Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:15:33 (2382443): wrapper (7.7.26015): starting
00:15:33 (2382443): wrapper: running run_atlas (--nthreads 11)
[2025-11-22 00:15:33] Arguments: --nthreads 11
[2025-11-22 00:15:33] Threads: 11
[2025-11-22 00:15:33] Checking for CVMFS
[2025-11-22 00:15:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:15:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:15:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:15:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:15:36] 2.13.3.0 9230 23723 319160 153161 3 150 22377759 32503808 25153 16776704 0 185261537 99.829 77612402 34436 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 00:15:36] CVMFS is ok
[2025-11-22 00:15:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:15:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:15:36] Further information can be found at the LHC@home message board.
[2025-11-22 00:15:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:15:36] Checking for apptainer binary...
[2025-11-22 00:15:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:15:36] Running /usr/bin/apptainer --version
[2025-11-22 00:15:36] apptainer version 1.4.4-1.el9
[2025-11-22 00:15:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:15:37] c-4-35.aglt2.org
[2025-11-22 00:15:37] apptainer works
[2025-11-22 00:15:37] Set ATHENA_PROC_NUMBER=11
[2025-11-22 00:15:37] Set ATHENA_CORE_NUMBER=11
[2025-11-22 00:15:37] Starting ATLAS job with PandaID=6893852276
[2025-11-22 00:15:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 16:02:26]  *** The last 200 lines of the pilot log: ***
[2025-11-23 16:02:26] 2025-11-23 21:01:21,513 | INFO     | monitor loop #6884: job 0:6893852276 is in state 'finished'
[2025-11-23 16:02:26] 2025-11-23 21:01:21,517 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:02:26] 2025-11-23 21:01:22,286 | INFO     | time since job start (143038s) is within the limit (172800.0s)
[2025-11-23 16:02:26] 2025-11-23 21:01:24,025 | INFO     | monitor loop #6885: job 0:6893852276 is in state 'finished'
[2025-11-23 16:02:26] 2025-11-23 21:01:24,025 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:02:26] 2025-11-23 21:01:25,896 | INFO     | PID=2390406 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 16:02:26] 2025-11-23 21:01:25,897 | INFO     | .. there are 42 such processes running
[2025-11-23 16:02:26] 2025-11-23 21:01:26,529 | INFO     | monitor loop #6886: job 0:6893852276 is in state 'finished'
[2025-11-23 16:02:26] 2025-11-23 21:01:26,529 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:02:26] 2025-11-23 21:01:26,898 | INFO     | time since job start (143042s) is within the limit (172800.0s)
[2025-11-23 16:02:26] 2025-11-23 21:01:28,912 | INFO     | time since job start (143044s) is within the limit (172800.0s)
[2025-11-23 16:02:26] 2025-11-23 21:01:29,045 | INFO     | monitor loop #6887: job 0:6893852276 is in state 'finished'
[2025-11-23 16:02:26] 2025-11-23 21:01:29,045 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:02:26] 2025-11-23 21:01:30,919 | INFO     | time since job start (143046s) is within the limit (172800.0s)
[2025-11-23 16:02:26] 2025-11-23 21:01:31,553 | INFO     | monitor loop #6888: job 0:6893852276 is in state 'finished'
[2025-11-23 16:02:26] 2025-11-23 21:01:31,554 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:02:26] 2025-11-23 21:01:32,050 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 16:02:26] 2025-11-23 21:01:32,144 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1872000000003
[2025-11-23 16:02:26] 2025-11-23 21:01:32,231 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893852276/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 16:02:26] 2025-11-23 21:01:32,231 | INFO     | extracted standard info from prmon json
[2025-11-23 16:02:26] 2025-11-23 21:01:32,232 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 16:02:26] 2025-11-23 21:01:32,232 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 16:02:26] 2025-11-23 21:01:32,782 | INFO     | fitting pss+swap vs Time
[2025-11-23 16:02:26] 2025-11-23 21:01:32,815 | INFO     | sum of square deviations: 3978125610282.848
[2025-11-23 16:02:26] 2025-11-23 21:01:32,931 | INFO     | time since job start (143048s) is within the limit (172800.0s)
[2025-11-23 16:02:26] 2025-11-23 21:01:32,972 | INFO     | sum of deviations: 16300674470571.44
[2025-11-23 16:02:26] 2025-11-23 21:01:32,973 | INFO     | mean x: 1763860243.646732
[2025-11-23 16:02:26] 2025-11-23 21:01:32,973 | INFO     | mean y: 3427670.11661683
[2025-11-23 16:02:26] 2025-11-23 21:01:32,973 | INFO     | intersect: -7224124815.644109
[2025-11-23 16:02:26] 2025-11-23 21:01:32,976 | INFO     | chi2: 30.17141512612316
[2025-11-23 16:02:26] 2025-11-23 21:01:32,979 | INFO     | sum of square deviations: 3952696032388.2197
[2025-11-23 16:02:26] 2025-11-23 21:01:33,108 | INFO     | sum of deviations: 17315278822271.748
[2025-11-23 16:02:26] 2025-11-23 21:01:33,109 | INFO     | mean x: 1763860091.1652398
[2025-11-23 16:02:26] 2025-11-23 21:01:33,109 | INFO     | mean y: 3433753.174229452
[2025-11-23 16:02:26] 2025-11-23 21:01:33,109 | INFO     | intersect: -7723375753.994089
[2025-11-23 16:02:26] 2025-11-23 21:01:33,112 | INFO     | chi2: 26.445882929439367
[2025-11-23 16:02:26] 2025-11-23 21:01:33,112 | INFO     | current chi2=26.445882929439367 (change=12.347886836299354 %)
[2025-11-23 16:02:26] 2025-11-23 21:01:33,112 | INFO     | right removable region: 2335
[2025-11-23 16:02:26] 2025-11-23 21:01:33,115 | INFO     | sum of square deviations: 3952683827341.549
[2025-11-23 16:02:26] 2025-11-23 21:01:33,304 | INFO     | sum of deviations: 15131656823082.748
[2025-11-23 16:02:26] 2025-11-23 21:01:33,305 | INFO     | mean x: 1763860396.1648116
[2025-11-23 16:02:26] 2025-11-23 21:01:33,305 | INFO     | mean y: 3434677.834332192
[2025-11-23 16:02:26] 2025-11-23 21:01:33,305 | INFO     | intersect: -6748972386.442209
[2025-11-23 16:02:26] 2025-11-23 21:01:33,308 | INFO     | chi2: 25.60548340542132
[2025-11-23 16:02:26] 2025-11-23 21:01:33,308 | INFO     | current chi2=25.60548340542132 (change=15.133303166640477 %)
[2025-11-23 16:02:26] 2025-11-23 21:01:33,308 | INFO     | left removable region: 10
[2025-11-23 16:02:26] 2025-11-23 21:01:33,311 | INFO     | sum of square deviations: 3897108540102.7705
[2025-11-23 16:02:26] 2025-11-23 21:01:33,487 | INFO     | sum of deviations: 15328362815089.656
[2025-11-23 16:02:26] 2025-11-23 21:01:33,488 | INFO     | mean x: 1763860365.7058065
[2025-11-23 16:02:26] 2025-11-23 21:01:33,488 | INFO     | mean y: 3447923.9264516127
[2025-11-23 16:02:26] 2025-11-23 21:01:33,488 | INFO     | intersect: -6934283310.005856
[2025-11-23 16:02:26] 2025-11-23 21:01:33,491 | INFO     | chi2: 18.034007233279265
[2025-11-23 16:02:26] 2025-11-23 21:01:33,492 | INFO     | current memory leak: 3.93 B/s (using 2325 data points, chi2=18.03)
[2025-11-23 16:02:26] 2025-11-23 21:01:33,494 | INFO     | could have reported an average CPU frequency of 2600 MHz (80 samples)
[2025-11-23 16:02:26] 2025-11-23 21:01:33,494 | INFO     | ..............................
[2025-11-23 16:02:26] 2025-11-23 21:01:33,494 | INFO     | . Timing measurements:
[2025-11-23 16:02:26] 2025-11-23 21:01:33,494 | INFO     | . get job = 1 s
[2025-11-23 16:02:26] 2025-11-23 21:01:33,494 | INFO     | . initial setup = 7 s
[2025-11-23 16:02:26] 2025-11-23 21:01:33,494 | INFO     | . payload setup = 66 s
[2025-11-23 16:02:26] 2025-11-23 21:01:33,494 | INFO     | . stage-in = 0 s
[2025-11-23 16:02:26] 2025-11-23 21:01:33,495 | INFO     | . payload execution = 142805 s
[2025-11-23 16:02:26] 2025-11-23 21:01:33,495 | INFO     | . stage-out = 16 s
[2025-11-23 16:02:26] 2025-11-23 21:01:33,495 | INFO     | . log creation = 7 s
[2025-11-23 16:02:26] 2025-11-23 21:01:33,495 | INFO     | ..............................
[2025-11-23 16:02:26] 2025-11-23 21:01:34,147 | INFO     | 
[2025-11-23 16:02:26] 2025-11-23 21:01:34,158 | INFO     | job summary report
[2025-11-23 16:02:26] 2025-11-23 21:01:34,158 | INFO     | --------------------------------------------------
[2025-11-23 16:02:26] 2025-11-23 21:01:34,158 | INFO     | PanDA job id: 6893852276
[2025-11-23 16:02:26] 2025-11-23 21:01:34,158 | INFO     | task id: 47523449
[2025-11-23 16:02:26] 2025-11-23 21:01:34,158 | INFO     | errors: (none)
[2025-11-23 16:02:26] 2025-11-23 21:01:34,158 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 16:02:26] 2025-11-23 21:01:34,158 | INFO     | pilot state: finished 
[2025-11-23 16:02:26] 2025-11-23 21:01:34,158 | INFO     | transexitcode: 0
[2025-11-23 16:02:26] 2025-11-23 21:01:34,158 | INFO     | exeerrorcode: 0
[2025-11-23 16:02:26] 2025-11-23 21:01:34,159 | INFO     | exeerrordiag: 
[2025-11-23 16:02:26] 2025-11-23 21:01:34,159 | INFO     | exitcode: 0
[2025-11-23 16:02:26] 2025-11-23 21:01:34,159 | INFO     | exitmsg: OK
[2025-11-23 16:02:26] 2025-11-23 21:01:34,159 | INFO     | cpuconsumptiontime: 295819 s
[2025-11-23 16:02:26] 2025-11-23 21:01:34,159 | INFO     | nevents: 1000
[2025-11-23 16:02:26] 2025-11-23 21:01:34,159 | INFO     | neventsw: 0
[2025-11-23 16:02:26] 2025-11-23 21:01:34,159 | INFO     | pid: 2412129
[2025-11-23 16:02:26] 2025-11-23 21:01:34,159 | INFO     | pgrp: 2412129
[2025-11-23 16:02:26] 2025-11-23 21:01:34,159 | INFO     | corecount: 11
[2025-11-23 16:02:26] 2025-11-23 21:01:34,159 | INFO     | event service: False
[2025-11-23 16:02:26] 2025-11-23 21:01:34,160 | INFO     | sizes: {0: 2298636, 1: 2298664, 2: 2298835, 14: 2298863, 25: 2298891, 36: 2298919, 47: 2299075, 50: 2299393, 60: 2299421, 142876: 2387491, 142893: 2396513, 142894:
[2025-11-23 16:02:26] 2025-11-23 21:01:34,160 | INFO     | --------------------------------------------------
[2025-11-23 16:02:26] 2025-11-23 21:01:34,160 | INFO     | 
[2025-11-23 16:02:26] 2025-11-23 21:01:34,160 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 16:02:26] 2025-11-23 21:01:34,234 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,234 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,234 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,234 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,234 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,234 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,235 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,235 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,235 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,235 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,235 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,235 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,235 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,235 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,235 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,235 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,236 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,236 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 16:02:26] 2025-11-23 21:01:34,236 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,236 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 16:02:26] 2025-11-23 21:01:34,236 | INFO     | job 6893852276 has completed (purged errors)
[2025-11-23 16:02:26] 2025-11-23 21:01:34,236 | INFO     | overall cleanup function is called
[2025-11-23 16:02:26] 2025-11-23 21:01:35,413 | INFO     | --- collectZombieJob: --- 10, [2412129]
[2025-11-23 16:02:26] 2025-11-23 21:01:35,413 | INFO     | zombie collector waiting for pid 2412129
[2025-11-23 16:02:26] 2025-11-23 21:01:35,413 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 16:02:26] 2025-11-23 21:01:35,414 | INFO     | collected zombie processes
[2025-11-23 16:02:26] 2025-11-23 21:01:35,414 | INFO     | will attempt to kill all subprocesses of pid=2412129
[2025-11-23 16:02:26] 2025-11-23 21:01:36,880 | INFO     | process IDs to be killed: [2412129] (in reverse order)
[2025-11-23 16:02:26] 2025-11-23 21:01:37,102 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 16:02:26] 2025-11-23 21:01:37,103 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 16:02:26] 2025-11-23 21:01:37,119 | INFO     | did not find any defunct processes belonging to 2412129
[2025-11-23 16:02:26] 2025-11-23 21:01:37,154 | INFO     | did not find any defunct processes belonging to 2412129
[2025-11-23 16:02:26] 2025-11-23 21:01:37,161 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 16:02:26] 2025-11-23 21:01:37,161 | INFO     | ready for new job
[2025-11-23 16:02:26] 2025-11-23 21:01:37,161 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 16:02:26] 2025-11-23 21:01:37,170 | INFO     | ***************************************
[2025-11-23 16:02:26] 2025-11-23 21:01:37,171 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 16:02:26] 2025-11-23 21:01:37,171 | INFO     | ***************************************
[2025-11-23 16:02:26] 2025-11-23 21:01:37,171 | INFO     | 
[2025-11-23 16:02:26] 2025-11-23 21:01:37,173 | INFO     | architecture information:
[2025-11-23 16:02:26] 2025-11-23 21:01:37,206 | INFO     | executing command: cat /etc/os-release
[2025-11-23 16:02:26] 2025-11-23 21:01:37,363 | INFO     | cat /etc/os-release:
[2025-11-23 16:02:26] NAME="CentOS Linux"
[2025-11-23 16:02:26] VERSION="7 (Core)"
[2025-11-23 16:02:26] ID="centos"
[2025-11-23 16:02:26] ID_LIKE="rhel fedora"
[2025-11-23 16:02:26] VERSION_ID="7"
[2025-11-23 16:02:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 16:02:26] ANSI_COLOR="0;31"
[2025-11-23 16:02:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 16:02:26] HOME_URL="https://www.centos.org/"
[2025-11-23 16:02:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 16:02:26] 
[2025-11-23 16:02:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 16:02:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 16:02:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 16:02:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 16:02:26] 
[2025-11-23 16:02:26] 2025-11-23 21:01:37,364 | INFO     | ***************************************
[2025-11-23 16:02:26] 2025-11-23 21:01:37,871 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 16:02:26] 2025-11-23 21:01:38,026 | INFO     | sufficient remaining disk space (93424975872 B)
[2025-11-23 16:02:26] 2025-11-23 21:01:38,027 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 16:02:26] 2025-11-23 21:01:38,036 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 16:02:26] 2025-11-23 21:01:38,036 | INFO     | update_server=False
[2025-11-23 16:02:26] 2025-11-23 21:01:38,037 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 16:02:26] 2025-11-23 21:01:38,038 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 16:02:26] 2025-11-23 21:01:38,038 | INFO     | aborting loop
[2025-11-23 16:02:26] 2025-11-23 21:01:38,043 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 16:02:26] 2025-11-23 21:01:38,622 | INFO     | all data control threads have been joined
[2025-11-23 16:02:26] 2025-11-23 21:01:38,824 | INFO     | all payload control threads have been joined
[2025-11-23 16:02:26] 2025-11-23 21:01:39,043 | INFO     | [job] retrieve thread has finished
[2025-11-23 16:02:26] 2025-11-23 21:01:39,048 | INFO     | [job] job monitor thread has finished
[2025-11-23 16:02:26] 2025-11-23 21:01:39,074 | INFO     | [data] copytool_in thread has finished
[2025-11-23 16:02:26] 2025-11-23 21:01:39,122 | INFO     | [payload] failed_post thread has finished
[2025-11-23 16:02:26] 2025-11-23 21:01:39,166 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 16:02:26] 2025-11-23 21:01:39,232 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 16:02:26] 2025-11-23 21:01:39,449 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 16:02:26] 2025-11-23 21:01:39,514 | INFO     | [payload] validate_post thread has finished
[2025-11-23 16:02:26] 2025-11-23 21:01:39,539 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 16:02:26] 2025-11-23 21:01:39,553 | INFO     | all job control threads have been joined
[2025-11-23 16:02:26] 2025-11-23 21:01:39,628 | INFO     | [data] control thread has finished
[2025-11-23 16:02:26] 2025-11-23 21:01:39,830 | INFO     | [payload] control thread has finished
[2025-11-23 16:02:26] 2025-11-23 21:01:40,174 | INFO     | [job] queue monitor thread has finished
[2025-11-23 16:02:26] 2025-11-23 21:01:40,341 | INFO     | [job] validate thread has finished
[2025-11-23 16:02:26] 2025-11-23 21:01:40,512 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 16:02:26] 2025-11-23 21:01:40,522 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 16:02:26] 2025-11-23 21:01:40,559 | INFO     | [job] control thread has finished
[2025-11-23 16:02:26] 2025-11-23 21:01:41,239 | INFO     | [data] copytool_out thread has finished
[2025-11-23 16:02:26] 2025-11-23 21:01:42,051 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 16:02:26] 2025-11-23 21:02:06,610 | INFO     | PID=2390406 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 16:02:26] 2025-11-23 21:02:06,610 | INFO     | .. there are 42 such processes running
[2025-11-23 16:02:26] 2025-11-23 21:02:06,610 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 16:02:26] 2025-11-23 21:02:06,610 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 16:02:26] 2025-11-23 21:02:06,611 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 16:02:26] 2025-11-23 21:02:18,665 | INFO     | [monitor] cgroup control has ended
[2025-11-23 16:02:26] 2025-11-23 21:02:19,693 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139886841288512)>', '<ExcThread(monitor, started 139886212413184)>']
[2025-11-23 16:02:26] 2025-11-23 21:02:19,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 16:02:26] 2025-11-23 21:02:19,706 | INFO     | [monitor] control thread has ended
[2025-11-23 16:02:26] 2025-11-23 21:02:24,719 | INFO     | all workflow threads have been joined
[2025-11-23 16:02:26] 2025-11-23 21:02:24,719 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 16:02:26] 2025-11-23 21:02:24,720 | INFO     | traces error code: 0
[2025-11-23 16:02:26] 2025-11-23 21:02:24,720 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 16:02:26] 2025-11-23 21:02:25,030 [wrapper] ==== pilot stdout END ====
[2025-11-23 16:02:26] 2025-11-23 21:02:25,049 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 16:02:26] 2025-11-23 21:02:25,072 [wrapper] pilotpid: 2390406
[2025-11-23 16:02:26] 2025-11-23 21:02:25,090 [wrapper] Pilot exit status: 0
[2025-11-23 16:02:26] 2025-11-23 21:02:25,266 [wrapper] pandaids: 6893852276
[2025-11-23 16:02:26] 2025-11-23 21:02:25,536 [wrapper] cleanup supervisor_pilot 2341499 2390407
[2025-11-23 16:02:26] 2025-11-23 21:02:25,637 [wrapper] Test setup, not cleaning
[2025-11-23 16:02:26] 2025-11-23 21:02:25,738 [wrapper] apfmon messages muted
[2025-11-23 16:02:26] 2025-11-23 21:02:25,797 [wrapper] ==== wrapper stdout END ====
[2025-11-23 16:02:26] 2025-11-23 21:02:25,914 [wrapper] ==== wrapper stderr END ====
[2025-11-23 16:02:26]  *** Error codes and diagnostics ***
[2025-11-23 16:02:26]     "exeErrorCode": 0,
[2025-11-23 16:02:26]     "exeErrorDiag": "",
[2025-11-23 16:02:26]     "pilotErrorCode": 0,
[2025-11-23 16:02:26]     "pilotErrorDiag": "",
[2025-11-23 16:02:26]  *** Listing of results directory ***
[2025-11-23 16:02:26] total 1328464
[2025-11-23 16:02:26] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 06:54 pilot3.tar.gz
[2025-11-23 16:02:26] -rwx------. 1 boincer umatlas     36292 Nov 20 06:56 runpilot2-wrapper.sh
[2025-11-23 16:02:26] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 06:56 queuedata.json
[2025-11-23 16:02:26] -rw-r--r--. 1 boincer umatlas       100 Nov 22 00:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 16:02:26] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 00:15 run_atlas
[2025-11-23 16:02:26] -rw-r--r--. 1 boincer umatlas       105 Nov 22 00:15 job.xml
[2025-11-23 16:02:26] -rw-r--r--. 2 boincer umatlas 409221205 Nov 22 00:15 EVNT.47493127._000376.pool.root.1
[2025-11-23 16:02:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:15 start_atlas.sh
[2025-11-23 16:02:26] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 00:15 shared
[2025-11-23 16:02:26] -rw-r--r--. 2 boincer umatlas    590101 Nov 22 00:15 input.tar.gz
[2025-11-23 16:02:26] -rw-r--r--. 1 boincer umatlas         0 Nov 22 00:15 boinc_lockfile
[2025-11-23 16:02:26] -rw-r--r--. 1 boincer umatlas      2786 Nov 22 00:15 pandaJob.out
[2025-11-23 16:02:26] -rw-------. 1 boincer umatlas        57 Nov 22 00:15 setup.sh.local
[2025-11-23 16:02:26] -rw-------. 1 boincer umatlas    989752 Nov 22 00:17 agis_schedconf.cvmfs.json
[2025-11-23 16:02:26] drwx------. 5 boincer umatlas      4096 Nov 22 00:17 pilot3
[2025-11-23 16:02:26] -rw-r--r--. 1 boincer umatlas       533 Nov 23 15:27 boinc_task_state.xml
[2025-11-23 16:02:26] -rw-r--r--. 1 boincer umatlas      6660 Nov 23 15:57 init_data.xml
[2025-11-23 16:02:26] -rw-------. 1 boincer umatlas 908833696 Nov 23 15:58 HITS.47523449._003755.pool.root.1
[2025-11-23 16:02:26] -rw-------. 1 boincer umatlas      1067 Nov 23 16:00 memory_monitor_summary.json
[2025-11-23 16:02:26] -rw-------. 1 boincer umatlas   1526164 Nov 23 16:00 agis_ddmendpoints.agis.ALL.json
[2025-11-23 16:02:26] -rw-------. 1 boincer umatlas   3307979 Nov 23 16:00 log.47523449._003755.job.log.tgz.1
[2025-11-23 16:02:26] -rw-------. 1 boincer umatlas        95 Nov 23 16:01 pilot_heartbeat.json
[2025-11-23 16:02:26] -rw-------. 1 boincer umatlas      8632 Nov 23 16:01 heartbeat.json
[2025-11-23 16:02:26] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 16:02 boinc_mmap_file
[2025-11-23 16:02:26] -rw-r--r--. 1 boincer umatlas        29 Nov 23 16:02 wrapper_checkpoint.txt
[2025-11-23 16:02:26] -rw-------. 1 boincer umatlas      4824 Nov 23 16:02 pilotlog.txt
[2025-11-23 16:02:26] -rw-------. 1 boincer umatlas  15876921 Nov 23 16:02 log.47523449._003755.job.log.1
[2025-11-23 16:02:26] -rw-------. 1 boincer umatlas       353 Nov 23 16:02 output.list
[2025-11-23 16:02:26] -rw-r--r--. 1 boincer umatlas       620 Nov 23 16:02 runtime_log
[2025-11-23 16:02:26] -rw-------. 1 boincer umatlas  19200000 Nov 23 16:02 result.tar.gz
[2025-11-23 16:02:26] -rw-r--r--. 1 boincer umatlas      9336 Nov 23 16:02 runtime_log.err
[2025-11-23 16:02:26] -rw-------. 1 boincer umatlas       663 Nov 23 16:02 pEuNDmqRIg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5ZGKDme6Zxbn.diag
[2025-11-23 16:02:26] -rw-r--r--. 1 boincer umatlas     21907 Nov 23 16:02 stderr.txt
[2025-11-23 16:02:26] HITS file was successfully produced:
[2025-11-23 16:02:27] -rw-------. 1 boincer umatlas 908833696 Nov 23 15:58 shared/HITS.pool.root.1
[2025-11-23 16:02:27]  *** Contents of shared directory: ***
[2025-11-23 16:02:27] total 1306520
[2025-11-23 16:02:27] -rw-r--r--. 2 boincer umatlas 409221205 Nov 22 00:15 ATLAS.root_0
[2025-11-23 16:02:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:15 start_atlas.sh
[2025-11-23 16:02:27] -rw-r--r--. 2 boincer umatlas    590101 Nov 22 00:15 input.tar.gz
[2025-11-23 16:02:27] -rw-------. 1 boincer umatlas 908833696 Nov 23 15:58 HITS.pool.root.1
[2025-11-23 16:02:27] -rw-------. 1 boincer umatlas  19200000 Nov 23 16:02 result.tar.gz
16:02:28 (2382443): run_atlas exited; CPU time 299365.245297
16:02:28 (2382443): called boinc_finish(0)

</stderr_txt>
]]>

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