Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:27:48 (2004984): wrapper (7.7.26015): starting
07:27:48 (2004984): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 07:27:48] Arguments: --nthreads 4
[2025-11-25 07:27:48] Threads: 4
[2025-11-25 07:27:48] Checking for CVMFS
[2025-11-25 07:27:48] No cvmfs_config command found, will try listing directly
[2025-11-25 07:27:48] CVMFS is ok
[2025-11-25 07:27:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 07:27:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 07:27:48] Further information can be found at the LHC@home message board.
[2025-11-25 07:27:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 07:27:48] Checking for apptainer binary...
[2025-11-25 07:27:48] which: no apptainer in ((null))
[2025-11-25 07:27:48] apptainer is not installed, using version from CVMFS
[2025-11-25 07:27:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 07:27:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot120/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-11-25 07:27:49] apptainer works
[2025-11-25 07:27:49] Set ATHENA_PROC_NUMBER=4
[2025-11-25 07:27:49] Set ATHENA_CORE_NUMBER=4
[2025-11-25 07:27:49] Starting ATLAS job with PandaID=6893849649
[2025-11-25 07:27:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot120/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 22:33:24]  *** The last 200 lines of the pilot log: ***
[2025-11-25 22:33:24] 2025-11-25 21:30:54,788 | INFO     | 54172s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 22:33:24] 2025-11-25 21:30:55,653 | INFO     | monitor loop #3656: job 0:6893849649 is in state 'finished'
[2025-11-25 22:33:24] 2025-11-25 21:30:55,654 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:33:24] 2025-11-25 21:30:55,797 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 22:33:24] 2025-11-25 21:30:55,816 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2694.9093984374986
[2025-11-25 22:33:24] 2025-11-25 21:30:55,840 | INFO     | using path: /scratch/boinc/var/slot120/slots/0/PanDA_Pilot-6893849649/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 22:33:24] 2025-11-25 21:30:55,840 | INFO     | extracted standard info from prmon json
[2025-11-25 22:33:24] 2025-11-25 21:30:55,841 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 22:33:24] 2025-11-25 21:30:55,841 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 22:33:24] 2025-11-25 21:30:55,854 | INFO     | fitting pss+swap vs Time
[2025-11-25 22:33:24] 2025-11-25 21:30:55,856 | INFO     | sum of square deviations: 217128469222.0
[2025-11-25 22:33:24] 2025-11-25 21:30:55,872 | INFO     | sum of deviations: 448955162883.0001
[2025-11-25 22:33:24] 2025-11-25 21:30:55,873 | INFO     | mean x: 1764079172.5
[2025-11-25 22:33:24] 2025-11-25 21:30:55,873 | INFO     | mean y: 2284082.6396396398
[2025-11-25 22:33:24] 2025-11-25 21:30:55,873 | INFO     | intersect: -3645291267.870863
[2025-11-25 22:33:24] 2025-11-25 21:30:55,874 | INFO     | chi2: 3.956393238712599
[2025-11-25 22:33:24] 2025-11-25 21:30:55,875 | INFO     | sum of square deviations: 213481368282.0
[2025-11-25 22:33:24] 2025-11-25 21:30:55,892 | INFO     | sum of deviations: 630005371632.0
[2025-11-25 22:33:24] 2025-11-25 21:30:55,892 | INFO     | mean x: 1764079020.0
[2025-11-25 22:33:24] 2025-11-25 21:30:55,892 | INFO     | mean y: 2291644.7066817665
[2025-11-25 22:33:24] 2025-11-25 21:30:55,892 | INFO     | intersect: -5203686129.968383
[2025-11-25 22:33:24] 2025-11-25 21:30:55,893 | INFO     | chi2: 1.8761723041108755
[2025-11-25 22:33:24] 2025-11-25 21:30:55,893 | INFO     | current chi2=1.8761723041108755 (change=52.57872029117667 %)
[2025-11-25 22:33:24] 2025-11-25 21:30:55,894 | INFO     | sum of square deviations: 209875337879.5
[2025-11-25 22:33:24] 2025-11-25 21:30:55,911 | INFO     | sum of deviations: 632633332518.0001
[2025-11-25 22:33:24] 2025-11-25 21:30:55,911 | INFO     | mean x: 1764078867.5
[2025-11-25 22:33:24] 2025-11-25 21:30:55,911 | INFO     | mean y: 2291753.952164009
[2025-11-25 22:33:24] 2025-11-25 21:30:55,911 | INFO     | intersect: -5315222462.091005
[2025-11-25 22:33:24] 2025-11-25 21:30:55,912 | INFO     | chi2: 1.848837486346039
[2025-11-25 22:33:24] 2025-11-25 21:30:55,912 | INFO     | current chi2=1.848837486346039 (change=1.4569460227583173 %)
[2025-11-25 22:33:24] 2025-11-25 21:30:55,912 | INFO     | right removable region: 877
[2025-11-25 22:33:24] 2025-11-25 21:30:55,913 | INFO     | sum of square deviations: 213481368282.0
[2025-11-25 22:33:24] 2025-11-25 21:30:55,930 | INFO     | sum of deviations: 297343170078.0
[2025-11-25 22:33:24] 2025-11-25 21:30:55,930 | INFO     | mean x: 1764079325.0
[2025-11-25 22:33:24] 2025-11-25 21:30:55,930 | INFO     | mean y: 2290408.490373726
[2025-11-25 22:33:24] 2025-11-25 21:30:55,931 | INFO     | intersect: -2454771502.7470837
[2025-11-25 22:33:24] 2025-11-25 21:30:55,931 | INFO     | chi2: 2.225469897103003
[2025-11-25 22:33:24] 2025-11-25 21:30:55,932 | INFO     | current chi2=2.225469897103003 (change=43.75003284994073 %)
[2025-11-25 22:33:24] 2025-11-25 21:30:55,933 | INFO     | sum of square deviations: 209875337879.5
[2025-11-25 22:33:24] 2025-11-25 21:30:55,949 | INFO     | sum of deviations: 287122877254.0
[2025-11-25 22:33:24] 2025-11-25 21:30:55,949 | INFO     | mean x: 1764079477.5
[2025-11-25 22:33:24] 2025-11-25 21:30:55,949 | INFO     | mean y: 2290840.1002277904
[2025-11-25 22:33:24] 2025-11-25 21:30:55,949 | INFO     | intersect: -2411082643.4261904
[2025-11-25 22:33:24] 2025-11-25 21:30:55,950 | INFO     | chi2: 2.223592705182574
[2025-11-25 22:33:24] 2025-11-25 21:30:55,950 | INFO     | current chi2=2.223592705182574 (change=0.08435036227056661 %)
[2025-11-25 22:33:24] 2025-11-25 21:30:55,950 | INFO     | left removable region: 20
[2025-11-25 22:33:24] 2025-11-25 21:30:55,951 | INFO     | sum of square deviations: 195173251988.0
[2025-11-25 22:33:24] 2025-11-25 21:30:55,967 | INFO     | sum of deviations: 467240402896.00006
[2025-11-25 22:33:24] 2025-11-25 21:30:55,967 | INFO     | mean x: 1764079447.0
[2025-11-25 22:33:24] 2025-11-25 21:30:55,967 | INFO     | mean y: 2298723.7036172696
[2025-11-25 22:33:24] 2025-11-25 21:30:55,967 | INFO     | intersect: -4220868043.059643
[2025-11-25 22:33:24] 2025-11-25 21:30:55,968 | INFO     | chi2: 0.09771967363150129
[2025-11-25 22:33:24] 2025-11-25 21:30:55,968 | INFO     | current memory leak: 2.39 B/s (using 857 data points, chi2=0.10)
[2025-11-25 22:33:24] 2025-11-25 21:30:55,969 | INFO     | could have reported an average CPU frequency of 2694 MHz (33 samples)
[2025-11-25 22:33:24] 2025-11-25 21:30:55,969 | INFO     | ..............................
[2025-11-25 22:33:24] 2025-11-25 21:30:55,969 | INFO     | . Timing measurements:
[2025-11-25 22:33:24] 2025-11-25 21:30:55,969 | INFO     | . get job = 0 s
[2025-11-25 22:33:24] 2025-11-25 21:30:55,969 | INFO     | . initial setup = 1 s
[2025-11-25 22:33:24] 2025-11-25 21:30:55,969 | INFO     | . payload setup = 9 s
[2025-11-25 22:33:24] 2025-11-25 21:30:55,969 | INFO     | . stage-in = 0 s
[2025-11-25 22:33:24] 2025-11-25 21:30:55,970 | INFO     | . payload execution = 54130 s
[2025-11-25 22:33:24] 2025-11-25 21:30:55,970 | INFO     | . stage-out = 2 s
[2025-11-25 22:33:24] 2025-11-25 21:30:55,970 | INFO     | . log creation = 0 s
[2025-11-25 22:33:24] 2025-11-25 21:30:55,970 | INFO     | ..............................
[2025-11-25 22:33:24] 2025-11-25 21:30:56,183 | INFO     | 
[2025-11-25 22:33:24] 2025-11-25 21:30:56,184 | INFO     | job summary report
[2025-11-25 22:33:24] 2025-11-25 21:30:56,184 | INFO     | --------------------------------------------------
[2025-11-25 22:33:24] 2025-11-25 21:30:56,184 | INFO     | PanDA job id: 6893849649
[2025-11-25 22:33:24] 2025-11-25 21:30:56,184 | INFO     | task id: 47523449
[2025-11-25 22:33:24] 2025-11-25 21:30:56,184 | INFO     | errors: (none)
[2025-11-25 22:33:24] 2025-11-25 21:30:56,185 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 22:33:24] 2025-11-25 21:30:56,185 | INFO     | pilot state: finished 
[2025-11-25 22:33:24] 2025-11-25 21:30:56,185 | INFO     | transexitcode: 0
[2025-11-25 22:33:24] 2025-11-25 21:30:56,185 | INFO     | exeerrorcode: 0
[2025-11-25 22:33:24] 2025-11-25 21:30:56,185 | INFO     | exeerrordiag: 
[2025-11-25 22:33:24] 2025-11-25 21:30:56,185 | INFO     | exitcode: 0
[2025-11-25 22:33:24] 2025-11-25 21:30:56,185 | INFO     | exitmsg: OK
[2025-11-25 22:33:24] 2025-11-25 21:30:56,185 | INFO     | cpuconsumptiontime: 214696 s
[2025-11-25 22:33:24] 2025-11-25 21:30:56,185 | INFO     | nevents: 1000
[2025-11-25 22:33:24] 2025-11-25 21:30:56,185 | INFO     | neventsw: 0
[2025-11-25 22:33:24] 2025-11-25 21:30:56,185 | INFO     | pid: 2016870
[2025-11-25 22:33:24] 2025-11-25 21:30:56,185 | INFO     | pgrp: 2016870
[2025-11-25 22:33:24] 2025-11-25 21:30:56,186 | INFO     | corecount: 4
[2025-11-25 22:33:24] 2025-11-25 21:30:56,186 | INFO     | event service: False
[2025-11-25 22:33:24] 2025-11-25 21:30:56,186 | INFO     | sizes: {0: 2284100, 1: 2284299, 7: 2284561, 11: 2284589, 54143: 2335501, 54146: 2344708, 54154: 2344962}
[2025-11-25 22:33:24] 2025-11-25 21:30:56,186 | INFO     | --------------------------------------------------
[2025-11-25 22:33:24] 2025-11-25 21:30:56,186 | INFO     | 
[2025-11-25 22:33:24] 2025-11-25 21:30:56,186 | INFO     | executing command: ls -lF /scratch/boinc/var/slot120/slots/0
[2025-11-25 22:33:24] 2025-11-25 21:30:56,218 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,218 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,218 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,218 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,219 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,219 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,219 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,219 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,219 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,219 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,219 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,219 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,219 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,219 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,220 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,220 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,220 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,220 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 22:33:24] 2025-11-25 21:30:56,220 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,220 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 22:33:24] 2025-11-25 21:30:56,220 | INFO     | job 6893849649 has completed (purged errors)
[2025-11-25 22:33:24] 2025-11-25 21:30:56,221 | INFO     | overall cleanup function is called
[2025-11-25 22:33:24] 2025-11-25 21:30:57,238 | INFO     | --- collectZombieJob: --- 10, [2016870]
[2025-11-25 22:33:24] 2025-11-25 21:30:57,239 | INFO     | zombie collector waiting for pid 2016870
[2025-11-25 22:33:24] 2025-11-25 21:30:57,239 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 22:33:24] 2025-11-25 21:30:57,242 | INFO     | collected zombie processes
[2025-11-25 22:33:24] 2025-11-25 21:30:57,243 | INFO     | will attempt to kill all subprocesses of pid=2016870
[2025-11-25 22:33:24] 2025-11-25 21:30:58,034 | INFO     | process IDs to be killed: [2016870] (in reverse order)
[2025-11-25 22:33:24] 2025-11-25 21:30:58,264 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 22:33:24] 2025-11-25 21:30:58,264 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 22:33:24] 2025-11-25 21:30:58,297 | INFO     | did not find any defunct processes belonging to 2016870
[2025-11-25 22:33:24] 2025-11-25 21:30:58,330 | INFO     | did not find any defunct processes belonging to 2016870
[2025-11-25 22:33:24] 2025-11-25 21:30:58,332 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 22:33:24] 2025-11-25 21:30:58,332 | INFO     | ready for new job
[2025-11-25 22:33:24] 2025-11-25 21:30:58,332 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 22:33:24] 2025-11-25 21:30:58,339 | INFO     | ***************************************
[2025-11-25 22:33:24] 2025-11-25 21:30:58,339 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 22:33:24] 2025-11-25 21:30:58,339 | INFO     | ***************************************
[2025-11-25 22:33:24] 2025-11-25 21:30:58,339 | INFO     | 
[2025-11-25 22:33:24] 2025-11-25 21:30:58,348 | INFO     | architecture information:
[2025-11-25 22:33:24] 2025-11-25 21:30:58,349 | INFO     | executing command: cat /etc/os-release
[2025-11-25 22:33:24] 2025-11-25 21:30:58,372 | INFO     | cat /etc/os-release:
[2025-11-25 22:33:24] NAME="CentOS Linux"
[2025-11-25 22:33:24] VERSION="7 (Core)"
[2025-11-25 22:33:24] ID="centos"
[2025-11-25 22:33:24] ID_LIKE="rhel fedora"
[2025-11-25 22:33:24] VERSION_ID="7"
[2025-11-25 22:33:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 22:33:24] ANSI_COLOR="0;31"
[2025-11-25 22:33:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 22:33:24] HOME_URL="https://www.centos.org/"
[2025-11-25 22:33:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 22:33:24] 
[2025-11-25 22:33:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 22:33:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 22:33:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 22:33:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 22:33:24] 
[2025-11-25 22:33:24] 2025-11-25 21:30:58,373 | INFO     | ***************************************
[2025-11-25 22:33:24] 2025-11-25 21:30:58,876 | INFO     | executing command: df -mP /scratch/boinc/var/slot120/slots/0
[2025-11-25 22:33:24] 2025-11-25 21:30:58,902 | INFO     | sufficient remaining disk space (3278772371456 B)
[2025-11-25 22:33:24] 2025-11-25 21:30:58,903 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 22:33:24] 2025-11-25 21:30:58,903 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 22:33:24] 2025-11-25 21:30:58,903 | INFO     | update_server=False
[2025-11-25 22:33:24] 2025-11-25 21:30:58,903 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 22:33:24] 2025-11-25 21:30:58,903 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 22:33:24] 2025-11-25 21:30:58,903 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 22:33:24] 2025-11-25 21:30:58,907 | INFO     | all job control threads have been joined
[2025-11-25 22:33:24] 2025-11-25 21:30:59,161 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:33:24] 2025-11-25 21:30:59,162 | INFO     | aborting loop
[2025-11-25 22:33:24] 2025-11-25 21:30:59,904 | INFO     | [job] retrieve thread has finished
[2025-11-25 22:33:24] 2025-11-25 21:30:59,913 | INFO     | [job] control thread has finished
[2025-11-25 22:33:24] 2025-11-25 21:30:59,978 | INFO     | all data control threads have been joined
[2025-11-25 22:33:24] 2025-11-25 21:30:59,992 | INFO     | [payload] failed_post thread has finished
[2025-11-25 22:33:24] 2025-11-25 21:31:00,021 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 22:33:24] 2025-11-25 21:31:00,168 | INFO     | [job] job monitor thread has finished
[2025-11-25 22:33:24] 2025-11-25 21:31:00,175 | INFO     | all payload control threads have been joined
[2025-11-25 22:33:24] 2025-11-25 21:31:00,563 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 22:33:24] 2025-11-25 21:31:00,636 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 22:33:24] 2025-11-25 21:31:00,671 | INFO     | [payload] validate_post thread has finished
[2025-11-25 22:33:24] 2025-11-25 21:31:00,824 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 22:33:24] 2025-11-25 21:31:00,909 | INFO     | [data] copytool_out thread has finished
[2025-11-25 22:33:24] 2025-11-25 21:31:00,916 | INFO     | [job] validate thread has finished
[2025-11-25 22:33:24] 2025-11-25 21:31:00,938 | INFO     | [data] copytool_in thread has finished
[2025-11-25 22:33:24] 2025-11-25 21:31:00,984 | INFO     | [data] control thread has finished
[2025-11-25 22:33:24] 2025-11-25 21:31:01,067 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:33:24] 2025-11-25 21:31:01,180 | INFO     | [payload] control thread has finished
[2025-11-25 22:33:24] 2025-11-25 21:31:02,073 | INFO     | [job] queue monitor thread has finished
[2025-11-25 22:33:24] 2025-11-25 21:31:02,910 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 22:33:24] 2025-11-25 21:31:28,853 | INFO     | PID=2008984 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 22:33:24] 2025-11-25 21:31:28,853 | INFO     | .. there are 5 such processes running
[2025-11-25 22:33:24] 2025-11-25 21:31:28,853 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 22:33:24] 2025-11-25 21:31:28,853 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 22:33:24] 2025-11-25 21:31:28,854 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 22:33:24] 2025-11-25 21:31:30,733 | INFO     | [monitor] cgroup control has ended
[2025-11-25 22:33:24] 2025-11-25 21:31:30,965 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23043306174272)>', '<ExcThread(monitor, started 23043067836160)>']
[2025-11-25 22:33:24] 2025-11-25 21:31:31,868 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 22:33:24] 2025-11-25 21:31:31,869 | INFO     | [monitor] control thread has ended
[2025-11-25 22:33:24] 2025-11-25 21:31:35,989 | INFO     | all workflow threads have been joined
[2025-11-25 22:33:24] 2025-11-25 21:31:35,990 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 22:33:24] 2025-11-25 21:31:35,990 | INFO     | traces error code: 0
[2025-11-25 22:33:24] 2025-11-25 21:31:35,990 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 22:33:24] 2025-11-25 21:31:36,209 [wrapper] ==== pilot stdout END ====
[2025-11-25 22:33:24] 2025-11-25 21:31:36,213 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 22:33:24] 2025-11-25 21:31:36,218 [wrapper] pilotpid: 2008984
[2025-11-25 22:33:24] 2025-11-25 21:31:36,221 [wrapper] Pilot exit status: 0
[2025-11-25 22:33:24] 2025-11-25 21:31:36,235 [wrapper] pandaids: 6893849649
[2025-11-25 22:33:24] 2025-11-25 21:31:36,409 [wrapper] cleanup supervisor_pilot 3122838 2008985
[2025-11-25 22:33:24] 2025-11-25 21:31:36,414 [wrapper] Test setup, not cleaning
[2025-11-25 22:33:24] 2025-11-25 21:31:36,418 [wrapper] apfmon messages muted
[2025-11-25 22:33:24] 2025-11-25 21:31:36,421 [wrapper] ==== wrapper stdout END ====
[2025-11-25 22:33:24] 2025-11-25 21:31:36,425 [wrapper] ==== wrapper stderr END ====
[2025-11-25 22:33:24]  *** Error codes and diagnostics ***
[2025-11-25 22:33:24]     "exeErrorCode": 0,
[2025-11-25 22:33:24]     "exeErrorDiag": "",
[2025-11-25 22:33:24]     "pilotErrorCode": 0,
[2025-11-25 22:33:24]     "pilotErrorDiag": "",
[2025-11-25 22:33:24]  *** Listing of results directory ***
[2025-11-25 22:33:24] total 1314132
[2025-11-25 22:33:24] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:57 pilot3.tar.gz
[2025-11-25 22:33:24] -rwx------ 1 boinc boinc     36292 Nov 20 11:59 runpilot2-wrapper.sh
[2025-11-25 22:33:24] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:59 queuedata.json
[2025-11-25 22:33:24] -rw-r--r-- 1 boinc boinc       100 Nov 25 07:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 22:33:24] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 07:27 run_atlas
[2025-11-25 22:33:24] -rw-r--r-- 1 boinc boinc       105 Nov 25 07:27 job.xml
[2025-11-25 22:33:24] -rw-r--r-- 2 boinc boinc 411160206 Nov 25 07:27 EVNT.47493127._000296.pool.root.1
[2025-11-25 22:33:24] -rw-r--r-- 1 boinc boinc      6689 Nov 25 07:27 init_data.xml
[2025-11-25 22:33:24] -rw-r--r-- 2 boinc boinc     15847 Nov 25 07:27 start_atlas.sh
[2025-11-25 22:33:24] drwxrwx--x 2 boinc boinc      4096 Nov 25 07:27 shared
[2025-11-25 22:33:24] -rw-r--r-- 2 boinc boinc    590095 Nov 25 07:27 input.tar.gz
[2025-11-25 22:33:24] -rw-r--r-- 1 boinc boinc         0 Nov 25 07:27 boinc_lockfile
[2025-11-25 22:33:24] -rw-r--r-- 1 boinc boinc      2785 Nov 25 07:27 pandaJob.out
[2025-11-25 22:33:24] -rw------- 1 boinc boinc    991801 Nov 25 07:28 agis_schedconf.cvmfs.json
[2025-11-25 22:33:24] drwx------ 5 boinc boinc      4096 Nov 25 07:28 pilot3
[2025-11-25 22:33:24] -rw-r--r-- 1 boinc boinc       532 Nov 25 22:24 boinc_task_state.xml
[2025-11-25 22:33:24] -rw------- 1 boinc boinc 912383726 Nov 25 22:30 HITS.47523449._002956.pool.root.1
[2025-11-25 22:33:24] -rw------- 1 boinc boinc        95 Nov 25 22:30 pilot_heartbeat.json
[2025-11-25 22:33:24] -rw------- 1 boinc boinc      1040 Nov 25 22:30 memory_monitor_summary.json
[2025-11-25 22:33:24] -rw------- 1 boinc boinc   1516240 Nov 25 22:30 agis_ddmendpoints.agis.ALL.json
[2025-11-25 22:33:24] -rw------- 1 boinc boinc   1644435 Nov 25 22:30 log.47523449._002956.job.log.tgz.1
[2025-11-25 22:33:24] -rw------- 1 boinc boinc      7924 Nov 25 22:30 heartbeat.json
[2025-11-25 22:33:24] -rw------- 1 boinc boinc      4835 Nov 25 22:31 pilotlog.txt
[2025-11-25 22:33:24] -rw------- 1 boinc boinc   7465443 Nov 25 22:31 log.47523449._002956.job.log.1
[2025-11-25 22:33:24] -rw------- 1 boinc boinc       353 Nov 25 22:31 output.list
[2025-11-25 22:33:24] -rw-r--r-- 1 boinc boinc       620 Nov 25 22:31 runtime_log
[2025-11-25 22:33:24] -rw------- 1 boinc boinc   9123840 Nov 25 22:31 result.tar.gz
[2025-11-25 22:33:24] -rw-r--r-- 1 boinc boinc      9223 Nov 25 22:31 runtime_log.err
[2025-11-25 22:33:24] -rw------- 1 boinc boinc       670 Nov 25 22:31 J74MDmdYHg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmFUGKDmIervHn.diag
[2025-11-25 22:33:24] -rw-r--r-- 1 boinc boinc        28 Nov 25 22:33 wrapper_checkpoint.txt
[2025-11-25 22:33:24] -rw-r--r-- 1 boinc boinc      8192 Nov 25 22:33 boinc_mmap_file
[2025-11-25 22:33:24] -rw-r--r-- 1 boinc boinc     21065 Nov 25 22:33 stderr.txt
[2025-11-25 22:33:24] HITS file was successfully produced:
[2025-11-25 22:33:24] -rw------- 1 boinc boinc 912383726 Nov 25 22:30 shared/HITS.pool.root.1
[2025-11-25 22:33:24]  *** Contents of shared directory: ***
[2025-11-25 22:33:24] total 1302040
[2025-11-25 22:33:24] -rw-r--r-- 2 boinc boinc 411160206 Nov 25 07:27 ATLAS.root_0
[2025-11-25 22:33:24] -rw-r--r-- 2 boinc boinc     15847 Nov 25 07:27 start_atlas.sh
[2025-11-25 22:33:24] -rw-r--r-- 2 boinc boinc    590095 Nov 25 07:27 input.tar.gz
[2025-11-25 22:33:24] -rw------- 1 boinc boinc 912383726 Nov 25 22:30 HITS.pool.root.1
[2025-11-25 22:33:24] -rw------- 1 boinc boinc   9123840 Nov 25 22:31 result.tar.gz
22:33:25 (2004984): run_atlas exited; CPU time 217703.190887
22:33:25 (2004984): called boinc_finish(0)

</stderr_txt>
]]>

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