Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:21:13 (549957): wrapper (7.7.26015): starting
00:21:13 (549957): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 00:21:13] Arguments: --nthreads 8
[2025-11-21 00:21:13] Threads: 8
[2025-11-21 00:21:13] Checking for CVMFS
[2025-11-21 00:21:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:21:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:21:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:21:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:21:14] 2.13.2.0 34200 26088 200976 153110 3 95 21727689 40960000 6879 16776704 0 18782398 99.672 12486910 28687 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 00:21:14] CVMFS is ok
[2025-11-21 00:21:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:21:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:21:14] Further information can be found at the LHC@home message board.
[2025-11-21 00:21:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:21:14] Checking for apptainer binary...
[2025-11-21 00:21:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:21:14] Running /usr/bin/apptainer --version
[2025-11-21 00:21:14] apptainer version 1.4.4-1.el9
[2025-11-21 00:21:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:21:15] c-211-13.aglt2.org
[2025-11-21 00:21:15] apptainer works
[2025-11-21 00:21:15] Set ATHENA_PROC_NUMBER=8
[2025-11-21 00:21:15] Set ATHENA_CORE_NUMBER=8
[2025-11-21 00:21:15] Starting ATLAS job with PandaID=6893861441
[2025-11-21 00:21:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 14:04:40]  *** The last 200 lines of the pilot log: ***
[2025-11-21 14:04:40] 2025-11-21 19:03:02,596 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 14:04:40] 2025-11-21 19:03:02,555 | INFO     | time since job start (49275s) is within the limit (172800.0s)
[2025-11-21 14:04:40] 2025-11-21 19:03:04,615 | INFO     | time since job start (49277s) is within the limit (172800.0s)
[2025-11-21 14:04:40] 2025-11-21 19:03:05,106 | INFO     | monitor loop #3344: job 0:6893861441 is in state 'finished'
[2025-11-21 14:04:40] 2025-11-21 19:03:05,106 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 14:04:40] 2025-11-21 19:03:06,651 | INFO     | time since job start (49279s) is within the limit (172800.0s)
[2025-11-21 14:04:40] 2025-11-21 19:03:07,721 | INFO     | monitor loop #3345: job 0:6893861441 is in state 'finished'
[2025-11-21 14:04:40] 2025-11-21 19:03:07,722 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 14:04:40] 2025-11-21 19:03:08,702 | INFO     | time since job start (49281s) is within the limit (172800.0s)
[2025-11-21 14:04:40] 2025-11-21 19:03:10,335 | INFO     | monitor loop #3346: job 0:6893861441 is in state 'finished'
[2025-11-21 14:04:40] 2025-11-21 19:03:10,336 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 14:04:40] 2025-11-21 19:03:10,742 | INFO     | time since job start (49283s) is within the limit (172800.0s)
[2025-11-21 14:04:40] 2025-11-21 19:03:12,894 | INFO     | monitor loop #3347: job 0:6893861441 is in state 'finished'
[2025-11-21 14:04:40] 2025-11-21 19:03:12,894 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 14:04:40] 2025-11-21 19:03:13,484 | INFO     | PID=554959 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 14:04:40] 2025-11-21 19:03:13,484 | INFO     | .. there are 12 such processes running
[2025-11-21 14:04:40] 2025-11-21 19:03:13,596 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 14:04:40] 2025-11-21 19:03:13,677 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2600.1787291666674
[2025-11-21 14:04:40] 2025-11-21 19:03:13,810 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6893861441/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 14:04:40] 2025-11-21 19:03:13,811 | INFO     | extracted standard info from prmon json
[2025-11-21 14:04:40] 2025-11-21 19:03:13,814 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 14:04:40] 2025-11-21 19:03:13,814 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 14:04:40] 2025-11-21 19:03:13,850 | INFO     | fitting pss+swap vs Time
[2025-11-21 14:04:40] 2025-11-21 19:03:13,852 | INFO     | sum of square deviations: 162364544875.60776
[2025-11-21 14:04:40] 2025-11-21 19:03:14,149 | INFO     | sum of deviations: -2517189771132.183
[2025-11-21 14:04:40] 2025-11-21 19:03:14,149 | INFO     | mean x: 1763727105.430521
[2025-11-21 14:04:40] 2025-11-21 19:03:14,149 | INFO     | mean y: 2700002.3895781636
[2025-11-21 14:04:40] 2025-11-21 19:03:14,149 | INFO     | intersect: 27346328700.758526
[2025-11-21 14:04:40] 2025-11-21 19:03:14,151 | INFO     | chi2: 52.91682148333198
[2025-11-21 14:04:40] 2025-11-21 19:03:14,152 | INFO     | sum of square deviations: 159361812460.6244
[2025-11-21 14:04:40] 2025-11-21 19:03:14,169 | INFO     | sum of deviations: -2226014324687.7563
[2025-11-21 14:04:40] 2025-11-21 19:03:14,170 | INFO     | mean x: 1763726952.9350812
[2025-11-21 14:04:40] 2025-11-21 19:03:14,170 | INFO     | mean y: 2714787.1585518103
[2025-11-21 14:04:40] 2025-11-21 19:03:14,170 | INFO     | intersect: 24638989949.010437
[2025-11-21 14:04:40] 2025-11-21 19:03:14,171 | INFO     | chi2: 47.949565506331176
[2025-11-21 14:04:40] 2025-11-21 19:03:14,172 | INFO     | current chi2=47.949565506331176 (change=9.386912965975132 %)
[2025-11-21 14:04:40] 2025-11-21 19:03:14,172 | INFO     | right removable region: 800
[2025-11-21 14:04:40] 2025-11-21 19:03:14,173 | INFO     | sum of square deviations: 159361404003.75287
[2025-11-21 14:04:40] 2025-11-21 19:03:14,190 | INFO     | sum of deviations: -2753650735111.0513
[2025-11-21 14:04:40] 2025-11-21 19:03:14,190 | INFO     | mean x: 1763727257.9363296
[2025-11-21 14:04:40] 2025-11-21 19:03:14,190 | INFO     | mean y: 2712000.077403246
[2025-11-21 14:04:40] 2025-11-21 19:03:14,190 | INFO     | intersect: 30478653717.040447
[2025-11-21 14:04:40] 2025-11-21 19:03:14,196 | INFO     | chi2: 50.343251041159654
[2025-11-21 14:04:40] 2025-11-21 19:03:14,196 | INFO     | current chi2=50.343251041159654 (change=4.863425976904078 %)
[2025-11-21 14:04:40] 2025-11-21 19:03:14,196 | INFO     | left removable region: 10
[2025-11-21 14:04:40] 2025-11-21 19:03:14,197 | INFO     | sum of square deviations: 152885858443.04947
[2025-11-21 14:04:40] 2025-11-21 19:03:14,229 | INFO     | sum of deviations: -2457882976002.4473
[2025-11-21 14:04:40] 2025-11-21 19:03:14,230 | INFO     | mean x: 1763727227.4443038
[2025-11-21 14:04:40] 2025-11-21 19:03:14,230 | INFO     | mean y: 2731333.9670886076
[2025-11-21 14:04:40] 2025-11-21 19:03:14,230 | INFO     | intersect: 28357447530.705235
[2025-11-21 14:04:40] 2025-11-21 19:03:14,231 | INFO     | chi2: 44.65928534294921
[2025-11-21 14:04:40] 2025-11-21 19:03:14,231 | INFO     | current memory leak: -16.08 B/s (using 790 data points, chi2=44.66)
[2025-11-21 14:04:40] 2025-11-21 19:03:14,236 | INFO     | could have reported an average CPU frequency of 2746 MHz (30 samples)
[2025-11-21 14:04:40] 2025-11-21 19:03:14,237 | INFO     | ..............................
[2025-11-21 14:04:40] 2025-11-21 19:03:14,237 | INFO     | . Timing measurements:
[2025-11-21 14:04:40] 2025-11-21 19:03:14,237 | INFO     | . get job = 0 s
[2025-11-21 14:04:40] 2025-11-21 19:03:14,237 | INFO     | . initial setup = 3 s
[2025-11-21 14:04:40] 2025-11-21 19:03:14,237 | INFO     | . payload setup = 12 s
[2025-11-21 14:04:40] 2025-11-21 19:03:14,237 | INFO     | . stage-in = 0 s
[2025-11-21 14:04:40] 2025-11-21 19:03:14,237 | INFO     | . payload execution = 49176 s
[2025-11-21 14:04:40] 2025-11-21 19:03:14,237 | INFO     | . stage-out = 13 s
[2025-11-21 14:04:40] 2025-11-21 19:03:14,238 | INFO     | . log creation = 7 s
[2025-11-21 14:04:40] 2025-11-21 19:03:14,238 | INFO     | ..............................
[2025-11-21 14:04:40] 2025-11-21 19:03:14,488 | INFO     | 
[2025-11-21 14:04:40] 2025-11-21 19:03:14,488 | INFO     | job summary report
[2025-11-21 14:04:40] 2025-11-21 19:03:14,489 | INFO     | --------------------------------------------------
[2025-11-21 14:04:40] 2025-11-21 19:03:14,489 | INFO     | PanDA job id: 6893861441
[2025-11-21 14:04:40] 2025-11-21 19:03:14,489 | INFO     | task id: 47523449
[2025-11-21 14:04:40] 2025-11-21 19:03:14,489 | INFO     | errors: (none)
[2025-11-21 14:04:40] 2025-11-21 19:03:14,489 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 14:04:40] 2025-11-21 19:03:14,489 | INFO     | pilot state: finished 
[2025-11-21 14:04:40] 2025-11-21 19:03:14,490 | INFO     | transexitcode: 0
[2025-11-21 14:04:40] 2025-11-21 19:03:14,490 | INFO     | exeerrorcode: 0
[2025-11-21 14:04:40] 2025-11-21 19:03:14,490 | INFO     | exeerrordiag: 
[2025-11-21 14:04:40] 2025-11-21 19:03:14,490 | INFO     | exitcode: 0
[2025-11-21 14:04:40] 2025-11-21 19:03:14,490 | INFO     | exitmsg: OK
[2025-11-21 14:04:40] 2025-11-21 19:03:14,490 | INFO     | cpuconsumptiontime: 325103 s
[2025-11-21 14:04:40] 2025-11-21 19:03:14,490 | INFO     | nevents: 1000
[2025-11-21 14:04:40] 2025-11-21 19:03:14,490 | INFO     | neventsw: 0
[2025-11-21 14:04:40] 2025-11-21 19:03:14,490 | INFO     | pid: 561683
[2025-11-21 14:04:40] 2025-11-21 19:03:14,491 | INFO     | pgrp: 561683
[2025-11-21 14:04:40] 2025-11-21 19:03:14,491 | INFO     | corecount: 8
[2025-11-21 14:04:40] 2025-11-21 19:03:14,491 | INFO     | event service: False
[2025-11-21 14:04:40] 2025-11-21 19:03:14,491 | INFO     | sizes: {0: 2297973, 1: 2298829, 2: 2298829, 9: 2299119, 12: 2299147, 49192: 2346730, 49193: 2346857, 49208: 2355907, 49209: 2355963, 49265: 2356209}
[2025-11-21 14:04:40] 2025-11-21 19:03:14,491 | INFO     | --------------------------------------------------
[2025-11-21 14:04:40] 2025-11-21 19:03:14,491 | INFO     | 
[2025-11-21 14:04:40] 2025-11-21 19:03:14,491 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-21 14:04:40] 2025-11-21 19:03:14,506 | INFO     | time since job start (49287s) is within the limit (172800.0s)
[2025-11-21 14:04:40] 2025-11-21 19:03:14,563 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,564 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,564 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,564 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,564 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,564 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,564 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,565 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,565 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,565 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,565 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,565 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,565 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,565 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,565 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,565 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,566 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,566 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 14:04:40] 2025-11-21 19:03:14,566 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,566 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 14:04:40] 2025-11-21 19:03:14,566 | INFO     | job 6893861441 has completed (purged errors)
[2025-11-21 14:04:40] 2025-11-21 19:03:14,566 | INFO     | overall cleanup function is called
[2025-11-21 14:04:40] 2025-11-21 19:03:15,596 | INFO     | --- collectZombieJob: --- 10, [561683]
[2025-11-21 14:04:40] 2025-11-21 19:03:15,596 | INFO     | zombie collector waiting for pid 561683
[2025-11-21 14:04:40] 2025-11-21 19:03:15,597 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 14:04:40] 2025-11-21 19:03:15,597 | INFO     | collected zombie processes
[2025-11-21 14:04:40] 2025-11-21 19:03:15,597 | INFO     | will attempt to kill all subprocesses of pid=561683
[2025-11-21 14:04:40] 2025-11-21 19:03:17,509 | INFO     | process IDs to be killed: [561683] (in reverse order)
[2025-11-21 14:04:40] 2025-11-21 19:03:18,395 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 14:04:40] 2025-11-21 19:03:18,395 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 14:04:40] 2025-11-21 19:03:18,422 | INFO     | did not find any defunct processes belonging to 561683
[2025-11-21 14:04:40] 2025-11-21 19:03:18,445 | INFO     | did not find any defunct processes belonging to 561683
[2025-11-21 14:04:40] 2025-11-21 19:03:18,449 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 14:04:40] 2025-11-21 19:03:18,449 | INFO     | ready for new job
[2025-11-21 14:04:40] 2025-11-21 19:03:18,449 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 14:04:40] 2025-11-21 19:03:18,454 | INFO     | ***************************************
[2025-11-21 14:04:40] 2025-11-21 19:03:18,454 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 14:04:40] 2025-11-21 19:03:18,454 | INFO     | ***************************************
[2025-11-21 14:04:40] 2025-11-21 19:03:18,454 | INFO     | 
[2025-11-21 14:04:40] 2025-11-21 19:03:18,457 | INFO     | architecture information:
[2025-11-21 14:04:40] 2025-11-21 19:03:18,462 | INFO     | executing command: cat /etc/os-release
[2025-11-21 14:04:40] 2025-11-21 19:03:18,509 | INFO     | cat /etc/os-release:
[2025-11-21 14:04:40] NAME="CentOS Linux"
[2025-11-21 14:04:40] VERSION="7 (Core)"
[2025-11-21 14:04:40] ID="centos"
[2025-11-21 14:04:40] ID_LIKE="rhel fedora"
[2025-11-21 14:04:40] VERSION_ID="7"
[2025-11-21 14:04:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 14:04:40] ANSI_COLOR="0;31"
[2025-11-21 14:04:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 14:04:40] HOME_URL="https://www.centos.org/"
[2025-11-21 14:04:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 14:04:40] 
[2025-11-21 14:04:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 14:04:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 14:04:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 14:04:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 14:04:40] 
[2025-11-21 14:04:40] 2025-11-21 19:03:18,510 | INFO     | ***************************************
[2025-11-21 14:04:40] 2025-11-21 19:03:19,013 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-21 14:04:40] 2025-11-21 19:03:19,262 | INFO     | sufficient remaining disk space (57907609600 B)
[2025-11-21 14:04:40] 2025-11-21 19:03:19,263 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 14:04:40] 2025-11-21 19:03:19,263 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 14:04:40] 2025-11-21 19:03:19,263 | INFO     | update_server=False
[2025-11-21 14:04:40] 2025-11-21 19:03:19,263 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 14:04:40] 2025-11-21 19:03:19,263 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 14:04:40] 2025-11-21 19:03:19,264 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 14:04:40] 2025-11-21 19:03:19,264 | INFO     | aborting loop
[2025-11-21 14:04:40] 2025-11-21 19:03:19,483 | INFO     | all job control threads have been joined
[2025-11-21 14:04:40] 2025-11-21 19:03:19,529 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 14:04:40] 2025-11-21 19:03:20,106 | INFO     | all data control threads have been joined
[2025-11-21 14:04:40] 2025-11-21 19:03:20,269 | INFO     | [job] retrieve thread has finished
[2025-11-21 14:04:40] 2025-11-21 19:03:20,270 | INFO     | [job] job monitor thread has finished
[2025-11-21 14:04:40] 2025-11-21 19:03:20,492 | INFO     | [job] control thread has finished
[2025-11-21 14:04:40] 2025-11-21 19:03:20,517 | INFO     | [payload] validate_post thread has finished
[2025-11-21 14:04:40] 2025-11-21 19:03:20,566 | INFO     | [job] queue monitor thread has finished
[2025-11-21 14:04:40] 2025-11-21 19:03:20,574 | INFO     | all payload control threads have been joined
[2025-11-21 14:04:40] 2025-11-21 19:03:20,649 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 14:04:40] 2025-11-21 19:03:20,699 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 14:04:40] 2025-11-21 19:03:20,728 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 14:04:40] 2025-11-21 19:03:20,765 | INFO     | [data] copytool_in thread has finished
[2025-11-21 14:04:40] 2025-11-21 19:03:20,772 | INFO     | [job] validate thread has finished
[2025-11-21 14:04:40] 2025-11-21 19:03:21,111 | INFO     | [data] control thread has finished
[2025-11-21 14:04:40] 2025-11-21 19:03:21,223 | INFO     | [payload] failed_post thread has finished
[2025-11-21 14:04:40] 2025-11-21 19:03:21,581 | INFO     | [payload] control thread has finished
[2025-11-21 14:04:40] 2025-11-21 19:03:21,607 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 14:04:40] 2025-11-21 19:03:21,718 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 14:04:40] 2025-11-21 19:03:22,706 | INFO     | [data] copytool_out thread has finished
[2025-11-21 14:04:40] 2025-11-21 19:03:23,272 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 14:04:40] 2025-11-21 19:03:54,449 | INFO     | PID=554959 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 14:04:40] 2025-11-21 19:03:54,450 | INFO     | .. there are 12 such processes running
[2025-11-21 14:04:40] 2025-11-21 19:03:54,467 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 14:04:40] 2025-11-21 19:03:54,468 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 14:04:40] 2025-11-21 19:03:54,468 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 14:04:40] 2025-11-21 19:04:11,759 | INFO     | [monitor] cgroup control has ended
[2025-11-21 14:04:40] 2025-11-21 19:04:12,971 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140384455554880)>', '<ExcThread(monitor, started 140383673636608)>']
[2025-11-21 14:04:40] 2025-11-21 19:04:13,655 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 14:04:40] 2025-11-21 19:04:13,655 | INFO     | [monitor] control thread has ended
[2025-11-21 14:04:40] 2025-11-21 19:04:17,996 | INFO     | all workflow threads have been joined
[2025-11-21 14:04:40] 2025-11-21 19:04:17,997 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 14:04:40] 2025-11-21 19:04:17,997 | INFO     | traces error code: 0
[2025-11-21 14:04:40] 2025-11-21 19:04:17,997 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 14:04:40] 2025-11-21 19:04:19,782 [wrapper] ==== pilot stdout END ====
[2025-11-21 14:04:40] 2025-11-21 19:04:20,004 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 14:04:40] 2025-11-21 19:04:20,076 [wrapper] pilotpid: 554959
[2025-11-21 14:04:40] 2025-11-21 19:04:20,098 [wrapper] Pilot exit status: 0
[2025-11-21 14:04:40] 2025-11-21 19:04:20,471 [wrapper] pandaids: 6893861441
[2025-11-21 14:04:40] 2025-11-21 19:04:21,787 [wrapper] cleanup supervisor_pilot 1823920 554960
[2025-11-21 14:04:40] 2025-11-21 19:04:21,872 [wrapper] Test setup, not cleaning
[2025-11-21 14:04:40] 2025-11-21 19:04:21,915 [wrapper] apfmon messages muted
[2025-11-21 14:04:40] 2025-11-21 19:04:21,990 [wrapper] ==== wrapper stdout END ====
[2025-11-21 14:04:40] 2025-11-21 19:04:22,018 [wrapper] ==== wrapper stderr END ====
[2025-11-21 14:04:40]  *** Error codes and diagnostics ***
[2025-11-21 14:04:40]     "exeErrorCode": 0,
[2025-11-21 14:04:40]     "exeErrorDiag": "",
[2025-11-21 14:04:40]     "pilotErrorCode": 0,
[2025-11-21 14:04:40]     "pilotErrorDiag": "",
[2025-11-21 14:04:40]  *** Listing of results directory ***
[2025-11-21 14:04:40] total 1316904
[2025-11-21 14:04:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 08:50 pilot3.tar.gz
[2025-11-21 14:04:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 08:51 queuedata.json
[2025-11-21 14:04:40] -rwx------. 1 boincer umatlas     36292 Nov 20 08:51 runpilot2-wrapper.sh
[2025-11-21 14:04:40] -rw-r--r--. 1 boincer umatlas       100 Nov 21 00:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 14:04:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 00:21 run_atlas
[2025-11-21 14:04:40] -rw-r--r--. 1 boincer umatlas       105 Nov 21 00:21 job.xml
[2025-11-21 14:04:40] -rw-r--r--. 2 boincer umatlas 409549283 Nov 21 00:21 EVNT.47493127._000568.pool.root.1
[2025-11-21 14:04:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:21 start_atlas.sh
[2025-11-21 14:04:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 00:21 shared
[2025-11-21 14:04:40] -rw-r--r--. 2 boincer umatlas    590101 Nov 21 00:21 input.tar.gz
[2025-11-21 14:04:40] -rw-r--r--. 1 boincer umatlas         0 Nov 21 00:21 boinc_lockfile
[2025-11-21 14:04:40] -rw-r--r--. 1 boincer umatlas      2783 Nov 21 00:21 pandaJob.out
[2025-11-21 14:04:40] -rw-------. 1 boincer umatlas        57 Nov 21 00:21 setup.sh.local
[2025-11-21 14:04:40] -rw-------. 1 boincer umatlas    989817 Nov 21 00:21 agis_schedconf.cvmfs.json
[2025-11-21 14:04:40] drwx------. 5 boincer umatlas      4096 Nov 21 00:21 pilot3
[2025-11-21 14:04:40] -rw-r--r--. 1 boincer umatlas       533 Nov 21 12:13 boinc_task_state.xml
[2025-11-21 14:04:40] -rw-------. 1 boincer umatlas 917652382 Nov 21 13:56 HITS.47523449._005671.pool.root.1
[2025-11-21 14:04:40] -rw-------. 1 boincer umatlas      1054 Nov 21 14:01 memory_monitor_summary.json
[2025-11-21 14:04:40] -rw-------. 1 boincer umatlas   1526164 Nov 21 14:02 agis_ddmendpoints.agis.ALL.json
[2025-11-21 14:04:40] -rw-------. 1 boincer umatlas   2041123 Nov 21 14:02 log.47523449._005671.job.log.tgz.1
[2025-11-21 14:04:40] -rw-------. 1 boincer umatlas      8624 Nov 21 14:03 heartbeat.json
[2025-11-21 14:04:40] -rw-------. 1 boincer umatlas        95 Nov 21 14:03 pilot_heartbeat.json
[2025-11-21 14:04:40] -rw-------. 1 boincer umatlas      4823 Nov 21 14:04 pilotlog.txt
[2025-11-21 14:04:40] -rw-------. 1 boincer umatlas   6651880 Nov 21 14:04 log.47523449._005671.job.log.1
[2025-11-21 14:04:40] -rw-------. 1 boincer umatlas       353 Nov 21 14:04 output.list
[2025-11-21 14:04:40] -rw-r--r--. 1 boincer umatlas       620 Nov 21 14:04 runtime_log
[2025-11-21 14:04:40] -rw-------. 1 boincer umatlas   8714240 Nov 21 14:04 result.tar.gz
[2025-11-21 14:04:40] -rw-r--r--. 1 boincer umatlas      9343 Nov 21 14:04 runtime_log.err
[2025-11-21 14:04:40] -rw-------. 1 boincer umatlas       660 Nov 21 14:04 GRkKDmTFKg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkkGKDm9gEZHn.diag
[2025-11-21 14:04:40] -rw-r--r--. 1 boincer umatlas      6615 Nov 21 14:04 init_data.xml
[2025-11-21 14:04:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 14:04 boinc_mmap_file
[2025-11-21 14:04:40] -rw-r--r--. 1 boincer umatlas        29 Nov 21 14:04 wrapper_checkpoint.txt
[2025-11-21 14:04:40] -rw-r--r--. 1 boincer umatlas     13481 Nov 21 14:04 stderr.txt
[2025-11-21 14:04:40] HITS file was successfully produced:
[2025-11-21 14:04:40] -rw-------. 1 boincer umatlas 917652382 Nov 21 13:56 shared/HITS.pool.root.1
[2025-11-21 14:04:40]  *** Contents of shared directory: ***
[2025-11-21 14:04:40] total 1305216
[2025-11-21 14:04:40] -rw-r--r--. 2 boincer umatlas 409549283 Nov 21 00:21 ATLAS.root_0
[2025-11-21 14:04:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:21 start_atlas.sh
[2025-11-21 14:04:40] -rw-r--r--. 2 boincer umatlas    590101 Nov 21 00:21 input.tar.gz
[2025-11-21 14:04:40] -rw-------. 1 boincer umatlas 917652382 Nov 21 13:56 HITS.pool.root.1
[2025-11-21 14:04:40] -rw-------. 1 boincer umatlas   8714240 Nov 21 14:04 result.tar.gz
14:04:42 (549957): run_atlas exited; CPU time 326178.685251
14:04:42 (549957): called boinc_finish(0)

</stderr_txt>
]]>

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