Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:56 (356238): wrapper (7.7.26015): starting
00:05:56 (356238): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 00:05:56] Arguments: --nthreads 9
[2025-11-21 00:05:56] Threads: 9
[2025-11-21 00:05:56] Checking for CVMFS
[2025-11-21 00:05:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:05:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:05:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:05:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:05:58] 2.13.3.0 12468 22410 347240 153108 0 532 21612479 32947200 24380 16776704 0 85918673 99.386 129361049 33554 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 00:05:58] CVMFS is ok
[2025-11-21 00:05:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:05:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:05:58] Further information can be found at the LHC@home message board.
[2025-11-21 00:05:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:05:58] Checking for apptainer binary...
[2025-11-21 00:05:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:05:58] Running /usr/bin/apptainer --version
[2025-11-21 00:05:58] apptainer version 1.4.4-1.el9
[2025-11-21 00:05:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:05:59] c6-6-8-1.aglt2.org
[2025-11-21 00:05:59] apptainer works
[2025-11-21 00:05:59] Set ATHENA_PROC_NUMBER=9
[2025-11-21 00:05:59] Set ATHENA_CORE_NUMBER=9
[2025-11-21 00:05:59] Starting ATLAS job with PandaID=6893849983
[2025-11-21 00:05:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 14:52:13]  *** The last 200 lines of the pilot log: ***
[2025-11-21 14:52:13] 2025-11-21 19:51:00,632 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 14:52:13] 2025-11-21 19:51:01,204 | INFO     | PID=368484 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 14:52:13] 2025-11-21 19:51:01,204 | INFO     | .. there are 43 such processes running
[2025-11-21 14:52:13] 2025-11-21 19:51:02,205 | INFO     | time since job start (53031s) is within the limit (172800.0s)
[2025-11-21 14:52:13] 2025-11-21 19:51:03,142 | INFO     | monitor loop #3329: job 0:6893849983 is in state 'finished'
[2025-11-21 14:52:13] 2025-11-21 19:51:03,142 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 14:52:13] 2025-11-21 19:51:04,215 | INFO     | time since job start (53033s) is within the limit (172800.0s)
[2025-11-21 14:52:13] 2025-11-21 19:51:05,647 | INFO     | monitor loop #3330: job 0:6893849983 is in state 'finished'
[2025-11-21 14:52:13] 2025-11-21 19:51:05,647 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 14:52:13] 2025-11-21 19:51:06,225 | INFO     | time since job start (53035s) is within the limit (172800.0s)
[2025-11-21 14:52:13] 2025-11-21 19:51:08,156 | INFO     | monitor loop #3331: job 0:6893849983 is in state 'finished'
[2025-11-21 14:52:13] 2025-11-21 19:51:08,156 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 14:52:13] 2025-11-21 19:51:08,251 | INFO     | time since job start (53037s) is within the limit (172800.0s)
[2025-11-21 14:52:13] 2025-11-21 19:51:10,301 | INFO     | time since job start (53039s) is within the limit (172800.0s)
[2025-11-21 14:52:13] 2025-11-21 19:51:10,677 | INFO     | monitor loop #3332: job 0:6893849983 is in state 'finished'
[2025-11-21 14:52:13] 2025-11-21 19:51:10,677 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 14:52:13] 2025-11-21 19:51:10,831 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 14:52:13] 2025-11-21 19:51:10,910 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2706.004333333334
[2025-11-21 14:52:13] 2025-11-21 19:51:11,012 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6893849983/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 14:52:13] 2025-11-21 19:51:11,013 | INFO     | extracted standard info from prmon json
[2025-11-21 14:52:13] 2025-11-21 19:51:11,013 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 14:52:13] 2025-11-21 19:51:11,013 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 14:52:13] 2025-11-21 19:51:11,236 | INFO     | fitting pss+swap vs Time
[2025-11-21 14:52:13] 2025-11-21 19:51:11,259 | INFO     | sum of square deviations: 202086190603.76685
[2025-11-21 14:52:13] 2025-11-21 19:51:11,639 | INFO     | sum of deviations: 889888012011.0057
[2025-11-21 14:52:13] 2025-11-21 19:51:11,640 | INFO     | mean x: 1763728182.7174163
[2025-11-21 14:52:13] 2025-11-21 19:51:11,640 | INFO     | mean y: 2936448.7347174166
[2025-11-21 14:52:13] 2025-11-21 19:51:11,640 | INFO     | intersect: -7763653448.165095
[2025-11-21 14:52:13] 2025-11-21 19:51:11,664 | INFO     | chi2: 27.75033065424967
[2025-11-21 14:52:13] 2025-11-21 19:51:11,666 | INFO     | sum of square deviations: 198610477231.43396
[2025-11-21 14:52:13] 2025-11-21 19:51:11,747 | INFO     | sum of deviations: 1251179487025.9224
[2025-11-21 14:52:13] 2025-11-21 19:51:11,768 | INFO     | mean x: 1763728030.2273781
[2025-11-21 14:52:13] 2025-11-21 19:51:11,768 | INFO     | mean y: 2952299.8932714616
[2025-11-21 14:52:13] 2025-11-21 19:51:11,768 | INFO     | intersect: -11107943574.656654
[2025-11-21 14:52:13] 2025-11-21 19:51:11,770 | INFO     | chi2: 22.847425493377756
[2025-11-21 14:52:13] 2025-11-21 19:51:11,770 | INFO     | current chi2=22.847425493377756 (change=17.667916184346748 %)
[2025-11-21 14:52:13] 2025-11-21 19:51:11,770 | INFO     | right removable region: 861
[2025-11-21 14:52:13] 2025-11-21 19:51:11,771 | INFO     | sum of square deviations: 198609568941.43393
[2025-11-21 14:52:13] 2025-11-21 19:51:11,866 | INFO     | sum of deviations: 537531189004.32697
[2025-11-21 14:52:13] 2025-11-21 19:51:11,866 | INFO     | mean x: 1763728335.2273781
[2025-11-21 14:52:13] 2025-11-21 19:51:11,866 | INFO     | mean y: 2951901.9013921116
[2025-11-21 14:52:13] 2025-11-21 19:51:11,866 | INFO     | intersect: -4770529024.36233
[2025-11-21 14:52:13] 2025-11-21 19:51:11,889 | INFO     | chi2: 23.720460309364544
[2025-11-21 14:52:13] 2025-11-21 19:51:11,890 | INFO     | current chi2=23.720460309364544 (change=14.521882261853314 %)
[2025-11-21 14:52:13] 2025-11-21 19:51:11,890 | INFO     | left removable region: 10
[2025-11-21 14:52:13] 2025-11-21 19:51:11,891 | INFO     | sum of square deviations: 191102893871.68878
[2025-11-21 14:52:13] 2025-11-21 19:51:11,977 | INFO     | sum of deviations: 663235613411.8563
[2025-11-21 14:52:13] 2025-11-21 19:51:11,977 | INFO     | mean x: 1763728304.7497063
[2025-11-21 14:52:13] 2025-11-21 19:51:12,000 | INFO     | mean y: 2985027.4218566394
[2025-11-21 14:52:13] 2025-11-21 19:51:12,001 | INFO     | intersect: -6118154220.620801
[2025-11-21 14:52:13] 2025-11-21 19:51:12,002 | INFO     | chi2: 14.761167560723688
[2025-11-21 14:52:13] 2025-11-21 19:51:12,002 | INFO     | current memory leak: 3.47 B/s (using 851 data points, chi2=14.76)
[2025-11-21 14:52:13] 2025-11-21 19:51:12,003 | INFO     | could have reported an average CPU frequency of 2688 MHz (32 samples)
[2025-11-21 14:52:13] 2025-11-21 19:51:12,003 | INFO     | ..............................
[2025-11-21 14:52:13] 2025-11-21 19:51:12,003 | INFO     | . Timing measurements:
[2025-11-21 14:52:13] 2025-11-21 19:51:12,003 | INFO     | . get job = 0 s
[2025-11-21 14:52:13] 2025-11-21 19:51:12,003 | INFO     | . initial setup = 8 s
[2025-11-21 14:52:13] 2025-11-21 19:51:12,003 | INFO     | . payload setup = 43 s
[2025-11-21 14:52:13] 2025-11-21 19:51:12,004 | INFO     | . stage-in = 0 s
[2025-11-21 14:52:13] 2025-11-21 19:51:12,004 | INFO     | . payload execution = 52873 s
[2025-11-21 14:52:13] 2025-11-21 19:51:12,004 | INFO     | . stage-out = 13 s
[2025-11-21 14:52:13] 2025-11-21 19:51:12,004 | INFO     | . log creation = 4 s
[2025-11-21 14:52:13] 2025-11-21 19:51:12,004 | INFO     | ..............................
[2025-11-21 14:52:13] 2025-11-21 19:51:12,503 | INFO     | time since job start (53041s) is within the limit (172800.0s)
[2025-11-21 14:52:13] 2025-11-21 19:51:12,599 | INFO     | 
[2025-11-21 14:52:13] 2025-11-21 19:51:12,599 | INFO     | job summary report
[2025-11-21 14:52:13] 2025-11-21 19:51:12,599 | INFO     | --------------------------------------------------
[2025-11-21 14:52:13] 2025-11-21 19:51:12,599 | INFO     | PanDA job id: 6893849983
[2025-11-21 14:52:13] 2025-11-21 19:51:12,600 | INFO     | task id: 47523449
[2025-11-21 14:52:13] 2025-11-21 19:51:12,600 | INFO     | errors: (none)
[2025-11-21 14:52:13] 2025-11-21 19:51:12,600 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 14:52:13] 2025-11-21 19:51:12,600 | INFO     | pilot state: finished 
[2025-11-21 14:52:13] 2025-11-21 19:51:12,600 | INFO     | transexitcode: 0
[2025-11-21 14:52:13] 2025-11-21 19:51:12,600 | INFO     | exeerrorcode: 0
[2025-11-21 14:52:13] 2025-11-21 19:51:12,600 | INFO     | exeerrordiag: 
[2025-11-21 14:52:13] 2025-11-21 19:51:12,600 | INFO     | exitcode: 0
[2025-11-21 14:52:13] 2025-11-21 19:51:12,600 | INFO     | exitmsg: OK
[2025-11-21 14:52:13] 2025-11-21 19:51:12,600 | INFO     | cpuconsumptiontime: 258559 s
[2025-11-21 14:52:13] 2025-11-21 19:51:12,600 | INFO     | nevents: 1000
[2025-11-21 14:52:13] 2025-11-21 19:51:12,600 | INFO     | neventsw: 0
[2025-11-21 14:52:13] 2025-11-21 19:51:12,600 | INFO     | pid: 393034
[2025-11-21 14:52:13] 2025-11-21 19:51:12,601 | INFO     | pgrp: 393034
[2025-11-21 14:52:13] 2025-11-21 19:51:12,601 | INFO     | corecount: 9
[2025-11-21 14:52:13] 2025-11-21 19:51:12,601 | INFO     | event service: False
[2025-11-21 14:52:13] 2025-11-21 19:51:12,601 | INFO     | sizes: {0: 2298579, 1: 2298663, 2: 2298834, 3: 2298890, 14: 2298890, 25: 2298918, 31: 2299336, 36: 2299364, 52922: 2349070, 52924: 2349069, 52937: 2358147, 52940: 
[2025-11-21 14:52:13] 2025-11-21 19:51:12,601 | INFO     | --------------------------------------------------
[2025-11-21 14:52:13] 2025-11-21 19:51:12,601 | INFO     | 
[2025-11-21 14:52:13] 2025-11-21 19:51:12,601 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-21 14:52:13] 2025-11-21 19:51:12,760 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,760 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,760 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,760 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,760 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,760 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,760 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,760 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,761 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,761 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,761 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,761 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,761 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,761 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,761 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,761 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,761 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,761 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 14:52:13] 2025-11-21 19:51:12,761 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,761 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 14:52:13] 2025-11-21 19:51:12,762 | INFO     | job 6893849983 has completed (purged errors)
[2025-11-21 14:52:13] 2025-11-21 19:51:12,762 | INFO     | overall cleanup function is called
[2025-11-21 14:52:13] 2025-11-21 19:51:13,846 | INFO     | --- collectZombieJob: --- 10, [393034]
[2025-11-21 14:52:13] 2025-11-21 19:51:13,846 | INFO     | zombie collector waiting for pid 393034
[2025-11-21 14:52:13] 2025-11-21 19:51:13,847 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 14:52:13] 2025-11-21 19:51:13,847 | INFO     | collected zombie processes
[2025-11-21 14:52:13] 2025-11-21 19:51:13,847 | INFO     | will attempt to kill all subprocesses of pid=393034
[2025-11-21 14:52:13] 2025-11-21 19:51:16,405 | INFO     | process IDs to be killed: [393034] (in reverse order)
[2025-11-21 14:52:13] 2025-11-21 19:51:16,726 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 14:52:13] 2025-11-21 19:51:16,727 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 14:52:13] 2025-11-21 19:51:16,745 | INFO     | did not find any defunct processes belonging to 393034
[2025-11-21 14:52:13] 2025-11-21 19:51:16,764 | INFO     | did not find any defunct processes belonging to 393034
[2025-11-21 14:52:13] 2025-11-21 19:51:16,765 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 14:52:13] 2025-11-21 19:51:16,766 | INFO     | ready for new job
[2025-11-21 14:52:13] 2025-11-21 19:51:16,766 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 14:52:13] 2025-11-21 19:51:16,770 | INFO     | ***************************************
[2025-11-21 14:52:13] 2025-11-21 19:51:16,770 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 14:52:13] 2025-11-21 19:51:16,770 | INFO     | ***************************************
[2025-11-21 14:52:13] 2025-11-21 19:51:16,770 | INFO     | 
[2025-11-21 14:52:13] 2025-11-21 19:51:16,775 | INFO     | architecture information:
[2025-11-21 14:52:13] 2025-11-21 19:51:16,776 | INFO     | executing command: cat /etc/os-release
[2025-11-21 14:52:13] 2025-11-21 19:51:16,900 | INFO     | cat /etc/os-release:
[2025-11-21 14:52:13] NAME="CentOS Linux"
[2025-11-21 14:52:13] VERSION="7 (Core)"
[2025-11-21 14:52:13] ID="centos"
[2025-11-21 14:52:13] ID_LIKE="rhel fedora"
[2025-11-21 14:52:13] VERSION_ID="7"
[2025-11-21 14:52:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 14:52:13] ANSI_COLOR="0;31"
[2025-11-21 14:52:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 14:52:13] HOME_URL="https://www.centos.org/"
[2025-11-21 14:52:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 14:52:13] 
[2025-11-21 14:52:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 14:52:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 14:52:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 14:52:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 14:52:13] 
[2025-11-21 14:52:13] 2025-11-21 19:51:16,902 | INFO     | ***************************************
[2025-11-21 14:52:13] 2025-11-21 19:51:17,414 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-21 14:52:13] 2025-11-21 19:51:17,569 | INFO     | sufficient remaining disk space (60379103232 B)
[2025-11-21 14:52:13] 2025-11-21 19:51:17,569 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 14:52:13] 2025-11-21 19:51:17,569 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 14:52:13] 2025-11-21 19:51:17,569 | INFO     | update_server=False
[2025-11-21 14:52:13] 2025-11-21 19:51:17,569 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 14:52:13] 2025-11-21 19:51:17,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 14:52:13] 2025-11-21 19:51:17,574 | INFO     | aborting loop
[2025-11-21 14:52:13] 2025-11-21 19:51:17,728 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 14:52:13] 2025-11-21 19:51:18,052 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 14:52:13] 2025-11-21 19:51:18,115 | INFO     | all data control threads have been joined
[2025-11-21 14:52:13] 2025-11-21 19:51:18,275 | INFO     | all payload control threads have been joined
[2025-11-21 14:52:13] 2025-11-21 19:51:18,575 | INFO     | [job] retrieve thread has finished
[2025-11-21 14:52:13] 2025-11-21 19:51:18,580 | INFO     | [job] job monitor thread has finished
[2025-11-21 14:52:13] 2025-11-21 19:51:18,671 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 14:52:13] 2025-11-21 19:51:18,678 | INFO     | all job control threads have been joined
[2025-11-21 14:52:13] 2025-11-21 19:51:18,737 | INFO     | [job] queue monitor thread has finished
[2025-11-21 14:52:13] 2025-11-21 19:51:18,760 | INFO     | [payload] validate_post thread has finished
[2025-11-21 14:52:13] 2025-11-21 19:51:18,775 | INFO     | [payload] failed_post thread has finished
[2025-11-21 14:52:13] 2025-11-21 19:51:18,788 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 14:52:13] 2025-11-21 19:51:19,011 | INFO     | [job] validate thread has finished
[2025-11-21 14:52:13] 2025-11-21 19:51:19,012 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 14:52:13] 2025-11-21 19:51:19,021 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 14:52:13] 2025-11-21 19:51:19,022 | INFO     | [data] copytool_in thread has finished
[2025-11-21 14:52:13] 2025-11-21 19:51:19,059 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 14:52:13] 2025-11-21 19:51:19,121 | INFO     | [data] control thread has finished
[2025-11-21 14:52:13] 2025-11-21 19:51:19,281 | INFO     | [payload] control thread has finished
[2025-11-21 14:52:13] 2025-11-21 19:51:19,684 | INFO     | [job] control thread has finished
[2025-11-21 14:52:13] 2025-11-21 19:51:20,085 | INFO     | [data] copytool_out thread has finished
[2025-11-21 14:52:13] 2025-11-21 19:51:23,088 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 14:52:13] 2025-11-21 19:51:43,422 | INFO     | [monitor] cgroup control has ended
[2025-11-21 14:52:13] 2025-11-21 19:51:44,217 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140435653482304)>', '<ExcThread(monitor, started 140435011917568)>']
[2025-11-21 14:52:13] 2025-11-21 19:51:49,264 | INFO     | all workflow threads have been joined
[2025-11-21 14:52:13] 2025-11-21 19:51:49,381 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 14:52:13] 2025-11-21 19:51:49,382 | INFO     | traces error code: 0
[2025-11-21 14:52:13] 2025-11-21 19:51:49,382 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 14:52:13] 2025-11-21 19:51:57,432 | INFO     | PID=368484 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 14:52:13] 2025-11-21 19:51:57,433 | INFO     | .. there are 42 such processes running
[2025-11-21 14:52:13] 2025-11-21 19:51:57,433 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 14:52:13] 2025-11-21 19:51:57,433 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 14:52:13] 2025-11-21 19:51:57,433 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 14:52:13] 2025-11-21 19:51:57,433 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 14:52:13] 2025-11-21 19:51:57,433 | INFO     | [monitor] control thread has ended
[2025-11-21 14:52:13] 2025-11-21 19:51:59,937 [wrapper] ==== pilot stdout END ====
[2025-11-21 14:52:13] 2025-11-21 19:51:59,952 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 14:52:13] 2025-11-21 19:51:59,968 [wrapper] pilotpid: 368484
[2025-11-21 14:52:13] 2025-11-21 19:51:59,975 [wrapper] Pilot exit status: 0
[2025-11-21 14:52:13] 2025-11-21 19:52:00,045 [wrapper] pandaids: 6893849983
[2025-11-21 14:52:13] 2025-11-21 19:52:00,252 [wrapper] cleanup supervisor_pilot 3739883 368485
[2025-11-21 14:52:13] 2025-11-21 19:52:00,264 [wrapper] Test setup, not cleaning
[2025-11-21 14:52:13] 2025-11-21 19:52:00,280 [wrapper] apfmon messages muted
[2025-11-21 14:52:13] 2025-11-21 19:52:00,295 [wrapper] ==== wrapper stdout END ====
[2025-11-21 14:52:13] 2025-11-21 19:52:00,323 [wrapper] ==== wrapper stderr END ====
[2025-11-21 14:52:13]  *** Error codes and diagnostics ***
[2025-11-21 14:52:13]     "exeErrorCode": 0,
[2025-11-21 14:52:13]     "exeErrorDiag": "",
[2025-11-21 14:52:13]     "pilotErrorCode": 0,
[2025-11-21 14:52:13]     "pilotErrorDiag": "",
[2025-11-21 14:52:13]  *** Listing of results directory ***
[2025-11-21 14:52:13] total 1314940
[2025-11-21 14:52:13] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 06:00 pilot3.tar.gz
[2025-11-21 14:52:13] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 06:05 queuedata.json
[2025-11-21 14:52:13] -rwx------ 1 boincer umatlas     36292 Nov 20 06:05 runpilot2-wrapper.sh
[2025-11-21 14:52:13] -rw-r--r-- 1 boincer umatlas       100 Nov 21 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 14:52:13] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 00:05 run_atlas
[2025-11-21 14:52:13] -rw-r--r-- 1 boincer umatlas       105 Nov 21 00:05 job.xml
[2025-11-21 14:52:13] -rw-r--r-- 2 boincer umatlas 410750872 Nov 21 00:05 EVNT.47493127._000313.pool.root.1
[2025-11-21 14:52:13] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 00:05 start_atlas.sh
[2025-11-21 14:52:13] drwxrwx--x 2 boincer umatlas      4096 Nov 21 00:05 shared
[2025-11-21 14:52:13] -rw-r--r-- 2 boincer umatlas    590100 Nov 21 00:05 input.tar.gz
[2025-11-21 14:52:13] -rw-r--r-- 1 boincer umatlas         0 Nov 21 00:05 boinc_lockfile
[2025-11-21 14:52:13] -rw-r--r-- 1 boincer umatlas      2785 Nov 21 00:05 pandaJob.out
[2025-11-21 14:52:13] -rw------- 1 boincer umatlas        57 Nov 21 00:06 setup.sh.local
[2025-11-21 14:52:13] -rw------- 1 boincer umatlas    989817 Nov 21 00:07 agis_schedconf.cvmfs.json
[2025-11-21 14:52:13] drwx------ 5 boincer umatlas      4096 Nov 21 00:07 pilot3
[2025-11-21 14:52:13] -rw-r--r-- 1 boincer umatlas       533 Nov 21 14:18 boinc_task_state.xml
[2025-11-21 14:52:13] -rw------- 1 boincer umatlas 913686337 Nov 21 14:43 HITS.47523449._003129.pool.root.1
[2025-11-21 14:52:13] -rw-r--r-- 1 boincer umatlas      6878 Nov 21 14:48 init_data.xml
[2025-11-21 14:52:13] -rw------- 1 boincer umatlas      1056 Nov 21 14:50 memory_monitor_summary.json
[2025-11-21 14:52:13] -rw------- 1 boincer umatlas   1526164 Nov 21 14:50 agis_ddmendpoints.agis.ALL.json
[2025-11-21 14:52:13] -rw------- 1 boincer umatlas   2170433 Nov 21 14:50 log.47523449._003129.job.log.tgz.1
[2025-11-21 14:52:13] -rw------- 1 boincer umatlas        95 Nov 21 14:51 pilot_heartbeat.json
[2025-11-21 14:52:13] -rw------- 1 boincer umatlas      8631 Nov 21 14:51 heartbeat.json
[2025-11-21 14:52:13] -rw------- 1 boincer umatlas       822 Nov 21 14:51 pilotlog.txt
[2025-11-21 14:52:13] -rw------- 1 boincer umatlas   6899476 Nov 21 14:52 log.47523449._003129.job.log.1
[2025-11-21 14:52:13] -rw------- 1 boincer umatlas       353 Nov 21 14:52 output.list
[2025-11-21 14:52:13] -rw-r--r-- 1 boincer umatlas       620 Nov 21 14:52 runtime_log
[2025-11-21 14:52:13] -rw------- 1 boincer umatlas   9093120 Nov 21 14:52 result.tar.gz
[2025-11-21 14:52:13] -rw-r--r-- 1 boincer umatlas      9343 Nov 21 14:52 runtime_log.err
[2025-11-21 14:52:13] -rw------- 1 boincer umatlas       660 Nov 21 14:52 jDBMDmleHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZaHKDmqX2LKo.diag
[2025-11-21 14:52:13] -rw-r--r-- 1 boincer umatlas      8192 Nov 21 14:52 boinc_mmap_file
[2025-11-21 14:52:13] -rw-r--r-- 1 boincer umatlas        29 Nov 21 14:52 wrapper_checkpoint.txt
[2025-11-21 14:52:13] -rw-r--r-- 1 boincer umatlas     21893 Nov 21 14:52 stderr.txt
[2025-11-21 14:52:13] HITS file was successfully produced:
[2025-11-21 14:52:13] -rw------- 1 boincer umatlas 913686337 Nov 21 14:43 shared/HITS.pool.root.1
[2025-11-21 14:52:13]  *** Contents of shared directory: ***
[2025-11-21 14:52:13] total 1302880
[2025-11-21 14:52:13] -rw-r--r-- 2 boincer umatlas 410750872 Nov 21 00:05 ATLAS.root_0
[2025-11-21 14:52:13] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 00:05 start_atlas.sh
[2025-11-21 14:52:13] -rw-r--r-- 2 boincer umatlas    590100 Nov 21 00:05 input.tar.gz
[2025-11-21 14:52:13] -rw------- 1 boincer umatlas 913686337 Nov 21 14:43 HITS.pool.root.1
[2025-11-21 14:52:13] -rw------- 1 boincer umatlas   9093120 Nov 21 14:52 result.tar.gz
14:52:15 (356238): run_atlas exited; CPU time 260401.836263
14:52:15 (356238): called boinc_finish(0)

</stderr_txt>
]]>

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