Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
21:51:48 (1894285): wrapper (7.7.26015): starting
21:51:48 (1894285): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 21:51:48] Arguments: --nthreads 8
[2025-11-21 21:51:48] Threads: 8
[2025-11-21 21:51:48] Checking for CVMFS
[2025-11-21 21:51:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:51:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:51:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:51:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:51:53] 2.13.3.0 4524 1549 58224 153161 0 90 1391089 4096000 10364 130560 0 172549807 99.996 563646 849 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-11-21 21:51:53] CVMFS is ok
[2025-11-21 21:51:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 21:51:53] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-21 21:51:53] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-21 21:51:53] Further information can be found at the LHC@home message board.
[2025-11-21 21:51:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:51:53] Checking for apptainer binary...
[2025-11-21 21:51:53] apptainer is not installed, using version from CVMFS
[2025-11-21 21:51:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:51:53] 7950x-linux
[2025-11-21 21:51:53] apptainer works
[2025-11-21 21:51:53] Set ATHENA_PROC_NUMBER=8
[2025-11-21 21:51:53] Set ATHENA_CORE_NUMBER=8
[2025-11-21 21:51:53] Starting ATLAS job with PandaID=6894238047
[2025-11-21 21:51:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc503/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 20:00:48]  *** The last 200 lines of the pilot log: ***
[2025-11-22 20:00:48] 2025-11-23 03:59:40,298 | INFO     | time since job start (79632s) is within the limit (172800.0s)
[2025-11-22 20:00:48] 2025-11-23 03:59:40,459 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 20:00:48] 2025-11-23 03:59:40,459 | INFO     | job 6894238047 has state=finished
[2025-11-22 20:00:48] 2025-11-23 03:59:40,459 | INFO     | preparing for final server update for job 6894238047 in state='finished'
[2025-11-22 20:00:48] 2025-11-23 03:59:40,461 | INFO     | this job has now completed (state=finished)
[2025-11-22 20:00:48] 2025-11-23 03:59:40,461 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-22 20:00:48] 2025-11-23 03:59:40,461 | INFO     | log transfer has been attempted: DONE
[2025-11-22 20:00:48] 2025-11-23 03:59:40,461 | INFO     | job 6894238047 has finished - writing final server update
[2025-11-22 20:00:48] 2025-11-23 03:59:40,461 | INFO     | total number of processed events: 1000 (read)
[2025-11-22 20:00:48] 2025-11-23 03:59:40,462 | INFO     | executing command: lscpu
[2025-11-22 20:00:48] 2025-11-23 03:59:40,486 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-22 20:00:48] 2025-11-23 03:59:41,560 | INFO     | monitor loop #5586: job 0:6894238047 is in state 'finished'
[2025-11-22 20:00:48] 2025-11-23 03:59:41,561 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:00:48] 2025-11-23 03:59:42,303 | INFO     | time since job start (79634s) is within the limit (172800.0s)
[2025-11-22 20:00:48] 2025-11-23 03:59:44,063 | INFO     | monitor loop #5587: job 0:6894238047 is in state 'finished'
[2025-11-22 20:00:48] 2025-11-23 03:59:44,064 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:00:48] 2025-11-23 03:59:44,308 | INFO     | time since job start (79636s) is within the limit (172800.0s)
[2025-11-22 20:00:48] 2025-11-23 03:59:44,640 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 20:00:48] 2025-11-23 03:59:44,646 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3999.862375
[2025-11-22 20:00:48] 2025-11-23 03:59:44,652 | INFO     | using path: /var/lib/multiboinc/boinc503/slots/2/PanDA_Pilot-6894238047/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 20:00:48] 2025-11-23 03:59:44,653 | INFO     | extracted standard info from prmon json
[2025-11-22 20:00:48] 2025-11-23 03:59:44,653 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 20:00:48] 2025-11-23 03:59:44,653 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 20:00:48] 2025-11-23 03:59:44,670 | INFO     | fitting pss+swap vs Time
[2025-11-22 20:00:48] 2025-11-23 03:59:44,671 | INFO     | sum of square deviations: 689143563060.0
[2025-11-22 20:00:48] 2025-11-23 03:59:44,699 | INFO     | sum of deviations: 10059133593338.998
[2025-11-22 20:00:48] 2025-11-23 03:59:44,699 | INFO     | mean x: 1763830552.0
[2025-11-22 20:00:48] 2025-11-23 03:59:44,699 | INFO     | mean y: 3557981.1348659005
[2025-11-22 20:00:48] 2025-11-23 03:59:44,699 | INFO     | intersect: -25742321556.35726
[2025-11-22 20:00:48] 2025-11-23 03:59:44,700 | INFO     | chi2: 15.006787211931282
[2025-11-22 20:00:48] 2025-11-23 03:59:44,704 | INFO     | sum of square deviations: 681252680225.0
[2025-11-22 20:00:48] 2025-11-23 03:59:44,731 | INFO     | sum of deviations: 10526085037710.002
[2025-11-22 20:00:48] 2025-11-23 03:59:44,731 | INFO     | mean x: 1763830399.5
[2025-11-22 20:00:48] 2025-11-23 03:59:44,731 | INFO     | mean y: 3567001.7876923075
[2025-11-22 20:00:48] 2025-11-23 03:59:44,731 | INFO     | intersect: -27249505633.615467
[2025-11-22 20:00:48] 2025-11-23 03:59:44,735 | INFO     | chi2: 12.268455907076302
[2025-11-22 20:00:48] 2025-11-23 03:59:44,735 | INFO     | current chi2=12.268455907076302 (change=18.247285486115548 %)
[2025-11-22 20:00:48] 2025-11-23 03:59:44,735 | INFO     | right removable region: 1299
[2025-11-22 20:00:48] 2025-11-23 03:59:44,735 | INFO     | sum of square deviations: 681252680225.0
[2025-11-22 20:00:48] 2025-11-23 03:59:44,763 | INFO     | sum of deviations: 9539058567208.5
[2025-11-22 20:00:48] 2025-11-23 03:59:44,763 | INFO     | mean x: 1763830704.5
[2025-11-22 20:00:48] 2025-11-23 03:59:44,763 | INFO     | mean y: 3568026.4915384618
[2025-11-22 20:00:48] 2025-11-23 03:59:44,763 | INFO     | intersect: -24693999970.318657
[2025-11-22 20:00:48] 2025-11-23 03:59:44,764 | INFO     | chi2: 12.402406279955981
[2025-11-22 20:00:48] 2025-11-23 03:59:44,764 | INFO     | current chi2=12.402406279955981 (change=17.354686883976502 %)
[2025-11-22 20:00:48] 2025-11-23 03:59:44,764 | INFO     | left removable region: 10
[2025-11-22 20:00:48] 2025-11-23 03:59:44,765 | INFO     | sum of square deviations: 664105251740.0
[2025-11-22 20:00:48] 2025-11-23 03:59:44,790 | INFO     | sum of deviations: 9813681191147.0
[2025-11-22 20:00:48] 2025-11-23 03:59:44,790 | INFO     | mean x: 1763830674.0
[2025-11-22 20:00:48] 2025-11-23 03:59:44,790 | INFO     | mean y: 3583583.7695888286
[2025-11-22 20:00:48] 2025-11-23 03:59:44,791 | INFO     | intersect: -26061067861.84004
[2025-11-22 20:00:48] 2025-11-23 03:59:44,791 | INFO     | chi2: 9.032216143827252
[2025-11-22 20:00:48] 2025-11-23 03:59:44,791 | INFO     | current memory leak: 14.78 B/s (using 1289 data points, chi2=9.03)
[2025-11-22 20:00:48] 2025-11-23 03:59:44,792 | INFO     | could have reported an average CPU frequency of 3999 MHz (47 samples)
[2025-11-22 20:00:48] 2025-11-23 03:59:44,792 | INFO     | ..............................
[2025-11-22 20:00:48] 2025-11-23 03:59:44,792 | INFO     | . Timing measurements:
[2025-11-22 20:00:48] 2025-11-23 03:59:44,792 | INFO     | . get job = 0 s
[2025-11-22 20:00:48] 2025-11-23 03:59:44,792 | INFO     | . initial setup = 8 s
[2025-11-22 20:00:48] 2025-11-23 03:59:44,792 | INFO     | . payload setup = 8 s
[2025-11-22 20:00:48] 2025-11-23 03:59:44,792 | INFO     | . stage-in = 0 s
[2025-11-22 20:00:48] 2025-11-23 03:59:44,792 | INFO     | . payload execution = 79595 s
[2025-11-22 20:00:48] 2025-11-23 03:59:44,792 | INFO     | . stage-out = 4 s
[2025-11-22 20:00:48] 2025-11-23 03:59:44,792 | INFO     | . log creation = 0 s
[2025-11-22 20:00:48] 2025-11-23 03:59:44,792 | INFO     | ..............................
[2025-11-22 20:00:48] 2025-11-23 03:59:44,867 | INFO     | 
[2025-11-22 20:00:48] 2025-11-23 03:59:44,867 | INFO     | job summary report
[2025-11-22 20:00:48] 2025-11-23 03:59:44,867 | INFO     | --------------------------------------------------
[2025-11-22 20:00:48] 2025-11-23 03:59:44,867 | INFO     | PanDA job id: 6894238047
[2025-11-22 20:00:48] 2025-11-23 03:59:44,867 | INFO     | task id: 47533967
[2025-11-22 20:00:48] 2025-11-23 03:59:44,867 | INFO     | errors: (none)
[2025-11-22 20:00:48] 2025-11-23 03:59:44,867 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 20:00:48] 2025-11-23 03:59:44,868 | INFO     | pilot state: finished 
[2025-11-22 20:00:48] 2025-11-23 03:59:44,868 | INFO     | transexitcode: 0
[2025-11-22 20:00:48] 2025-11-23 03:59:44,868 | INFO     | exeerrorcode: 0
[2025-11-22 20:00:48] 2025-11-23 03:59:44,868 | INFO     | exeerrordiag: 
[2025-11-22 20:00:48] 2025-11-23 03:59:44,868 | INFO     | exitcode: 0
[2025-11-22 20:00:48] 2025-11-23 03:59:44,868 | INFO     | exitmsg: OK
[2025-11-22 20:00:48] 2025-11-23 03:59:44,868 | INFO     | cpuconsumptiontime: 135740 s
[2025-11-22 20:00:48] 2025-11-23 03:59:44,868 | INFO     | nevents: 1000
[2025-11-22 20:00:48] 2025-11-23 03:59:44,868 | INFO     | neventsw: 0
[2025-11-22 20:00:48] 2025-11-23 03:59:44,868 | INFO     | pid: 2033282
[2025-11-22 20:00:48] 2025-11-23 03:59:44,868 | INFO     | pgrp: 2033282
[2025-11-22 20:00:48] 2025-11-23 03:59:44,868 | INFO     | corecount: 8
[2025-11-22 20:00:48] 2025-11-23 03:59:44,868 | INFO     | event service: False
[2025-11-22 20:00:48] 2025-11-23 03:59:44,868 | INFO     | sizes: {0: 2298819, 5: 2299081, 11: 2299137, 79607: 2361758, 79612: 2370780, 79613: 2370836, 79619: 2371210}
[2025-11-22 20:00:48] 2025-11-23 03:59:44,868 | INFO     | --------------------------------------------------
[2025-11-22 20:00:48] 2025-11-23 03:59:44,868 | INFO     | 
[2025-11-22 20:00:48] 2025-11-23 03:59:44,868 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc503/slots/2
[2025-11-22 20:00:48] 2025-11-23 03:59:44,883 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,883 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,883 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,883 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,883 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,883 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,883 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,883 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,883 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,883 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,883 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,883 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,883 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,883 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,883 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,883 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,883 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,884 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 20:00:48] 2025-11-23 03:59:44,884 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,884 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 20:00:48] 2025-11-23 03:59:44,884 | INFO     | job 6894238047 has completed (purged errors)
[2025-11-22 20:00:48] 2025-11-23 03:59:44,884 | INFO     | overall cleanup function is called
[2025-11-22 20:00:48] 2025-11-23 03:59:45,898 | INFO     | --- collectZombieJob: --- 10, [2033282]
[2025-11-22 20:00:48] 2025-11-23 03:59:45,899 | INFO     | zombie collector waiting for pid 2033282
[2025-11-22 20:00:48] 2025-11-23 03:59:45,899 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 20:00:48] 2025-11-23 03:59:45,899 | INFO     | collected zombie processes
[2025-11-22 20:00:48] 2025-11-23 03:59:45,899 | INFO     | will attempt to kill all subprocesses of pid=2033282
[2025-11-22 20:00:48] 2025-11-23 03:59:46,299 | INFO     | process IDs to be killed: [2033282] (in reverse order)
[2025-11-22 20:00:48] 2025-11-23 03:59:46,425 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 20:00:48] 2025-11-23 03:59:46,425 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 20:00:48] 2025-11-23 03:59:46,441 | INFO     | did not find any defunct processes belonging to 2033282
[2025-11-22 20:00:48] 2025-11-23 03:59:46,449 | INFO     | did not find any defunct processes belonging to 2033282
[2025-11-22 20:00:48] 2025-11-23 03:59:46,451 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 20:00:48] 2025-11-23 03:59:46,451 | INFO     | ready for new job
[2025-11-22 20:00:48] 2025-11-23 03:59:46,451 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 20:00:48] 2025-11-23 03:59:46,460 | INFO     | ***************************************
[2025-11-22 20:00:48] 2025-11-23 03:59:46,460 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 20:00:48] 2025-11-23 03:59:46,460 | INFO     | ***************************************
[2025-11-22 20:00:48] 2025-11-23 03:59:46,460 | INFO     | 
[2025-11-22 20:00:48] 2025-11-23 03:59:46,461 | INFO     | architecture information:
[2025-11-22 20:00:48] 2025-11-23 03:59:46,461 | INFO     | executing command: cat /etc/os-release
[2025-11-22 20:00:48] 2025-11-23 03:59:46,476 | INFO     | cat /etc/os-release:
[2025-11-22 20:00:48] NAME="CentOS Linux"
[2025-11-22 20:00:48] VERSION="7 (Core)"
[2025-11-22 20:00:48] ID="centos"
[2025-11-22 20:00:48] ID_LIKE="rhel fedora"
[2025-11-22 20:00:48] VERSION_ID="7"
[2025-11-22 20:00:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 20:00:48] ANSI_COLOR="0;31"
[2025-11-22 20:00:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 20:00:48] HOME_URL="https://www.centos.org/"
[2025-11-22 20:00:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 20:00:48] 
[2025-11-22 20:00:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 20:00:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 20:00:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 20:00:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 20:00:48] 
[2025-11-22 20:00:48] 2025-11-23 03:59:46,476 | INFO     | ***************************************
[2025-11-22 20:00:48] 2025-11-23 03:59:46,978 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc503/slots/2
[2025-11-22 20:00:48] 2025-11-23 03:59:47,005 | INFO     | sufficient remaining disk space (180172619776 B)
[2025-11-22 20:00:48] 2025-11-23 03:59:47,005 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 20:00:48] 2025-11-23 03:59:47,005 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 20:00:48] 2025-11-23 03:59:47,005 | INFO     | update_server=False
[2025-11-22 20:00:48] 2025-11-23 03:59:47,005 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 20:00:48] 2025-11-23 03:59:47,005 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 20:00:48] 2025-11-23 03:59:47,273 | INFO     | all payload control threads have been joined
[2025-11-22 20:00:48] 2025-11-23 03:59:47,571 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:00:48] 2025-11-23 03:59:47,572 | INFO     | aborting loop
[2025-11-22 20:00:48] 2025-11-23 03:59:47,604 | INFO     | all data control threads have been joined
[2025-11-22 20:00:48] 2025-11-23 03:59:48,009 | INFO     | [job] retrieve thread has finished
[2025-11-22 20:00:48] 2025-11-23 03:59:48,033 | INFO     | all job control threads have been joined
[2025-11-22 20:00:48] 2025-11-23 03:59:48,233 | INFO     | [payload] validate_post thread has finished
[2025-11-22 20:00:48] 2025-11-23 03:59:48,266 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 20:00:48] 2025-11-23 03:59:48,278 | INFO     | [payload] control thread has finished
[2025-11-22 20:00:48] 2025-11-23 03:59:48,370 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 20:00:48] 2025-11-23 03:59:48,576 | INFO     | [job] job monitor thread has finished
[2025-11-22 20:00:48] 2025-11-23 03:59:48,609 | INFO     | [data] control thread has finished
[2025-11-22 20:00:48] 2025-11-23 03:59:48,753 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 20:00:48] 2025-11-23 03:59:48,934 | INFO     | [payload] failed_post thread has finished
[2025-11-22 20:00:48] 2025-11-23 03:59:49,010 | INFO     | [data] copytool_out thread has finished
[2025-11-22 20:00:48] 2025-11-23 03:59:49,038 | INFO     | [job] control thread has finished
[2025-11-22 20:00:48] 2025-11-23 03:59:49,155 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 20:00:48] 2025-11-23 03:59:49,208 | INFO     | [data] copytool_in thread has finished
[2025-11-22 20:00:48] 2025-11-23 03:59:49,509 | INFO     | [job] validate thread has finished
[2025-11-22 20:00:48] 2025-11-23 03:59:49,878 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:00:48] 2025-11-23 03:59:49,884 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 20:00:48] 2025-11-23 03:59:50,883 | INFO     | [job] queue monitor thread has finished
[2025-11-22 20:00:48] 2025-11-23 03:59:53,889 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 20:00:48] 2025-11-23 04:00:17,655 | INFO     | PID=1932859 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 20:00:48] 2025-11-23 04:00:17,656 | INFO     | .. there are 12 such processes running
[2025-11-22 20:00:48] 2025-11-23 04:00:17,656 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 20:00:48] 2025-11-23 04:00:17,656 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 20:00:48] 2025-11-23 04:00:17,656 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 20:00:48] 2025-11-23 04:00:40,923 | INFO     | [monitor] cgroup control has ended
[2025-11-22 20:00:48] 2025-11-23 04:00:42,756 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137489470953280)>', '<ExcThread(monitor, started 137488597243648)>']
[2025-11-22 20:00:48] 2025-11-23 04:00:42,782 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 20:00:48] 2025-11-23 04:00:42,783 | INFO     | [monitor] control thread has ended
[2025-11-22 20:00:48] 2025-11-23 04:00:47,781 | INFO     | all workflow threads have been joined
[2025-11-22 20:00:48] 2025-11-23 04:00:47,782 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 20:00:48] 2025-11-23 04:00:47,782 | INFO     | traces error code: 0
[2025-11-22 20:00:48] 2025-11-23 04:00:47,782 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 20:00:48] 2025-11-23 04:00:47,891 [wrapper] ==== pilot stdout END ====
[2025-11-22 20:00:48] 2025-11-23 04:00:47,892 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 20:00:48] 2025-11-23 04:00:47,894 [wrapper] pilotpid: 1932859
[2025-11-22 20:00:48] 2025-11-23 04:00:47,899 [wrapper] Pilot exit status: 0
[2025-11-22 20:00:48] 2025-11-23 04:00:47,905 [wrapper] pandaids: 6894238047
[2025-11-22 20:00:48] 2025-11-23 04:00:47,954 [wrapper] cleanup supervisor_pilot 4065137 1932860
[2025-11-22 20:00:48] 2025-11-23 04:00:47,956 [wrapper] Test setup, not cleaning
[2025-11-22 20:00:48] 2025-11-23 04:00:47,958 [wrapper] apfmon messages muted
[2025-11-22 20:00:48] 2025-11-23 04:00:47,960 [wrapper] ==== wrapper stdout END ====
[2025-11-22 20:00:48] 2025-11-23 04:00:47,961 [wrapper] ==== wrapper stderr END ====
[2025-11-22 20:00:48]  *** Error codes and diagnostics ***
[2025-11-22 20:00:48]     "exeErrorCode": 0,
[2025-11-22 20:00:48]     "exeErrorDiag": "",
[2025-11-22 20:00:48]     "pilotErrorCode": 0,
[2025-11-22 20:00:48]     "pilotErrorDiag": "",
[2025-11-22 20:00:48]  *** Listing of results directory ***
[2025-11-22 20:00:48] total 1325296
[2025-11-22 20:00:48] -rw-r--r-- 1 root root    576529 Nov 20 16:06 pilot3.tar.gz
[2025-11-22 20:00:48] -rwx------ 1 4871 1028     36292 Nov 20 16:19 runpilot2-wrapper.sh
[2025-11-22 20:00:48] -rw-r--r-- 1 root root      5112 Nov 20 16:19 queuedata.json
[2025-11-22 20:00:48] -rw-r--r-- 1 root root       100 Nov 21 21:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 20:00:48] -rwxr-xr-x 1 root root      7986 Nov 21 21:51 run_atlas
[2025-11-22 20:00:48] -rw-r--r-- 1 root root       105 Nov 21 21:51 job.xml
[2025-11-22 20:00:48] -rw-r--r-- 1 root root      7071 Nov 21 21:51 init_data.xml
[2025-11-22 20:00:48] -rw-r--r-- 2 root root 409717753 Nov 21 21:51 EVNT.47493127._002042.pool.root.1
[2025-11-22 20:00:48] drwxrwx--x 2 root root      4096 Nov 21 21:51 shared
[2025-11-22 20:00:48] -rw-r--r-- 2 root root    590096 Nov 21 21:51 input.tar.gz
[2025-11-22 20:00:48] -rw-r--r-- 2 root root     15847 Nov 21 21:51 start_atlas.sh
[2025-11-22 20:00:48] -rw-r--r-- 1 root root         0 Nov 21 21:51 boinc_lockfile
[2025-11-22 20:00:48] -rw-r--r-- 1 root root      2785 Nov 21 21:51 pandaJob.out
[2025-11-22 20:00:48] -rw------- 1 root root    989752 Nov 21 21:52 agis_schedconf.cvmfs.json
[2025-11-22 20:00:48] drwxr-xr-x 5  320  320      4096 Nov 21 21:52 pilot3
[2025-11-22 20:00:48] -rw-r--r-- 1 root root       533 Nov 22 19:47 boinc_task_state.xml
[2025-11-22 20:00:48] -rw------- 1 root root 916470295 Nov 22 19:59 HITS.47533967._000132.pool.root.1
[2025-11-22 20:00:48] -rw------- 1 root root      1066 Nov 22 19:59 memory_monitor_summary.json
[2025-11-22 20:00:48] -rw------- 1 root root   1526164 Nov 22 19:59 agis_ddmendpoints.agis.ALL.json
[2025-11-22 20:00:48] -rw------- 1 root root   2378611 Nov 22 19:59 log.47533967._000132.job.log.tgz.1
[2025-11-22 20:00:48] -rw------- 1 root root      8621 Nov 22 19:59 heartbeat.json
[2025-11-22 20:00:48] -rw------- 1 root root        95 Nov 22 20:00 pilot_heartbeat.json
[2025-11-22 20:00:48] -rw-r--r-- 1 root root      8192 Nov 22 20:00 boinc_mmap_file
[2025-11-22 20:00:48] -rw-r--r-- 1 root root        29 Nov 22 20:00 wrapper_checkpoint.txt
[2025-11-22 20:00:48] -rw------- 1 root root      4839 Nov 22 20:00 pilotlog.txt
[2025-11-22 20:00:48] -rw------- 1 root root  11116857 Nov 22 20:00 log.47533967._000132.job.log.1
[2025-11-22 20:00:48] -rw------- 1 root root       353 Nov 22 20:00 output.list
[2025-11-22 20:00:48] -rw-r--r-- 1 root root       620 Nov 22 20:00 runtime_log
[2025-11-22 20:00:48] -rw------- 1 root root  13516800 Nov 22 20:00 result.tar.gz
[2025-11-22 20:00:48] -rw-r--r-- 1 root root      9019 Nov 22 20:00 runtime_log.err
[2025-11-22 20:00:48] -rw------- 1 root root       664 Nov 22 20:00 ieMNDmJ3Tg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8iIKDmiwl5Ym.diag
[2025-11-22 20:00:48] -rw-r--r-- 1 root root     21905 Nov 22 20:00 stderr.txt
[2025-11-22 20:00:48] HITS file was successfully produced:
[2025-11-22 20:00:48] -rw------- 1 root root 916470295 Nov 22 19:59 shared/HITS.pool.root.1
[2025-11-22 20:00:48]  *** Contents of shared directory: ***
[2025-11-22 20:00:48] total 1308912
[2025-11-22 20:00:48] -rw-r--r-- 2 root root 409717753 Nov 21 21:51 ATLAS.root_0
[2025-11-22 20:00:48] -rw-r--r-- 2 root root    590096 Nov 21 21:51 input.tar.gz
[2025-11-22 20:00:48] -rw-r--r-- 2 root root     15847 Nov 21 21:51 start_atlas.sh
[2025-11-22 20:00:48] -rw------- 1 root root 916470295 Nov 22 19:59 HITS.pool.root.1
[2025-11-22 20:00:48] -rw------- 1 root root  13516800 Nov 22 20:00 result.tar.gz
20:00:49 (1894285): run_atlas exited; CPU time 136383.568691
20:00:49 (1894285): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN