Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
21:51:52 (1895297): wrapper (7.7.26015): starting
21:51:52 (1895297): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 21:51:52] Arguments: --nthreads 8
[2025-11-21 21:51:52] Threads: 8
[2025-11-21 21:51:52] Checking for CVMFS
[2025-11-21 21:51:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:51:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:51:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:51:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:51:55] 2.13.3.0 4524 1549 58224 153161 0 90 1391089 4096000 10511 130560 0 172553058 99.996 563646 849 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-11-21 21:51:55] CVMFS is ok
[2025-11-21 21:51:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 21:51:55] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-21 21:51:55] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-21 21:51:55] Further information can be found at the LHC@home message board.
[2025-11-21 21:51:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:51:55] Checking for apptainer binary...
[2025-11-21 21:51:55] apptainer is not installed, using version from CVMFS
[2025-11-21 21:51:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:51:55] 7950x-linux
[2025-11-21 21:51:55] apptainer works
[2025-11-21 21:51:55] Set ATHENA_PROC_NUMBER=8
[2025-11-21 21:51:55] Set ATHENA_CORE_NUMBER=8
[2025-11-21 21:51:55] Starting ATLAS job with PandaID=6894238058
[2025-11-21 21:51:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc503/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 20:10:43]  *** The last 200 lines of the pilot log: ***
[2025-11-22 20:10:43] 2025-11-23 04:09:47,338 | INFO     | time since job start (80243s) is within the limit (172800.0s)
[2025-11-22 20:10:43] 2025-11-23 04:09:47,430 | INFO     | monitor loop #5627: job 0:6894238058 is in state 'finished'
[2025-11-22 20:10:43] 2025-11-23 04:09:47,431 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:10:43] 2025-11-23 04:09:47,881 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 20:10:43] 2025-11-23 04:09:47,881 | INFO     | job 6894238058 has state=finished
[2025-11-22 20:10:43] 2025-11-23 04:09:47,881 | INFO     | preparing for final server update for job 6894238058 in state='finished'
[2025-11-22 20:10:43] 2025-11-23 04:09:47,881 | INFO     | this job has now completed (state=finished)
[2025-11-22 20:10:43] 2025-11-23 04:09:47,882 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-22 20:10:43] 2025-11-23 04:09:47,882 | INFO     | log transfer has been attempted: DONE
[2025-11-22 20:10:43] 2025-11-23 04:09:47,882 | INFO     | job 6894238058 has finished - writing final server update
[2025-11-22 20:10:43] 2025-11-23 04:09:47,882 | INFO     | total number of processed events: 1000 (read)
[2025-11-22 20:10:43] 2025-11-23 04:09:47,882 | INFO     | executing command: lscpu
[2025-11-22 20:10:43] 2025-11-23 04:09:47,908 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-22 20:10:43] 2025-11-23 04:09:49,343 | INFO     | time since job start (80245s) is within the limit (172800.0s)
[2025-11-22 20:10:43] 2025-11-23 04:09:49,932 | INFO     | monitor loop #5628: job 0:6894238058 is in state 'finished'
[2025-11-22 20:10:43] 2025-11-23 04:09:49,933 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:10:43] 2025-11-23 04:09:51,348 | INFO     | time since job start (80247s) is within the limit (172800.0s)
[2025-11-22 20:10:43] 2025-11-23 04:09:51,725 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 20:10:43] 2025-11-23 04:09:51,728 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3999.8620624999994
[2025-11-22 20:10:43] 2025-11-23 04:09:51,732 | INFO     | using path: /var/lib/multiboinc/boinc503/slots/8/PanDA_Pilot-6894238058/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 20:10:43] 2025-11-23 04:09:51,732 | INFO     | extracted standard info from prmon json
[2025-11-22 20:10:43] 2025-11-23 04:09:51,732 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 20:10:43] 2025-11-23 04:09:51,732 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 20:10:43] 2025-11-23 04:09:51,745 | INFO     | fitting pss+swap vs Time
[2025-11-22 20:10:43] 2025-11-23 04:09:51,746 | INFO     | sum of square deviations: 705127083487.9209
[2025-11-22 20:10:43] 2025-11-23 04:09:51,767 | INFO     | sum of deviations: 8778723751395.639
[2025-11-22 20:10:43] 2025-11-23 04:09:51,767 | INFO     | mean x: 1763830853.3741446
[2025-11-22 20:10:43] 2025-11-23 04:09:51,767 | INFO     | mean y: 3417562.124714829
[2025-11-22 20:10:43] 2025-11-23 04:09:51,767 | INFO     | intersect: -21956005311.504406
[2025-11-22 20:10:43] 2025-11-23 04:09:51,768 | INFO     | chi2: 10.862992915182263
[2025-11-22 20:10:43] 2025-11-23 04:09:51,769 | INFO     | sum of square deviations: 697114720524.7183
[2025-11-22 20:10:43] 2025-11-23 04:09:51,787 | INFO     | sum of deviations: 9163374793551.223
[2025-11-22 20:10:43] 2025-11-23 04:09:51,787 | INFO     | mean x: 1763830700.8755724
[2025-11-22 20:10:43] 2025-11-23 04:09:51,787 | INFO     | mean y: 3424875.375572519
[2025-11-22 20:10:43] 2025-11-23 04:09:51,787 | INFO     | intersect: -23181628184.943375
[2025-11-22 20:10:43] 2025-11-23 04:09:51,788 | INFO     | chi2: 8.428054193951409
[2025-11-22 20:10:43] 2025-11-23 04:09:51,788 | INFO     | current chi2=8.428054193951409 (change=22.414989499143935 %)
[2025-11-22 20:10:43] 2025-11-23 04:09:51,788 | INFO     | right removable region: 1309
[2025-11-22 20:10:43] 2025-11-23 04:09:51,789 | INFO     | sum of square deviations: 697114420404.7181
[2025-11-22 20:10:43] 2025-11-23 04:09:51,807 | INFO     | sum of deviations: 8282000252443.863
[2025-11-22 20:10:43] 2025-11-23 04:09:51,808 | INFO     | mean x: 1763831005.8755724
[2025-11-22 20:10:43] 2025-11-23 04:09:51,808 | INFO     | mean y: 3427010.4961832063
[2025-11-22 20:10:43] 2025-11-23 04:09:51,808 | INFO     | intersect: -20951596165.539864
[2025-11-22 20:10:43] 2025-11-23 04:09:51,808 | INFO     | chi2: 8.281643277571833
[2025-11-22 20:10:43] 2025-11-23 04:09:51,808 | INFO     | current chi2=8.281643277571833 (change=23.762784876741485 %)
[2025-11-22 20:10:43] 2025-11-23 04:09:51,808 | INFO     | left removable region: 10
[2025-11-22 20:10:43] 2025-11-23 04:09:51,809 | INFO     | sum of square deviations: 679701072757.6538
[2025-11-22 20:10:43] 2025-11-23 04:09:51,827 | INFO     | sum of deviations: 8433389631391.299
[2025-11-22 20:10:43] 2025-11-23 04:09:51,827 | INFO     | mean x: 1763830975.378753
[2025-11-22 20:10:43] 2025-11-23 04:09:51,827 | INFO     | mean y: 3438913.989222479
[2025-11-22 20:10:43] 2025-11-23 04:09:51,827 | INFO     | intersect: -21881290205.144676
[2025-11-22 20:10:43] 2025-11-23 04:09:51,828 | INFO     | chi2: 5.557719889952415
[2025-11-22 20:10:43] 2025-11-23 04:09:51,828 | INFO     | current memory leak: 12.41 B/s (using 1299 data points, chi2=5.56)
[2025-11-22 20:10:43] 2025-11-23 04:09:51,829 | INFO     | could have reported an average CPU frequency of 3999 MHz (48 samples)
[2025-11-22 20:10:43] 2025-11-23 04:09:51,829 | INFO     | ..............................
[2025-11-22 20:10:43] 2025-11-23 04:09:51,829 | INFO     | . Timing measurements:
[2025-11-22 20:10:43] 2025-11-23 04:09:51,829 | INFO     | . get job = 0 s
[2025-11-22 20:10:43] 2025-11-23 04:09:51,829 | INFO     | . initial setup = 3 s
[2025-11-22 20:10:43] 2025-11-23 04:09:51,829 | INFO     | . payload setup = 7 s
[2025-11-22 20:10:43] 2025-11-23 04:09:51,829 | INFO     | . stage-in = 0 s
[2025-11-22 20:10:43] 2025-11-23 04:09:51,829 | INFO     | . payload execution = 80206 s
[2025-11-22 20:10:43] 2025-11-23 04:09:51,829 | INFO     | . stage-out = 3 s
[2025-11-22 20:10:43] 2025-11-23 04:09:51,829 | INFO     | . log creation = 0 s
[2025-11-22 20:10:43] 2025-11-23 04:09:51,829 | INFO     | ..............................
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | 
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | job summary report
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | --------------------------------------------------
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | PanDA job id: 6894238058
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | task id: 47533967
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | errors: (none)
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | pilot state: finished 
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | transexitcode: 0
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | exeerrorcode: 0
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | exeerrordiag: 
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | exitcode: 0
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | exitmsg: OK
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | cpuconsumptiontime: 138023 s
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | nevents: 1000
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | neventsw: 0
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | pid: 1998567
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | pgrp: 1998567
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | corecount: 8
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | event service: False
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | sizes: {0: 2298818, 6: 2299080, 11: 2299108, 80217: 2362005, 80222: 2371027, 80224: 2371083, 80230: 2371457}
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | --------------------------------------------------
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | 
[2025-11-22 20:10:43] 2025-11-23 04:09:51,890 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc503/slots/8
[2025-11-22 20:10:43] 2025-11-23 04:09:51,919 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,919 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,919 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,919 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,919 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,919 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,919 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,919 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,919 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,919 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,919 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,920 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,920 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,920 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,920 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,920 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,920 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,920 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 20:10:43] 2025-11-23 04:09:51,920 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,920 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 20:10:43] 2025-11-23 04:09:51,920 | INFO     | job 6894238058 has completed (purged errors)
[2025-11-22 20:10:43] 2025-11-23 04:09:51,920 | INFO     | overall cleanup function is called
[2025-11-22 20:10:43] 2025-11-23 04:09:52,945 | INFO     | --- collectZombieJob: --- 10, [1998567]
[2025-11-22 20:10:43] 2025-11-23 04:09:52,946 | INFO     | zombie collector waiting for pid 1998567
[2025-11-22 20:10:43] 2025-11-23 04:09:52,946 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 20:10:43] 2025-11-23 04:09:52,946 | INFO     | collected zombie processes
[2025-11-22 20:10:43] 2025-11-23 04:09:52,946 | INFO     | will attempt to kill all subprocesses of pid=1998567
[2025-11-22 20:10:43] 2025-11-23 04:09:53,197 | INFO     | process IDs to be killed: [1998567] (in reverse order)
[2025-11-22 20:10:43] 2025-11-23 04:09:53,303 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 20:10:43] 2025-11-23 04:09:53,304 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 20:10:43] 2025-11-23 04:09:53,308 | INFO     | did not find any defunct processes belonging to 1998567
[2025-11-22 20:10:43] 2025-11-23 04:09:53,313 | INFO     | did not find any defunct processes belonging to 1998567
[2025-11-22 20:10:43] 2025-11-23 04:09:53,315 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 20:10:43] 2025-11-23 04:09:53,315 | INFO     | ready for new job
[2025-11-22 20:10:43] 2025-11-23 04:09:53,315 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 20:10:43] 2025-11-23 04:09:53,318 | INFO     | ***************************************
[2025-11-22 20:10:43] 2025-11-23 04:09:53,318 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 20:10:43] 2025-11-23 04:09:53,318 | INFO     | ***************************************
[2025-11-22 20:10:43] 2025-11-23 04:09:53,318 | INFO     | 
[2025-11-22 20:10:43] 2025-11-23 04:09:53,319 | INFO     | architecture information:
[2025-11-22 20:10:43] 2025-11-23 04:09:53,320 | INFO     | executing command: cat /etc/os-release
[2025-11-22 20:10:43] 2025-11-23 04:09:53,343 | INFO     | cat /etc/os-release:
[2025-11-22 20:10:43] NAME="CentOS Linux"
[2025-11-22 20:10:43] VERSION="7 (Core)"
[2025-11-22 20:10:43] ID="centos"
[2025-11-22 20:10:43] ID_LIKE="rhel fedora"
[2025-11-22 20:10:43] VERSION_ID="7"
[2025-11-22 20:10:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 20:10:43] ANSI_COLOR="0;31"
[2025-11-22 20:10:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 20:10:43] HOME_URL="https://www.centos.org/"
[2025-11-22 20:10:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 20:10:43] 
[2025-11-22 20:10:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 20:10:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 20:10:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 20:10:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 20:10:43] 
[2025-11-22 20:10:43] 2025-11-23 04:09:53,343 | INFO     | ***************************************
[2025-11-22 20:10:43] 2025-11-23 04:09:53,846 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc503/slots/8
[2025-11-22 20:10:43] 2025-11-23 04:09:53,860 | INFO     | sufficient remaining disk space (186990460928 B)
[2025-11-22 20:10:43] 2025-11-23 04:09:53,860 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 20:10:43] 2025-11-23 04:09:53,860 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 20:10:43] 2025-11-23 04:09:53,860 | INFO     | update_server=False
[2025-11-22 20:10:43] 2025-11-23 04:09:53,860 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 20:10:43] 2025-11-23 04:09:53,860 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:10:43] 2025-11-23 04:09:53,860 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:10:43] 2025-11-23 04:09:53,860 | INFO     | aborting loop
[2025-11-22 20:10:43] 2025-11-23 04:09:53,997 | INFO     | all payload control threads have been joined
[2025-11-22 20:10:43] 2025-11-23 04:09:54,338 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 20:10:43] 2025-11-23 04:09:54,399 | INFO     | all job control threads have been joined
[2025-11-22 20:10:43] 2025-11-23 04:09:54,854 | INFO     | all data control threads have been joined
[2025-11-22 20:10:43] 2025-11-23 04:09:54,865 | INFO     | [job] retrieve thread has finished
[2025-11-22 20:10:43] 2025-11-23 04:09:54,865 | INFO     | [job] queue monitor thread has finished
[2025-11-22 20:10:43] 2025-11-23 04:09:54,866 | INFO     | [job] job monitor thread has finished
[2025-11-22 20:10:43] 2025-11-23 04:09:54,884 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 20:10:43] 2025-11-23 04:09:55,002 | INFO     | [payload] control thread has finished
[2025-11-22 20:10:43] 2025-11-23 04:09:55,005 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 20:10:43] 2025-11-23 04:09:55,164 | INFO     | [job] validate thread has finished
[2025-11-22 20:10:43] 2025-11-23 04:09:55,184 | INFO     | [data] copytool_in thread has finished
[2025-11-22 20:10:43] 2025-11-23 04:09:55,251 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 20:10:43] 2025-11-23 04:09:55,404 | INFO     | [job] control thread has finished
[2025-11-22 20:10:43] 2025-11-23 04:09:55,859 | INFO     | [data] control thread has finished
[2025-11-22 20:10:43] 2025-11-23 04:09:56,082 | INFO     | [payload] failed_post thread has finished
[2025-11-22 20:10:43] 2025-11-23 04:09:56,258 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 20:10:43] 2025-11-23 04:09:56,316 | INFO     | [payload] validate_post thread has finished
[2025-11-22 20:10:43] 2025-11-23 04:09:56,343 | INFO     | [data] copytool_out thread has finished
[2025-11-22 20:10:43] 2025-11-23 04:09:56,417 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 20:10:43] 2025-11-23 04:10:00,422 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 20:10:43] 2025-11-23 04:10:24,646 | INFO     | PID=1933049 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 20:10:43] 2025-11-23 04:10:24,646 | INFO     | .. there are 9 such processes running
[2025-11-22 20:10:43] 2025-11-23 04:10:24,647 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 20:10:43] 2025-11-23 04:10:24,647 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 20:10:43] 2025-11-23 04:10:24,647 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 20:10:43] 2025-11-23 04:10:37,629 | INFO     | [monitor] cgroup control has ended
[2025-11-22 20:10:43] 2025-11-23 04:10:37,976 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125122515199808)>', '<ExcThread(monitor, started 125121691891456)>']
[2025-11-22 20:10:43] 2025-11-23 04:10:38,716 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 20:10:43] 2025-11-23 04:10:38,717 | INFO     | [monitor] control thread has ended
[2025-11-22 20:10:43] 2025-11-23 04:10:43,001 | INFO     | all workflow threads have been joined
[2025-11-22 20:10:43] 2025-11-23 04:10:43,002 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 20:10:43] 2025-11-23 04:10:43,002 | INFO     | traces error code: 0
[2025-11-22 20:10:43] 2025-11-23 04:10:43,002 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 20:10:43] 2025-11-23 04:10:43,080 [wrapper] ==== pilot stdout END ====
[2025-11-22 20:10:43] 2025-11-23 04:10:43,082 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 20:10:43] 2025-11-23 04:10:43,083 [wrapper] pilotpid: 1933049
[2025-11-22 20:10:43] 2025-11-23 04:10:43,085 [wrapper] Pilot exit status: 0
[2025-11-22 20:10:43] 2025-11-23 04:10:43,095 [wrapper] pandaids: 6894238058
[2025-11-22 20:10:43] 2025-11-23 04:10:43,149 [wrapper] cleanup supervisor_pilot 4114242 1933050
[2025-11-22 20:10:43] 2025-11-23 04:10:43,151 [wrapper] Test setup, not cleaning
[2025-11-22 20:10:43] 2025-11-23 04:10:43,153 [wrapper] apfmon messages muted
[2025-11-22 20:10:43] 2025-11-23 04:10:43,155 [wrapper] ==== wrapper stdout END ====
[2025-11-22 20:10:43] 2025-11-23 04:10:43,157 [wrapper] ==== wrapper stderr END ====
[2025-11-22 20:10:43]  *** Error codes and diagnostics ***
[2025-11-22 20:10:43]     "exeErrorCode": 0,
[2025-11-22 20:10:43]     "exeErrorDiag": "",
[2025-11-22 20:10:43]     "pilotErrorCode": 0,
[2025-11-22 20:10:43]     "pilotErrorDiag": "",
[2025-11-22 20:10:43]  *** Listing of results directory ***
[2025-11-22 20:10:43] total 1338992
[2025-11-22 20:10:43] -rw-r--r-- 1 root root    576529 Nov 20 16:06 pilot3.tar.gz
[2025-11-22 20:10:43] -rwx------ 1 4871 1028     36292 Nov 20 16:19 runpilot2-wrapper.sh
[2025-11-22 20:10:43] -rw-r--r-- 1 root root      5112 Nov 20 16:19 queuedata.json
[2025-11-22 20:10:43] -rw-r--r-- 1 root root       100 Nov 21 21:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 20:10:43] -rwxr-xr-x 1 root root      7986 Nov 21 21:51 run_atlas
[2025-11-22 20:10:43] -rw-r--r-- 1 root root       105 Nov 21 21:51 job.xml
[2025-11-22 20:10:43] -rw-r--r-- 1 root root      7071 Nov 21 21:51 init_data.xml
[2025-11-22 20:10:43] -rw-r--r-- 2 root root 410675667 Nov 21 21:51 EVNT.47493127._002043.pool.root.1
[2025-11-22 20:10:43] drwxrwx--x 2 root root      4096 Nov 21 21:51 shared
[2025-11-22 20:10:43] -rw-r--r-- 2 root root    590098 Nov 21 21:51 input.tar.gz
[2025-11-22 20:10:43] -rw-r--r-- 2 root root     15847 Nov 21 21:51 start_atlas.sh
[2025-11-22 20:10:43] -rw-r--r-- 1 root root         0 Nov 21 21:51 boinc_lockfile
[2025-11-22 20:10:43] -rw-r--r-- 1 root root      2784 Nov 21 21:51 pandaJob.out
[2025-11-22 20:10:43] -rw------- 1 root root    989752 Nov 21 21:52 agis_schedconf.cvmfs.json
[2025-11-22 20:10:43] drwxr-xr-x 5  320  320      4096 Nov 21 21:52 pilot3
[2025-11-22 20:10:43] -rw-r--r-- 1 root root       532 Nov 22 20:03 boinc_task_state.xml
[2025-11-22 20:10:43] -rw------- 1 root root 929362689 Nov 22 20:09 HITS.47533967._000143.pool.root.1
[2025-11-22 20:10:43] -rw------- 1 root root        95 Nov 22 20:09 pilot_heartbeat.json
[2025-11-22 20:10:43] -rw------- 1 root root      1065 Nov 22 20:09 memory_monitor_summary.json
[2025-11-22 20:10:43] -rw------- 1 root root   1526164 Nov 22 20:09 agis_ddmendpoints.agis.ALL.json
[2025-11-22 20:10:43] -rw------- 1 root root   2380780 Nov 22 20:09 log.47533967._000143.job.log.tgz.1
[2025-11-22 20:10:43] -rw------- 1 root root      8629 Nov 22 20:09 heartbeat.json
[2025-11-22 20:10:43] -rw-r--r-- 1 root root        29 Nov 22 20:10 wrapper_checkpoint.txt
[2025-11-22 20:10:43] -rw-r--r-- 1 root root      8192 Nov 22 20:10 boinc_mmap_file
[2025-11-22 20:10:43] -rw------- 1 root root      4838 Nov 22 20:10 pilotlog.txt
[2025-11-22 20:10:43] -rw------- 1 root root  11202567 Nov 22 20:10 log.47533967._000143.job.log.1
[2025-11-22 20:10:43] -rw------- 1 root root       353 Nov 22 20:10 output.list
[2025-11-22 20:10:43] -rw-r--r-- 1 root root       620 Nov 22 20:10 runtime_log
[2025-11-22 20:10:43] -rw------- 1 root root  13598720 Nov 22 20:10 result.tar.gz
[2025-11-22 20:10:43] -rw-r--r-- 1 root root      9019 Nov 22 20:10 runtime_log.err
[2025-11-22 20:10:43] -rw------- 1 root root       664 Nov 22 20:10 O4YNDmJ3Tg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGjIKDmqfIq6n.diag
[2025-11-22 20:10:43] -rw-r--r-- 1 root root     21943 Nov 22 20:10 stderr.txt
[2025-11-22 20:10:43] HITS file was successfully produced:
[2025-11-22 20:10:43] -rw------- 1 root root 929362689 Nov 22 20:09 shared/HITS.pool.root.1
[2025-11-22 20:10:43]  *** Contents of shared directory: ***
[2025-11-22 20:10:43] total 1322520
[2025-11-22 20:10:43] -rw-r--r-- 2 root root 410675667 Nov 21 21:51 ATLAS.root_0
[2025-11-22 20:10:43] -rw-r--r-- 2 root root    590098 Nov 21 21:51 input.tar.gz
[2025-11-22 20:10:43] -rw-r--r-- 2 root root     15847 Nov 21 21:51 start_atlas.sh
[2025-11-22 20:10:43] -rw------- 1 root root 929362689 Nov 22 20:09 HITS.pool.root.1
[2025-11-22 20:10:43] -rw------- 1 root root  13598720 Nov 22 20:10 result.tar.gz
20:10:44 (1895297): run_atlas exited; CPU time 138641.535159
20:10:44 (1895297): called boinc_finish(0)

</stderr_txt>
]]>

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