Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
21:51:51 (1894794): wrapper (7.7.26015): starting
21:51:51 (1894794): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 21:51:51] Arguments: --nthreads 8
[2025-11-21 21:51:51] Threads: 8
[2025-11-21 21:51:51] Checking for CVMFS
[2025-11-21 21:51:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:51:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:51:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:51:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:51:54] 2.13.3.0 4524 1549 58224 153161 0 90 1391089 4096000 10366 130560 0 172549901 99.996 563646 849 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-11-21 21:51:54] CVMFS is ok
[2025-11-21 21:51:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 21:51:54] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-21 21:51:54] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-21 21:51:54] Further information can be found at the LHC@home message board.
[2025-11-21 21:51:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:51:54] Checking for apptainer binary...
[2025-11-21 21:51:54] apptainer is not installed, using version from CVMFS
[2025-11-21 21:51:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:51:54] 7950x-linux
[2025-11-21 21:51:54] apptainer works
[2025-11-21 21:51:54] Set ATHENA_PROC_NUMBER=8
[2025-11-21 21:51:54] Set ATHENA_CORE_NUMBER=8
[2025-11-21 21:51:54] Starting ATLAS job with PandaID=6894238032
[2025-11-21 21:51:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc503/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 19:58:06]  *** The last 200 lines of the pilot log: ***
[2025-11-22 19:58:06] 2025-11-23 03:57:27,903 | INFO     | job 6894238032 has state=finished
[2025-11-22 19:58:06] 2025-11-23 03:57:27,903 | INFO     | preparing for final server update for job 6894238032 in state='finished'
[2025-11-22 19:58:06] 2025-11-23 03:57:27,904 | INFO     | this job has now completed (state=finished)
[2025-11-22 19:58:06] 2025-11-23 03:57:27,904 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-22 19:58:06] 2025-11-23 03:57:27,904 | INFO     | log transfer has been attempted: DONE
[2025-11-22 19:58:06] 2025-11-23 03:57:27,904 | INFO     | job 6894238032 has finished - writing final server update
[2025-11-22 19:58:06] 2025-11-23 03:57:27,904 | INFO     | total number of processed events: 1000 (read)
[2025-11-22 19:58:06] 2025-11-23 03:57:27,904 | INFO     | executing command: lscpu
[2025-11-22 19:58:06] 2025-11-23 03:57:27,936 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-22 19:58:06] 2025-11-23 03:57:28,233 | INFO     | monitor loop #5576: job 0:6894238032 is in state 'finished'
[2025-11-22 19:58:06] 2025-11-23 03:57:28,234 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:58:06] 2025-11-23 03:57:28,503 | INFO     | time since job start (79505s) is within the limit (172800.0s)
[2025-11-22 19:58:06] 2025-11-23 03:57:30,508 | INFO     | time since job start (79507s) is within the limit (172800.0s)
[2025-11-22 19:58:06] 2025-11-23 03:57:30,736 | INFO     | monitor loop #5577: job 0:6894238032 is in state 'finished'
[2025-11-22 19:58:06] 2025-11-23 03:57:30,737 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:58:06] 2025-11-23 03:57:32,502 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 19:58:06] 2025-11-23 03:57:32,505 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3999.8602499999997
[2025-11-22 19:58:06] 2025-11-23 03:57:32,510 | INFO     | using path: /var/lib/multiboinc/boinc503/slots/6/PanDA_Pilot-6894238032/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 19:58:06] 2025-11-23 03:57:32,511 | INFO     | extracted standard info from prmon json
[2025-11-22 19:58:06] 2025-11-23 03:57:32,511 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 19:58:06] 2025-11-23 03:57:32,511 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 19:58:06] 2025-11-23 03:57:32,515 | INFO     | time since job start (79509s) is within the limit (172800.0s)
[2025-11-22 19:58:06] 2025-11-23 03:57:32,526 | INFO     | fitting pss+swap vs Time
[2025-11-22 19:58:06] 2025-11-23 03:57:32,527 | INFO     | sum of square deviations: 685979700522.5165
[2025-11-22 19:58:06] 2025-11-23 03:57:32,549 | INFO     | sum of deviations: 9644135036273.082
[2025-11-22 19:58:06] 2025-11-23 03:57:32,549 | INFO     | mean x: 1763830487.150422
[2025-11-22 19:58:06] 2025-11-23 03:57:32,549 | INFO     | mean y: 3542254.2801227937
[2025-11-22 19:58:06] 2025-11-23 03:57:32,549 | INFO     | intersect: -24794012813.627678
[2025-11-22 19:58:06] 2025-11-23 03:57:32,550 | INFO     | chi2: 13.571035008816118
[2025-11-22 19:58:06] 2025-11-23 03:57:32,551 | INFO     | sum of square deviations: 678113091874.9039
[2025-11-22 19:58:06] 2025-11-23 03:57:32,569 | INFO     | sum of deviations: 10078331640287.83
[2025-11-22 19:58:06] 2025-11-23 03:57:32,569 | INFO     | mean x: 1763830334.6510015
[2025-11-22 19:58:06] 2025-11-23 03:57:32,569 | INFO     | mean y: 3550665.745762712
[2025-11-22 19:58:06] 2025-11-23 03:57:32,569 | INFO     | intersect: -26211054660.134018
[2025-11-22 19:58:06] 2025-11-23 03:57:32,570 | INFO     | chi2: 10.983165052605
[2025-11-22 19:58:06] 2025-11-23 03:57:32,570 | INFO     | current chi2=10.983165052605 (change=19.069068457416588 %)
[2025-11-22 19:58:06] 2025-11-23 03:57:32,570 | INFO     | right removable region: 1297
[2025-11-22 19:58:06] 2025-11-23 03:57:32,570 | INFO     | sum of square deviations: 678112972314.904
[2025-11-22 19:58:06] 2025-11-23 03:57:32,588 | INFO     | sum of deviations: 9127128350944.84
[2025-11-22 19:58:06] 2025-11-23 03:57:32,589 | INFO     | mean x: 1763830639.6510015
[2025-11-22 19:58:06] 2025-11-23 03:57:32,589 | INFO     | mean y: 3552271.0747303544
[2025-11-22 19:58:06] 2025-11-23 03:57:32,589 | INFO     | intersect: -23736899976.08839
[2025-11-22 19:58:06] 2025-11-23 03:57:32,589 | INFO     | chi2: 10.946133908662622
[2025-11-22 19:58:06] 2025-11-23 03:57:32,589 | INFO     | current chi2=10.946133908662622 (change=19.34193743106762 %)
[2025-11-22 19:58:06] 2025-11-23 03:57:32,589 | INFO     | left removable region: 10
[2025-11-22 19:58:06] 2025-11-23 03:57:32,590 | INFO     | sum of square deviations: 661018500034.1488
[2025-11-22 19:58:06] 2025-11-23 03:57:32,608 | INFO     | sum of deviations: 9324163416850.58
[2025-11-22 19:58:06] 2025-11-23 03:57:32,608 | INFO     | mean x: 1763830609.1522923
[2025-11-22 19:58:06] 2025-11-23 03:57:32,608 | INFO     | mean y: 3566317.5275835274
[2025-11-22 19:58:06] 2025-11-23 03:57:32,608 | INFO     | intersect: -24876591860.389446
[2025-11-22 19:58:06] 2025-11-23 03:57:32,609 | INFO     | chi2: 7.951089581377406
[2025-11-22 19:58:06] 2025-11-23 03:57:32,609 | INFO     | current memory leak: 14.11 B/s (using 1287 data points, chi2=7.95)
[2025-11-22 19:58:06] 2025-11-23 03:57:32,610 | INFO     | could have reported an average CPU frequency of 3999 MHz (47 samples)
[2025-11-22 19:58:06] 2025-11-23 03:57:32,610 | INFO     | ..............................
[2025-11-22 19:58:06] 2025-11-23 03:57:32,610 | INFO     | . Timing measurements:
[2025-11-22 19:58:06] 2025-11-23 03:57:32,610 | INFO     | . get job = 0 s
[2025-11-22 19:58:06] 2025-11-23 03:57:32,610 | INFO     | . initial setup = 3 s
[2025-11-22 19:58:06] 2025-11-23 03:57:32,610 | INFO     | . payload setup = 7 s
[2025-11-22 19:58:06] 2025-11-23 03:57:32,610 | INFO     | . stage-in = 0 s
[2025-11-22 19:58:06] 2025-11-23 03:57:32,610 | INFO     | . payload execution = 79469 s
[2025-11-22 19:58:06] 2025-11-23 03:57:32,610 | INFO     | . stage-out = 3 s
[2025-11-22 19:58:06] 2025-11-23 03:57:32,610 | INFO     | . log creation = 0 s
[2025-11-22 19:58:06] 2025-11-23 03:57:32,610 | INFO     | ..............................
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | 
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | job summary report
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | --------------------------------------------------
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | PanDA job id: 6894238032
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | task id: 47533967
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | errors: (none)
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | pilot state: finished 
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | transexitcode: 0
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | exeerrorcode: 0
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | exeerrordiag: 
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | exitcode: 0
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | exitmsg: OK
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | cpuconsumptiontime: 135650 s
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | nevents: 1000
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | neventsw: 0
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | pid: 1997098
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | pgrp: 1997098
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | corecount: 8
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | event service: False
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | sizes: {0: 2298768, 1: 2298768, 6: 2299058, 11: 2299086, 79481: 2361679, 79485: 2370701, 79486: 2370885, 79492: 2371131}
[2025-11-22 19:58:06] 2025-11-23 03:57:32,671 | INFO     | --------------------------------------------------
[2025-11-22 19:58:06] 2025-11-23 03:57:32,672 | INFO     | 
[2025-11-22 19:58:06] 2025-11-23 03:57:32,672 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc503/slots/6
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,691 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 19:58:06] 2025-11-23 03:57:32,692 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,692 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 19:58:06] 2025-11-23 03:57:32,692 | INFO     | job 6894238032 has completed (purged errors)
[2025-11-22 19:58:06] 2025-11-23 03:57:32,692 | INFO     | overall cleanup function is called
[2025-11-22 19:58:06] 2025-11-23 03:57:33,724 | INFO     | --- collectZombieJob: --- 10, [1997098]
[2025-11-22 19:58:06] 2025-11-23 03:57:33,725 | INFO     | zombie collector waiting for pid 1997098
[2025-11-22 19:58:06] 2025-11-23 03:57:33,725 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 19:58:06] 2025-11-23 03:57:33,725 | INFO     | collected zombie processes
[2025-11-22 19:58:06] 2025-11-23 03:57:33,725 | INFO     | will attempt to kill all subprocesses of pid=1997098
[2025-11-22 19:58:06] 2025-11-23 03:57:33,988 | INFO     | process IDs to be killed: [1997098] (in reverse order)
[2025-11-22 19:58:06] 2025-11-23 03:57:34,132 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 19:58:06] 2025-11-23 03:57:34,132 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 19:58:06] 2025-11-23 03:57:34,137 | INFO     | did not find any defunct processes belonging to 1997098
[2025-11-22 19:58:06] 2025-11-23 03:57:34,141 | INFO     | did not find any defunct processes belonging to 1997098
[2025-11-22 19:58:06] 2025-11-23 03:57:34,144 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 19:58:06] 2025-11-23 03:57:34,144 | INFO     | ready for new job
[2025-11-22 19:58:06] 2025-11-23 03:57:34,144 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 19:58:06] 2025-11-23 03:57:34,147 | INFO     | ***************************************
[2025-11-22 19:58:06] 2025-11-23 03:57:34,147 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 19:58:06] 2025-11-23 03:57:34,147 | INFO     | ***************************************
[2025-11-22 19:58:06] 2025-11-23 03:57:34,147 | INFO     | 
[2025-11-22 19:58:06] 2025-11-23 03:57:34,148 | INFO     | architecture information:
[2025-11-22 19:58:06] 2025-11-23 03:57:34,149 | INFO     | executing command: cat /etc/os-release
[2025-11-22 19:58:06] 2025-11-23 03:57:34,172 | INFO     | cat /etc/os-release:
[2025-11-22 19:58:06] NAME="CentOS Linux"
[2025-11-22 19:58:06] VERSION="7 (Core)"
[2025-11-22 19:58:06] ID="centos"
[2025-11-22 19:58:06] ID_LIKE="rhel fedora"
[2025-11-22 19:58:06] VERSION_ID="7"
[2025-11-22 19:58:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 19:58:06] ANSI_COLOR="0;31"
[2025-11-22 19:58:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 19:58:06] HOME_URL="https://www.centos.org/"
[2025-11-22 19:58:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 19:58:06] 
[2025-11-22 19:58:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 19:58:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 19:58:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 19:58:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 19:58:06] 
[2025-11-22 19:58:06] 2025-11-23 03:57:34,172 | INFO     | ***************************************
[2025-11-22 19:58:06] 2025-11-23 03:57:34,675 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc503/slots/6
[2025-11-22 19:58:06] 2025-11-23 03:57:34,694 | INFO     | sufficient remaining disk space (179247775744 B)
[2025-11-22 19:58:06] 2025-11-23 03:57:34,694 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 19:58:06] 2025-11-23 03:57:34,694 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 19:58:06] 2025-11-23 03:57:34,694 | INFO     | update_server=False
[2025-11-22 19:58:06] 2025-11-23 03:57:34,694 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 19:58:06] 2025-11-23 03:57:34,694 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:58:06] 2025-11-23 03:57:34,694 | INFO     | aborting loop
[2025-11-22 19:58:06] 2025-11-23 03:57:35,231 | INFO     | [monitor] cgroup control has ended
[2025-11-22 19:58:06] 2025-11-23 03:57:35,440 | INFO     | all data control threads have been joined
[2025-11-22 19:58:06] 2025-11-23 03:57:35,623 | INFO     | all job control threads have been joined
[2025-11-22 19:58:06] 2025-11-23 03:57:35,699 | INFO     | [job] retrieve thread has finished
[2025-11-22 19:58:06] 2025-11-23 03:57:35,699 | INFO     | [job] job monitor thread has finished
[2025-11-22 19:58:06] 2025-11-23 03:57:35,701 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 19:58:06] 2025-11-23 03:57:35,746 | INFO     | all payload control threads have been joined
[2025-11-22 19:58:06] 2025-11-23 03:57:35,761 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 19:58:06] 2025-11-23 03:57:36,044 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 19:58:06] 2025-11-23 03:57:36,139 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 19:58:06] 2025-11-23 03:57:36,303 | INFO     | [data] copytool_in thread has finished
[2025-11-22 19:58:06] 2025-11-23 03:57:36,445 | INFO     | [data] control thread has finished
[2025-11-22 19:58:06] 2025-11-23 03:57:36,628 | INFO     | [job] control thread has finished
[2025-11-22 19:58:06] 2025-11-23 03:57:36,751 | INFO     | [payload] control thread has finished
[2025-11-22 19:58:06] 2025-11-23 03:57:36,823 | INFO     | [job] validate thread has finished
[2025-11-22 19:58:06] 2025-11-23 03:57:37,100 | INFO     | [payload] validate_post thread has finished
[2025-11-22 19:58:06] 2025-11-23 03:57:37,105 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 19:58:06] 2025-11-23 03:57:37,132 | INFO     | [payload] failed_post thread has finished
[2025-11-22 19:58:06] 2025-11-23 03:57:37,683 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:58:06] 2025-11-23 03:57:38,049 | INFO     | [data] copytool_out thread has finished
[2025-11-22 19:58:06] 2025-11-23 03:57:38,688 | INFO     | [job] queue monitor thread has finished
[2025-11-22 19:58:06] 2025-11-23 03:57:41,110 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 19:58:06] 2025-11-23 03:57:44,979 | INFO     | job.realtimelogging is not enabled
[2025-11-22 19:58:06] 2025-11-23 03:57:45,984 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 19:58:06] 2025-11-23 03:57:46,711 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124522332358464)>', '<ExcThread(monitor, started 124521705109248)>']
[2025-11-22 19:58:06] 2025-11-23 03:57:51,736 | INFO     | all workflow threads have been joined
[2025-11-22 19:58:06] 2025-11-23 03:57:51,737 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 19:58:06] 2025-11-23 03:57:51,737 | INFO     | traces error code: 0
[2025-11-22 19:58:06] 2025-11-23 03:57:51,737 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 19:58:06] 2025-11-23 03:58:05,998 | INFO     | PID=1932326 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 19:58:06] 2025-11-23 03:58:05,998 | INFO     | .. there are 13 such processes running
[2025-11-22 19:58:06] 2025-11-23 03:58:05,998 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 19:58:06] 2025-11-23 03:58:05,998 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 19:58:06] 2025-11-23 03:58:05,998 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 19:58:06] 2025-11-23 03:58:05,998 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 19:58:06] 2025-11-23 03:58:05,998 | INFO     | [monitor] control thread has ended
[2025-11-22 19:58:06] 2025-11-23 03:58:06,140 [wrapper] ==== pilot stdout END ====
[2025-11-22 19:58:06] 2025-11-23 03:58:06,143 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 19:58:06] 2025-11-23 03:58:06,146 [wrapper] pilotpid: 1932326
[2025-11-22 19:58:06] 2025-11-23 03:58:06,148 [wrapper] Pilot exit status: 0
[2025-11-22 19:58:06] 2025-11-23 03:58:06,157 [wrapper] pandaids: 6894238032
[2025-11-22 19:58:06] 2025-11-23 03:58:06,204 [wrapper] cleanup supervisor_pilot 4065125 1932327
[2025-11-22 19:58:06] 2025-11-23 03:58:06,207 [wrapper] Test setup, not cleaning
[2025-11-22 19:58:06] 2025-11-23 03:58:06,208 [wrapper] apfmon messages muted
[2025-11-22 19:58:06] 2025-11-23 03:58:06,213 [wrapper] ==== wrapper stdout END ====
[2025-11-22 19:58:06] 2025-11-23 03:58:06,215 [wrapper] ==== wrapper stderr END ====
[2025-11-22 19:58:06]  *** Error codes and diagnostics ***
[2025-11-22 19:58:06]     "exeErrorCode": 0,
[2025-11-22 19:58:06]     "exeErrorDiag": "",
[2025-11-22 19:58:06]     "pilotErrorCode": 0,
[2025-11-22 19:58:06]     "pilotErrorDiag": "",
[2025-11-22 19:58:06]  *** Listing of results directory ***
[2025-11-22 19:58:06] total 1326136
[2025-11-22 19:58:06] -rw-r--r-- 1 root root    576529 Nov 20 16:06 pilot3.tar.gz
[2025-11-22 19:58:06] -rw-r--r-- 1 root root      5112 Nov 20 16:17 queuedata.json
[2025-11-22 19:58:06] -rwx------ 1 4871 1028     36292 Nov 20 16:18 runpilot2-wrapper.sh
[2025-11-22 19:58:06] -rw-r--r-- 1 root root       100 Nov 21 21:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 19:58:06] -rwxr-xr-x 1 root root      7986 Nov 21 21:51 run_atlas
[2025-11-22 19:58:06] -rw-r--r-- 1 root root       105 Nov 21 21:51 job.xml
[2025-11-22 19:58:06] -rw-r--r-- 2 root root 409030485 Nov 21 21:51 EVNT.47493127._002040.pool.root.1
[2025-11-22 19:58:06] -rw-r--r-- 1 root root      7071 Nov 21 21:51 init_data.xml
[2025-11-22 19:58:06] drwxrwx--x 2 root root      4096 Nov 21 21:51 shared
[2025-11-22 19:58:06] -rw-r--r-- 2 root root    590104 Nov 21 21:51 input.tar.gz
[2025-11-22 19:58:06] -rw-r--r-- 2 root root     15847 Nov 21 21:51 start_atlas.sh
[2025-11-22 19:58:06] -rw-r--r-- 1 root root         0 Nov 21 21:51 boinc_lockfile
[2025-11-22 19:58:06] -rw-r--r-- 1 root root      2784 Nov 21 21:51 pandaJob.out
[2025-11-22 19:58:06] -rw------- 1 root root    989752 Nov 21 21:52 agis_schedconf.cvmfs.json
[2025-11-22 19:58:06] drwxr-xr-x 5  320  320      4096 Nov 21 21:52 pilot3
[2025-11-22 19:58:06] -rw-r--r-- 1 root root       533 Nov 22 19:50 boinc_task_state.xml
[2025-11-22 19:58:06] -rw------- 1 root root 918068723 Nov 22 19:56 HITS.47533967._000117.pool.root.1
[2025-11-22 19:58:06] -rw------- 1 root root      1065 Nov 22 19:57 memory_monitor_summary.json
[2025-11-22 19:58:06] -rw------- 1 root root   1526164 Nov 22 19:57 agis_ddmendpoints.agis.ALL.json
[2025-11-22 19:58:06] -rw------- 1 root root   2375242 Nov 22 19:57 log.47533967._000117.job.log.tgz.1
[2025-11-22 19:58:06] -rw------- 1 root root      8618 Nov 22 19:57 heartbeat.json
[2025-11-22 19:58:06] -rw-r--r-- 1 root root      8192 Nov 22 19:57 boinc_mmap_file
[2025-11-22 19:58:06] -rw-r--r-- 1 root root        29 Nov 22 19:57 wrapper_checkpoint.txt
[2025-11-22 19:58:06] -rw------- 1 root root        95 Nov 22 19:58 pilot_heartbeat.json
[2025-11-22 19:58:06] -rw------- 1 root root       823 Nov 22 19:58 pilotlog.txt
[2025-11-22 19:58:06] -rw------- 1 root root  11097343 Nov 22 19:58 log.47533967._000117.job.log.1
[2025-11-22 19:58:06] -rw------- 1 root root       353 Nov 22 19:58 output.list
[2025-11-22 19:58:06] -rw-r--r-- 1 root root       620 Nov 22 19:58 runtime_log
[2025-11-22 19:58:06] -rw------- 1 root root  13496320 Nov 22 19:58 result.tar.gz
[2025-11-22 19:58:06] -rw-r--r-- 1 root root      9019 Nov 22 19:58 runtime_log.err
[2025-11-22 19:58:06] -rw------- 1 root root       664 Nov 22 19:58 2gTLDmK2Tg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeCHKDmR212un.diag
[2025-11-22 19:58:06] -rw-r--r-- 1 root root     21822 Nov 22 19:58 stderr.txt
[2025-11-22 19:58:06] HITS file was successfully produced:
[2025-11-22 19:58:06] -rw------- 1 root root 918068723 Nov 22 19:56 shared/HITS.pool.root.1
[2025-11-22 19:58:06]  *** Contents of shared directory: ***
[2025-11-22 19:58:06] total 1309780
[2025-11-22 19:58:06] -rw-r--r-- 2 root root 409030485 Nov 21 21:51 ATLAS.root_0
[2025-11-22 19:58:06] -rw-r--r-- 2 root root    590104 Nov 21 21:51 input.tar.gz
[2025-11-22 19:58:06] -rw-r--r-- 2 root root     15847 Nov 21 21:51 start_atlas.sh
[2025-11-22 19:58:06] -rw------- 1 root root 918068723 Nov 22 19:56 HITS.pool.root.1
[2025-11-22 19:58:06] -rw------- 1 root root  13496320 Nov 22 19:58 result.tar.gz
19:58:07 (1894794): run_atlas exited; CPU time 136291.181834
19:58:07 (1894794): called boinc_finish(0)

</stderr_txt>
]]>

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