Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:43:18 (2919840): wrapper (7.7.26015): starting
23:43:18 (2919840): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 23:43:18] Arguments: --nthreads 4
[2025-11-21 23:43:18] Threads: 4
[2025-11-21 23:43:18] Checking for CVMFS
[2025-11-21 23:43:18] No cvmfs_config command found, will try listing directly
[2025-11-21 23:43:18] CVMFS is ok
[2025-11-21 23:43:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 23:43:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 23:43:18] Further information can be found at the LHC@home message board.
[2025-11-21 23:43:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 23:43:18] Checking for apptainer binary...
[2025-11-21 23:43:18] which: no apptainer in ((null))
[2025-11-21 23:43:18] apptainer is not installed, using version from CVMFS
[2025-11-21 23:43:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 23:43:18] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot120/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-11-21 23:43:18] apptainer works
[2025-11-21 23:43:18] Set ATHENA_PROC_NUMBER=4
[2025-11-21 23:43:18] Set ATHENA_CORE_NUMBER=4
[2025-11-21 23:43:18] Starting ATLAS job with PandaID=6893877260
[2025-11-21 23:43:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot120/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 15:20:07]  *** The last 200 lines of the pilot log: ***
[2025-11-22 15:20:07] 2025-11-22 14:17:17,184 | INFO     | monitor loop #3780: job 0:6893877260 is in state 'finished'
[2025-11-22 15:20:07] 2025-11-22 14:17:17,185 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:20:07] 2025-11-22 14:17:17,774 | INFO     | time since job start (56025s) is within the limit (172800.0s)
[2025-11-22 15:20:07] 2025-11-22 14:17:18,499 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 15:20:07] 2025-11-22 14:17:18,518 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2724.6899609375027
[2025-11-22 15:20:07] 2025-11-22 14:17:18,540 | INFO     | using path: /scratch/boinc/var/slot120/slots/0/PanDA_Pilot-6893877260/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 15:20:07] 2025-11-22 14:17:18,540 | INFO     | extracted standard info from prmon json
[2025-11-22 15:20:07] 2025-11-22 14:17:18,541 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 15:20:07] 2025-11-22 14:17:18,541 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 15:20:07] 2025-11-22 14:17:18,555 | INFO     | fitting pss+swap vs Time
[2025-11-22 15:20:07] 2025-11-22 14:17:18,556 | INFO     | sum of square deviations: 239886579649.5
[2025-11-22 15:20:07] 2025-11-22 14:17:18,572 | INFO     | sum of deviations: 669401192378.9999
[2025-11-22 15:20:07] 2025-11-22 14:17:18,573 | INFO     | mean x: 1763793016.5
[2025-11-22 15:20:07] 2025-11-22 14:17:18,573 | INFO     | mean y: 2270437.1590413945
[2025-11-22 15:20:07] 2025-11-22 14:17:18,573 | INFO     | intersect: -4919577004.577635
[2025-11-22 15:20:07] 2025-11-22 14:17:18,574 | INFO     | chi2: 4.5275684073635825
[2025-11-22 15:20:07] 2025-11-22 14:17:18,575 | INFO     | sum of square deviations: 235988171672.0
[2025-11-22 15:20:07] 2025-11-22 14:17:18,592 | INFO     | sum of deviations: 877419767636.9999
[2025-11-22 15:20:07] 2025-11-22 14:17:18,592 | INFO     | mean x: 1763792864.0
[2025-11-22 15:20:07] 2025-11-22 14:17:18,593 | INFO     | mean y: 2278571.182913472
[2025-11-22 15:20:07] 2025-11-22 14:17:18,593 | INFO     | intersect: -6555620979.145692
[2025-11-22 15:20:07] 2025-11-22 14:17:18,594 | INFO     | chi2: 2.0099289475903075
[2025-11-22 15:20:07] 2025-11-22 14:17:18,594 | INFO     | current chi2=2.0099289475903075 (change=55.60687842239152 %)
[2025-11-22 15:20:07] 2025-11-22 14:17:18,595 | INFO     | sum of square deviations: 232132229607.0
[2025-11-22 15:20:07] 2025-11-22 14:17:18,612 | INFO     | sum of deviations: 912741879003.0001
[2025-11-22 15:20:07] 2025-11-22 14:17:18,612 | INFO     | mean x: 1763792711.5
[2025-11-22 15:20:07] 2025-11-22 14:17:18,612 | INFO     | mean y: 2279964.085903084
[2025-11-22 15:20:07] 2025-11-22 14:17:18,612 | INFO     | intersect: -6932937417.799615
[2025-11-22 15:20:07] 2025-11-22 14:17:18,613 | INFO     | chi2: 1.846792456616923
[2025-11-22 15:20:07] 2025-11-22 14:17:18,613 | INFO     | current chi2=1.846792456616923 (change=8.116530246950669 %)
[2025-11-22 15:20:07] 2025-11-22 14:17:18,613 | INFO     | right removable region: 907
[2025-11-22 15:20:07] 2025-11-22 14:17:18,614 | INFO     | sum of square deviations: 235988171672.0
[2025-11-22 15:20:07] 2025-11-22 14:17:18,632 | INFO     | sum of deviations: 512807617311.0
[2025-11-22 15:20:07] 2025-11-22 14:17:18,632 | INFO     | mean x: 1763793169.0
[2025-11-22 15:20:07] 2025-11-22 14:17:18,632 | INFO     | mean y: 2276549.852135816
[2025-11-22 15:20:07] 2025-11-22 14:17:18,632 | INFO     | intersect: -3830485770.4621806
[2025-11-22 15:20:07] 2025-11-22 14:17:18,633 | INFO     | chi2: 2.774288036287673
[2025-11-22 15:20:07] 2025-11-22 14:17:18,633 | INFO     | current chi2=2.774288036287673 (change=38.724547335925294 %)
[2025-11-22 15:20:07] 2025-11-22 14:17:18,634 | INFO     | sum of square deviations: 232132229607.0
[2025-11-22 15:20:07] 2025-11-22 14:17:18,651 | INFO     | sum of deviations: 487636982930.49994
[2025-11-22 15:20:07] 2025-11-22 14:17:18,651 | INFO     | mean x: 1763793321.5
[2025-11-22 15:20:07] 2025-11-22 14:17:18,651 | INFO     | mean y: 2277546.0781938327
[2025-11-22 15:20:07] 2025-11-22 14:17:18,651 | INFO     | intersect: -3702898832.3392267
[2025-11-22 15:20:07] 2025-11-22 14:17:18,652 | INFO     | chi2: 2.7578364035093283
[2025-11-22 15:20:07] 2025-11-22 14:17:18,652 | INFO     | current chi2=2.7578364035093283 (change=0.5930037747759986 %)
[2025-11-22 15:20:07] 2025-11-22 14:17:18,652 | INFO     | left removable region: 20
[2025-11-22 15:20:07] 2025-11-22 14:17:18,653 | INFO     | sum of square deviations: 216395752228.0
[2025-11-22 15:20:07] 2025-11-22 14:17:18,671 | INFO     | sum of deviations: 682436504540.9996
[2025-11-22 15:20:07] 2025-11-22 14:17:18,671 | INFO     | mean x: 1763793291.0
[2025-11-22 15:20:07] 2025-11-22 14:17:18,671 | INFO     | mean y: 2288977.404735062
[2025-11-22 15:20:07] 2025-11-22 14:17:18,671 | INFO     | intersect: -5560098065.085277
[2025-11-22 15:20:07] 2025-11-22 14:17:18,672 | INFO     | chi2: 0.051089561475131
[2025-11-22 15:20:07] 2025-11-22 14:17:18,672 | INFO     | current memory leak: 3.15 B/s (using 887 data points, chi2=0.05)
[2025-11-22 15:20:07] 2025-11-22 14:17:18,673 | INFO     | could have reported an average CPU frequency of 2684 MHz (34 samples)
[2025-11-22 15:20:07] 2025-11-22 14:17:18,673 | INFO     | ..............................
[2025-11-22 15:20:07] 2025-11-22 14:17:18,673 | INFO     | . Timing measurements:
[2025-11-22 15:20:07] 2025-11-22 14:17:18,673 | INFO     | . get job = 0 s
[2025-11-22 15:20:07] 2025-11-22 14:17:18,673 | INFO     | . initial setup = 1 s
[2025-11-22 15:20:07] 2025-11-22 14:17:18,673 | INFO     | . payload setup = 9 s
[2025-11-22 15:20:07] 2025-11-22 14:17:18,673 | INFO     | . stage-in = 0 s
[2025-11-22 15:20:07] 2025-11-22 14:17:18,673 | INFO     | . payload execution = 55980 s
[2025-11-22 15:20:07] 2025-11-22 14:17:18,674 | INFO     | . stage-out = 2 s
[2025-11-22 15:20:07] 2025-11-22 14:17:18,674 | INFO     | . log creation = 0 s
[2025-11-22 15:20:07] 2025-11-22 14:17:18,674 | INFO     | ..............................
[2025-11-22 15:20:07] 2025-11-22 14:17:18,784 | INFO     | 
[2025-11-22 15:20:07] 2025-11-22 14:17:18,785 | INFO     | job summary report
[2025-11-22 15:20:07] 2025-11-22 14:17:18,785 | INFO     | --------------------------------------------------
[2025-11-22 15:20:07] 2025-11-22 14:17:18,785 | INFO     | PanDA job id: 6893877260
[2025-11-22 15:20:07] 2025-11-22 14:17:18,785 | INFO     | task id: 47523449
[2025-11-22 15:20:07] 2025-11-22 14:17:18,785 | INFO     | errors: (none)
[2025-11-22 15:20:07] 2025-11-22 14:17:18,785 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 15:20:07] 2025-11-22 14:17:18,785 | INFO     | pilot state: finished 
[2025-11-22 15:20:07] 2025-11-22 14:17:18,785 | INFO     | transexitcode: 0
[2025-11-22 15:20:07] 2025-11-22 14:17:18,786 | INFO     | exeerrorcode: 0
[2025-11-22 15:20:07] 2025-11-22 14:17:18,786 | INFO     | exeerrordiag: 
[2025-11-22 15:20:07] 2025-11-22 14:17:18,786 | INFO     | exitcode: 0
[2025-11-22 15:20:07] 2025-11-22 14:17:18,786 | INFO     | exitmsg: OK
[2025-11-22 15:20:07] 2025-11-22 14:17:18,786 | INFO     | cpuconsumptiontime: 221492 s
[2025-11-22 15:20:07] 2025-11-22 14:17:18,786 | INFO     | nevents: 1000
[2025-11-22 15:20:07] 2025-11-22 14:17:18,786 | INFO     | neventsw: 0
[2025-11-22 15:20:07] 2025-11-22 14:17:18,786 | INFO     | pid: 2931211
[2025-11-22 15:20:07] 2025-11-22 14:17:18,786 | INFO     | pgrp: 2931211
[2025-11-22 15:20:07] 2025-11-22 14:17:18,786 | INFO     | corecount: 4
[2025-11-22 15:20:07] 2025-11-22 14:17:18,786 | INFO     | event service: False
[2025-11-22 15:20:07] 2025-11-22 14:17:18,787 | INFO     | sizes: {0: 2298596, 1: 2298795, 7: 2299057, 11: 2299085, 55993: 2352074, 55994: 2352073, 55997: 2361275, 56000: 2361331, 56008: 2361577}
[2025-11-22 15:20:07] 2025-11-22 14:17:18,787 | INFO     | --------------------------------------------------
[2025-11-22 15:20:07] 2025-11-22 14:17:18,787 | INFO     | 
[2025-11-22 15:20:07] 2025-11-22 14:17:18,787 | INFO     | executing command: ls -lF /scratch/boinc/var/slot120/slots/0
[2025-11-22 15:20:07] 2025-11-22 14:17:18,814 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,814 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,814 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,814 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,815 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,815 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,815 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,815 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,815 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,815 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,815 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,815 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,815 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,815 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,815 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,815 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,816 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,816 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 15:20:07] 2025-11-22 14:17:18,816 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,816 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 15:20:07] 2025-11-22 14:17:18,816 | INFO     | job 6893877260 has completed (purged errors)
[2025-11-22 15:20:07] 2025-11-22 14:17:18,816 | INFO     | overall cleanup function is called
[2025-11-22 15:20:07] 2025-11-22 14:17:19,832 | INFO     | --- collectZombieJob: --- 10, [2931211]
[2025-11-22 15:20:07] 2025-11-22 14:17:19,833 | INFO     | zombie collector waiting for pid 2931211
[2025-11-22 15:20:07] 2025-11-22 14:17:19,833 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 15:20:07] 2025-11-22 14:17:19,833 | INFO     | collected zombie processes
[2025-11-22 15:20:07] 2025-11-22 14:17:19,833 | INFO     | will attempt to kill all subprocesses of pid=2931211
[2025-11-22 15:20:07] 2025-11-22 14:17:20,592 | INFO     | process IDs to be killed: [2931211] (in reverse order)
[2025-11-22 15:20:07] 2025-11-22 14:17:20,841 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 15:20:07] 2025-11-22 14:17:20,841 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 15:20:07] 2025-11-22 14:17:20,872 | INFO     | did not find any defunct processes belonging to 2931211
[2025-11-22 15:20:07] 2025-11-22 14:17:20,901 | INFO     | did not find any defunct processes belonging to 2931211
[2025-11-22 15:20:07] 2025-11-22 14:17:20,902 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 15:20:07] 2025-11-22 14:17:20,902 | INFO     | ready for new job
[2025-11-22 15:20:07] 2025-11-22 14:17:20,903 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 15:20:07] 2025-11-22 14:17:20,908 | INFO     | ***************************************
[2025-11-22 15:20:07] 2025-11-22 14:17:20,908 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 15:20:07] 2025-11-22 14:17:20,908 | INFO     | ***************************************
[2025-11-22 15:20:07] 2025-11-22 14:17:20,908 | INFO     | 
[2025-11-22 15:20:07] 2025-11-22 14:17:20,917 | INFO     | architecture information:
[2025-11-22 15:20:07] 2025-11-22 14:17:20,917 | INFO     | executing command: cat /etc/os-release
[2025-11-22 15:20:07] 2025-11-22 14:17:20,938 | INFO     | cat /etc/os-release:
[2025-11-22 15:20:07] NAME="CentOS Linux"
[2025-11-22 15:20:07] VERSION="7 (Core)"
[2025-11-22 15:20:07] ID="centos"
[2025-11-22 15:20:07] ID_LIKE="rhel fedora"
[2025-11-22 15:20:07] VERSION_ID="7"
[2025-11-22 15:20:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 15:20:07] ANSI_COLOR="0;31"
[2025-11-22 15:20:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 15:20:07] HOME_URL="https://www.centos.org/"
[2025-11-22 15:20:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 15:20:07] 
[2025-11-22 15:20:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 15:20:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 15:20:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 15:20:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 15:20:07] 
[2025-11-22 15:20:07] 2025-11-22 14:17:20,938 | INFO     | ***************************************
[2025-11-22 15:20:07] 2025-11-22 14:17:21,441 | INFO     | executing command: df -mP /scratch/boinc/var/slot120/slots/0
[2025-11-22 15:20:07] 2025-11-22 14:17:21,462 | INFO     | sufficient remaining disk space (3309830144000 B)
[2025-11-22 15:20:07] 2025-11-22 14:17:21,463 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 15:20:07] 2025-11-22 14:17:21,463 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 15:20:07] 2025-11-22 14:17:21,463 | INFO     | update_server=False
[2025-11-22 15:20:07] 2025-11-22 14:17:21,463 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 15:20:07] 2025-11-22 14:17:21,463 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 15:20:07] 2025-11-22 14:17:21,464 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:20:07] 2025-11-22 14:17:21,464 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 15:20:07] 2025-11-22 14:17:21,465 | INFO     | aborting loop
[2025-11-22 15:20:07] 2025-11-22 14:17:21,526 | INFO     | all payload control threads have been joined
[2025-11-22 15:20:07] 2025-11-22 14:17:22,469 | INFO     | [job] retrieve thread has finished
[2025-11-22 15:20:07] 2025-11-22 14:17:22,470 | INFO     | [job] job monitor thread has finished
[2025-11-22 15:20:07] 2025-11-22 14:17:22,523 | INFO     | [payload] failed_post thread has finished
[2025-11-22 15:20:07] 2025-11-22 14:17:22,532 | INFO     | [payload] control thread has finished
[2025-11-22 15:20:07] 2025-11-22 14:17:22,561 | INFO     | all data control threads have been joined
[2025-11-22 15:20:07] 2025-11-22 14:17:22,586 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 15:20:07] 2025-11-22 14:17:22,614 | INFO     | all job control threads have been joined
[2025-11-22 15:20:07] 2025-11-22 14:17:22,772 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 15:20:07] 2025-11-22 14:17:22,923 | INFO     | [data] copytool_in thread has finished
[2025-11-22 15:20:07] 2025-11-22 14:17:23,183 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 15:20:07] 2025-11-22 14:17:23,363 | INFO     | [payload] validate_post thread has finished
[2025-11-22 15:20:07] 2025-11-22 14:17:23,470 | INFO     | [data] copytool_out thread has finished
[2025-11-22 15:20:07] 2025-11-22 14:17:23,480 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 15:20:07] 2025-11-22 14:17:23,565 | INFO     | [data] control thread has finished
[2025-11-22 15:20:07] 2025-11-22 14:17:23,620 | INFO     | [job] control thread has finished
[2025-11-22 15:20:07] 2025-11-22 14:17:23,752 | INFO     | [job] validate thread has finished
[2025-11-22 15:20:07] 2025-11-22 14:17:23,772 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:20:07] 2025-11-22 14:17:24,778 | INFO     | [job] queue monitor thread has finished
[2025-11-22 15:20:07] 2025-11-22 14:17:25,470 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 15:20:07] 2025-11-22 14:17:51,799 | INFO     | PID=2923857 has CPU usage=11.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-22 15:20:07] 2025-11-22 14:17:51,799 | INFO     | .. there are 7 such processes running
[2025-11-22 15:20:07] 2025-11-22 14:17:51,800 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 15:20:07] 2025-11-22 14:17:51,800 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 15:20:07] 2025-11-22 14:17:51,800 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 15:20:07] 2025-11-22 14:18:03,492 | INFO     | [monitor] cgroup control has ended
[2025-11-22 15:20:07] 2025-11-22 14:18:05,343 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22396977690432)>', '<ExcThread(monitor, started 22396736071424)>']
[2025-11-22 15:20:07] 2025-11-22 14:18:05,861 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 15:20:07] 2025-11-22 14:18:05,861 | INFO     | [monitor] control thread has ended
[2025-11-22 15:20:07] 2025-11-22 14:18:10,367 | INFO     | all workflow threads have been joined
[2025-11-22 15:20:07] 2025-11-22 14:18:10,370 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 15:20:07] 2025-11-22 14:18:10,370 | INFO     | traces error code: 0
[2025-11-22 15:20:07] 2025-11-22 14:18:10,370 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 15:20:07] 2025-11-22 14:18:10,521 [wrapper] ==== pilot stdout END ====
[2025-11-22 15:20:07] 2025-11-22 14:18:10,525 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 15:20:07] 2025-11-22 14:18:10,529 [wrapper] pilotpid: 2923857
[2025-11-22 15:20:07] 2025-11-22 14:18:10,532 [wrapper] Pilot exit status: 0
[2025-11-22 15:20:07] 2025-11-22 14:18:10,549 [wrapper] pandaids: 6893877260
[2025-11-22 15:20:07] 2025-11-22 14:18:10,734 [wrapper] cleanup supervisor_pilot   59124 2923858
[2025-11-22 15:20:07] 2025-11-22 14:18:10,738 [wrapper] Test setup, not cleaning
[2025-11-22 15:20:07] 2025-11-22 14:18:10,742 [wrapper] apfmon messages muted
[2025-11-22 15:20:07] 2025-11-22 14:18:10,746 [wrapper] ==== wrapper stdout END ====
[2025-11-22 15:20:07] 2025-11-22 14:18:10,750 [wrapper] ==== wrapper stderr END ====
[2025-11-22 15:20:07]  *** Error codes and diagnostics ***
[2025-11-22 15:20:07]     "exeErrorCode": 0,
[2025-11-22 15:20:07]     "exeErrorDiag": "",
[2025-11-22 15:20:07]     "pilotErrorCode": 0,
[2025-11-22 15:20:07]     "pilotErrorDiag": "",
[2025-11-22 15:20:07]  *** Listing of results directory ***
[2025-11-22 15:20:07] total 1319156
[2025-11-22 15:20:07] -rw-r--r-- 1 boinc boinc    576529 Nov 20 19:04 pilot3.tar.gz
[2025-11-22 15:20:07] -rw-r--r-- 1 boinc boinc      5112 Nov 20 19:23 queuedata.json
[2025-11-22 15:20:07] -rwx------ 1 boinc boinc     36292 Nov 20 19:27 runpilot2-wrapper.sh
[2025-11-22 15:20:07] -rw-r--r-- 1 boinc boinc       100 Nov 21 23:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 15:20:07] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 23:43 run_atlas
[2025-11-22 15:20:07] -rw-r--r-- 1 boinc boinc       105 Nov 21 23:43 job.xml
[2025-11-22 15:20:07] -rw-r--r-- 1 boinc boinc      6688 Nov 21 23:43 init_data.xml
[2025-11-22 15:20:07] -rw-r--r-- 2 boinc boinc 408067932 Nov 21 23:43 EVNT.47493127._000795.pool.root.1
[2025-11-22 15:20:07] -rw-r--r-- 2 boinc boinc     15847 Nov 21 23:43 start_atlas.sh
[2025-11-22 15:20:07] drwxrwx--x 2 boinc boinc      4096 Nov 21 23:43 shared
[2025-11-22 15:20:07] -rw-r--r-- 2 boinc boinc    590104 Nov 21 23:43 input.tar.gz
[2025-11-22 15:20:07] -rw-r--r-- 1 boinc boinc         0 Nov 21 23:43 boinc_lockfile
[2025-11-22 15:20:07] -rw-r--r-- 1 boinc boinc      2784 Nov 21 23:43 pandaJob.out
[2025-11-22 15:20:07] -rw------- 1 boinc boinc    989798 Nov 21 23:43 agis_schedconf.cvmfs.json
[2025-11-22 15:20:07] drwx------ 5 boinc boinc      4096 Nov 21 23:43 pilot3
[2025-11-22 15:20:07] -rw-r--r-- 1 boinc boinc       532 Nov 22 15:07 boinc_task_state.xml
[2025-11-22 15:20:07] -rw------- 1 boinc boinc 920020434 Nov 22 15:16 HITS.47523449._007943.pool.root.1
[2025-11-22 15:20:07] -rw------- 1 boinc boinc      1038 Nov 22 15:17 memory_monitor_summary.json
[2025-11-22 15:20:07] -rw------- 1 boinc boinc   1526164 Nov 22 15:17 agis_ddmendpoints.agis.ALL.json
[2025-11-22 15:20:07] -rw------- 1 boinc boinc   1668006 Nov 22 15:17 log.47523449._007943.job.log.tgz.1
[2025-11-22 15:20:07] -rw------- 1 boinc boinc      8606 Nov 22 15:17 heartbeat.json
[2025-11-22 15:20:07] -rw------- 1 boinc boinc        95 Nov 22 15:17 pilot_heartbeat.json
[2025-11-22 15:20:07] -rw------- 1 boinc boinc      4836 Nov 22 15:18 pilotlog.txt
[2025-11-22 15:20:07] -rw------- 1 boinc boinc   7735054 Nov 22 15:18 log.47523449._007943.job.log.1
[2025-11-22 15:20:07] -rw------- 1 boinc boinc       353 Nov 22 15:18 output.list
[2025-11-22 15:20:07] -rw-r--r-- 1 boinc boinc       620 Nov 22 15:18 runtime_log
[2025-11-22 15:20:07] -rw------- 1 boinc boinc   9420800 Nov 22 15:18 result.tar.gz
[2025-11-22 15:20:07] -rw-r--r-- 1 boinc boinc      9223 Nov 22 15:18 runtime_log.err
[2025-11-22 15:20:07] -rw------- 1 boinc boinc       670 Nov 22 15:18 bJNLDmWYOg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkOIKDmyLsFFo.diag
[2025-11-22 15:20:07] -rw-r--r-- 1 boinc boinc      8192 Nov 22 15:20 boinc_mmap_file
[2025-11-22 15:20:07] -rw-r--r-- 1 boinc boinc        28 Nov 22 15:20 wrapper_checkpoint.txt
[2025-11-22 15:20:07] -rw-r--r-- 1 boinc boinc     21084 Nov 22 15:20 stderr.txt
[2025-11-22 15:20:07] HITS file was successfully produced:
[2025-11-22 15:20:07] -rw------- 1 boinc boinc 920020434 Nov 22 15:16 shared/HITS.pool.root.1
[2025-11-22 15:20:07]  *** Contents of shared directory: ***
[2025-11-22 15:20:07] total 1306768
[2025-11-22 15:20:07] -rw-r--r-- 2 boinc boinc 408067932 Nov 21 23:43 ATLAS.root_0
[2025-11-22 15:20:07] -rw-r--r-- 2 boinc boinc     15847 Nov 21 23:43 start_atlas.sh
[2025-11-22 15:20:07] -rw-r--r-- 2 boinc boinc    590104 Nov 21 23:43 input.tar.gz
[2025-11-22 15:20:07] -rw------- 1 boinc boinc 920020434 Nov 22 15:16 HITS.pool.root.1
[2025-11-22 15:20:07] -rw------- 1 boinc boinc   9420800 Nov 22 15:18 result.tar.gz
15:20:09 (2919840): run_atlas exited; CPU time 224439.163092
15:20:09 (2919840): called boinc_finish(0)

</stderr_txt>
]]>

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