11-24 02:00:18] 2025-11-24 06:59:34,926 | INFO     | exitmsg: OK
[2025-11-24 02:00:18] 2025-11-24 06:59:34,926 | INFO     | cpuconsumptiontime: 292680 s
[2025-11-24 02:00:18] 2025-11-24 06:59:34,927 | INFO     | nevents: 1000
[2025-11-24 02:00:18] 2025-11-24 06:59:34,927 | INFO     | neventsw: 0
[2025-11-24 02:00:18] 2025-11-24 06:59:34,927 | INFO     | pid: 2001468
[2025-11-24 02:00:18] 2025-11-24 06:59:34,927 | INFO     | pgrp: 2001468
[2025-11-24 02:00:18] 2025-11-24 06:59:34,927 | INFO     | corecount: 8
[2025-11-24 02:00:18] 2025-11-24 06:59:34,927 | INFO     | event service: False
[2025-11-24 02:00:18] 2025-11-24 06:59:34,927 | INFO     | sizes: {0: 2298792, 1: 2298792, 7: 2299082, 11: 2299110, 153000: 2393949, 153021: 2402971, 153023: 2403155, 153058: 2403401}
[2025-11-24 02:00:18] 2025-11-24 06:59:34,927 | INFO     | --------------------------------------------------
[2025-11-24 02:00:18] 2025-11-24 06:59:34,927 | INFO     | 
[2025-11-24 02:00:18] 2025-11-24 06:59:34,927 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-24 02:00:18] 2025-11-24 06:59:35,077 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,078 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,078 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,078 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,078 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,078 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,078 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,078 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,078 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,078 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,079 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,079 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,079 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,079 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,079 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,079 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,079 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,079 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 02:00:18] 2025-11-24 06:59:35,079 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,079 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 02:00:18] 2025-11-24 06:59:35,080 | INFO     | job 6892523724 has completed (purged errors)
[2025-11-24 02:00:18] 2025-11-24 06:59:35,080 | INFO     | overall cleanup function is called
[2025-11-24 02:00:18] 2025-11-24 06:59:36,111 | INFO     | --- collectZombieJob: --- 10, [2001468]
[2025-11-24 02:00:18] 2025-11-24 06:59:36,111 | INFO     | zombie collector waiting for pid 2001468
[2025-11-24 02:00:18] 2025-11-24 06:59:36,111 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 02:00:18] 2025-11-24 06:59:36,111 | INFO     | collected zombie processes
[2025-11-24 02:00:18] 2025-11-24 06:59:36,112 | INFO     | will attempt to kill all subprocesses of pid=2001468
[2025-11-24 02:00:18] 2025-11-24 06:59:37,542 | INFO     | process IDs to be killed: [2001468] (in reverse order)
[2025-11-24 02:00:18] 2025-11-24 06:59:38,080 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 02:00:18] 2025-11-24 06:59:38,080 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 02:00:18] 2025-11-24 06:59:38,151 | INFO     | did not find any defunct processes belonging to 2001468
[2025-11-24 02:00:18] 2025-11-24 06:59:38,192 | INFO     | did not find any defunct processes belonging to 2001468
[2025-11-24 02:00:18] 2025-11-24 06:59:38,193 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 02:00:18] 2025-11-24 06:59:38,194 | INFO     | ready for new job
[2025-11-24 02:00:18] 2025-11-24 06:59:38,194 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 02:00:18] 2025-11-24 06:59:38,211 | INFO     | ***************************************
[2025-11-24 02:00:18] 2025-11-24 06:59:38,212 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 02:00:18] 2025-11-24 06:59:38,212 | INFO     | ***************************************
[2025-11-24 02:00:18] 2025-11-24 06:59:38,212 | INFO     | 
[2025-11-24 02:00:18] 2025-11-24 06:59:38,226 | INFO     | architecture information:
[2025-11-24 02:00:18] 2025-11-24 06:59:38,226 | INFO     | executing command: cat /etc/os-release
[2025-11-24 02:00:18] 2025-11-24 06:59:38,308 | INFO     | cat /etc/os-release:
[2025-11-24 02:00:18] NAME="CentOS Linux"
[2025-11-24 02:00:18] VERSION="7 (Core)"
[2025-11-24 02:00:18] ID="centos"
[2025-11-24 02:00:18] ID_LIKE="rhel fedora"
[2025-11-24 02:00:18] VERSION_ID="7"
[2025-11-24 02:00:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 02:00:18] ANSI_COLOR="0;31"
[2025-11-24 02:00:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 02:00:18] HOME_URL="https://www.centos.org/"
[2025-11-24 02:00:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 02:00:18] 
[2025-11-24 02:00:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 02:00:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 02:00:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 02:00:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 02:00:18] 
[2025-11-24 02:00:18] 2025-11-24 06:59:38,309 | INFO     | ***************************************
[2025-11-24 02:00:18] 2025-11-24 06:59:38,812 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-24 02:00:18] 2025-11-24 06:59:38,857 | INFO     | sufficient remaining disk space (83483426816 B)
[2025-11-24 02:00:18] 2025-11-24 06:59:38,857 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 02:00:18] 2025-11-24 06:59:38,857 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 02:00:18] 2025-11-24 06:59:38,857 | INFO     | update_server=False
[2025-11-24 02:00:18] 2025-11-24 06:59:38,857 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 02:00:18] 2025-11-24 06:59:38,858 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 02:00:18] 2025-11-24 06:59:38,858 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 02:00:18] 2025-11-24 06:59:38,941 | INFO     | all data control threads have been joined
[2025-11-24 02:00:18] 2025-11-24 06:59:39,153 | INFO     | all payload control threads have been joined
[2025-11-24 02:00:18] 2025-11-24 06:59:39,700 | INFO     | all job control threads have been joined
[2025-11-24 02:00:18] 2025-11-24 06:59:39,726 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:00:18] 2025-11-24 06:59:39,726 | INFO     | aborting loop
[2025-11-24 02:00:18] 2025-11-24 06:59:39,798 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:00:18] 2025-11-24 06:59:39,863 | INFO     | [job] retrieve thread has finished
[2025-11-24 02:00:18] 2025-11-24 06:59:39,950 | INFO     | [data] control thread has finished
[2025-11-24 02:00:18] 2025-11-24 06:59:39,951 | INFO     | [job] validate thread has finished
[2025-11-24 02:00:18] 2025-11-24 06:59:39,951 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 02:00:18] 2025-11-24 06:59:40,051 | INFO     | [data] copytool_in thread has finished
[2025-11-24 02:00:18] 2025-11-24 06:59:40,155 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 02:00:18] 2025-11-24 06:59:40,158 | INFO     | [payload] control thread has finished
[2025-11-24 02:00:18] 2025-11-24 06:59:40,706 | INFO     | [job] control thread has finished
[2025-11-24 02:00:18] 2025-11-24 06:59:40,731 | INFO     | [job] job monitor thread has finished
[2025-11-24 02:00:18] 2025-11-24 06:59:40,804 | INFO     | [job] queue monitor thread has finished
[2025-11-24 02:00:18] 2025-11-24 06:59:40,852 | INFO     | [payload] failed_post thread has finished
[2025-11-24 02:00:18] 2025-11-24 06:59:40,873 | INFO     | [data] copytool_out thread has finished
[2025-11-24 02:00:18] 2025-11-24 06:59:40,948 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 02:00:18] 2025-11-24 06:59:40,949 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 02:00:18] 2025-11-24 06:59:40,991 | INFO     | [payload] validate_post thread has finished
[2025-11-24 02:00:18] 2025-11-24 06:59:42,869 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 02:00:18] 2025-11-24 06:59:53,361 | INFO     | [monitor] cgroup control has ended
[2025-11-24 02:00:18] 2025-11-24 06:59:53,393 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140031411201856)>', '<ExcThread(monitor, started 140030555186944)>']
[2025-11-24 02:00:18] 2025-11-24 06:59:58,419 | INFO     | all workflow threads have been joined
[2025-11-24 02:00:18] 2025-11-24 06:59:58,420 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 02:00:18] 2025-11-24 06:59:58,421 | INFO     | traces error code: 0
[2025-11-24 02:00:18] 2025-11-24 06:59:58,421 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 02:00:18] 2025-11-24 07:00:16,593 | INFO     | PID=1954270 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 02:00:18] 2025-11-24 07:00:16,593 | INFO     | .. there are 38 such processes running
[2025-11-24 02:00:18] 2025-11-24 07:00:16,594 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 02:00:18] 2025-11-24 07:00:16,594 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 02:00:18] 2025-11-24 07:00:16,594 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 02:00:18] 2025-11-24 07:00:16,594 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 02:00:18] 2025-11-24 07:00:16,594 | INFO     | [monitor] control thread has ended
[2025-11-24 02:00:18] 2025-11-24 07:00:16,823 [wrapper] ==== pilot stdout END ====
[2025-11-24 02:00:18] 2025-11-24 07:00:16,844 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 02:00:18] 2025-11-24 07:00:16,862 [wrapper] pilotpid: 1954270
[2025-11-24 02:00:18] 2025-11-24 07:00:16,879 [wrapper] Pilot exit status: 0
[2025-11-24 02:00:18] 2025-11-24 07:00:16,955 [wrapper] pandaids: 6892523724 6892523724 6892523724
[2025-11-24 02:00:18] 2025-11-24 07:00:17,611 [wrapper] cleanup supervisor_pilot 2264425 1954271
[2025-11-24 02:00:18] 2025-11-24 07:00:17,637 [wrapper] Test setup, not cleaning
[2025-11-24 02:00:18] 2025-11-24 07:00:17,676 [wrapper] apfmon messages muted
[2025-11-24 02:00:18] 2025-11-24 07:00:17,685 [wrapper] ==== wrapper stdout END ====
[2025-11-24 02:00:18] 2025-11-24 07:00:17,688 [wrapper] ==== wrapper stderr END ====
[2025-11-24 02:00:18]  *** Error codes and diagnostics ***
[2025-11-24 02:00:18]     "exeErrorCode": 0,
[2025-11-24 02:00:18]     "exeErrorDiag": "",
[2025-11-24 02:00:18]     "pilotErrorCode": 0,
[2025-11-24 02:00:18]     "pilotErrorDiag": "",
[2025-11-24 02:00:18]  *** Listing of results directory ***
[2025-11-24 02:00:18] total 1748080
[2025-11-24 02:00:18] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 02:00:18] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 02:00 pilot3.tar.gz
[2025-11-24 02:00:18] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 02:07 queuedata.json
[2025-11-24 02:00:18] -rwx------. 1 boincer umatlas     36292 Nov 19 02:08 runpilot2-wrapper.sh
[2025-11-24 02:00:18] -rw-r--r--. 1 boincer umatlas       100 Nov 21 09:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 02:00:18] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 09:20 run_atlas
[2025-11-24 02:00:18] -rw-r--r--. 1 boincer umatlas       105 Nov 21 09:20 job.xml
[2025-11-24 02:00:18] -rw-r--r--. 3 boincer umatlas 408967145 Nov 21 09:20 EVNT.47493027._000080.pool.root.1
[2025-11-24 02:00:18] -rw-r--r--. 3 boincer umatlas 408967145 Nov 21 09:20 ATLAS.root_0
[2025-11-24 02:00:18] -rw-r--r--. 2 boincer umatlas    590097 Nov 21 09:20 input.tar.gz
[2025-11-24 02:00:18] -rw-r--r--. 2 boincer umatlas     15120 Nov 21 09:20 start_atlas.sh
[2025-11-24 02:00:18] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 09:20 shared
[2025-11-24 02:00:18] -rw-r--r--. 1 boincer umatlas         0 Nov 21 09:20 boinc_lockfile
[2025-11-24 02:00:18] -rw-r--r--. 1 boincer umatlas      2771 Nov 22 07:28 pandaJob.out
[2025-11-24 02:00:18] -rw-------. 1 boincer umatlas    989768 Nov 22 07:28 agis_schedconf.cvmfs.json
[2025-11-24 02:00:18] -rw-r--r--. 1 boincer umatlas       534 Nov 24 01:29 boinc_task_state.xml
[2025-11-24 02:00:18] -rw-r--r--. 1 boincer umatlas      6882 Nov 24 01:54 init_data.xml
[2025-11-24 02:00:18] -rw-------. 1 boincer umatlas 924182908 Nov 24 01:56 HITS.47493029._000756.pool.root.1
[2025-11-24 02:00:18] -rw-------. 1 boincer umatlas      1071 Nov 24 01:58 memory_monitor_summary.json
[2025-11-24 02:00:18] -rw-------. 1 boincer umatlas   1526164 Nov 24 01:58 agis_ddmendpoints.agis.ALL.json
[2025-11-24 02:00:18] -rw-------. 1 boincer umatlas   3198380 Nov 24 01:58 log.47493029._000756.job.log.tgz.1
[2025-11-24 02:00:18] -rw-------. 1 boincer umatlas      8645 Nov 24 01:59 heartbeat.json
[2025-11-24 02:00:18] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 02:00 boinc_mmap_file
[2025-11-24 02:00:18] -rw-r--r--. 1 boincer umatlas        30 Nov 24 02:00 wrapper_checkpoint.txt
[2025-11-24 02:00:18] -rw-------. 1 boincer umatlas        96 Nov 24 02:00 pilot_heartbeat.json
[2025-11-24 02:00:18] -rw-------. 1 boincer umatlas       823 Nov 24 02:00 pilotlog.txt
[2025-11-24 02:00:18] -rw-------. 1 boincer umatlas  18795779 Nov 24 02:00 log.47493029._000756.job.log.1
[2025-11-24 02:00:18] -rw-------. 1 boincer umatlas       353 Nov 24 02:00 output.list
[2025-11-24 02:00:18] -rw-r--r--. 1 boincer umatlas       620 Nov 24 02:00 runtime_log
[2025-11-24 02:00:18] -rw-------. 1 boincer umatlas  22016000 Nov 24 02:00 result.tar.gz
[2025-11-24 02:00:18] -rw-r--r--. 1 boincer umatlas      8800 Nov 24 02:00 runtime_log.err
[2025-11-24 02:00:18] -rw-------. 1 boincer umatlas       920 Nov 24 02:00 DGSLDmJUrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6sFKDmI8zSDo.diag
[2025-11-24 02:00:18] -rw-r--r--. 1 boincer umatlas     26137 Nov 24 02:00 stderr.txt
[2025-11-24 02:00:18] HITS file was successfully produced:
[2025-11-24 02:00:18] -rw-------. 1 boincer umatlas 924182908 Nov 24 01:56 shared/HITS.pool.root.1
[2025-11-24 02:00:18]  *** Contents of shared directory: ***
[2025-11-24 02:00:18] total 1324012
[2025-11-24 02:00:18] -rw-r--r--. 3 boincer umatlas 408967145 Nov 21 09:20 ATLAS.root_0
[2025-11-24 02:00:18] -rw-r--r--. 2 boincer umatlas    590097 Nov 21 09:20 input.tar.gz
[2025-11-24 02:00:18] -rw-r--r--. 2 boincer umatlas     15120 Nov 21 09:20 start_atlas.sh
[2025-11-24 02:00:18] -rw-------. 1 boincer umatlas 924182908 Nov 24 01:56 HITS.pool.root.1
[2025-11-24 02:00:18] -rw-------. 1 boincer umatlas  22016000 Nov 24 02:00 result.tar.gz
02:00:20 (1928114): run_atlas exited; CPU time 298713.079140
02:00:20 (1928114): called boinc_finish(0)

</stderr_txt>
]]>

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