Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
21:51:49 (1894386): wrapper (7.7.26015): starting
21:51:49 (1894386): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 21:51:49] Arguments: --nthreads 8
[2025-11-21 21:51:49] Threads: 8
[2025-11-21 21:51:49] Checking for CVMFS
[2025-11-21 21:51:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:51:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:51:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:51:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:51:52] 2.13.3.0 4524 1549 58224 153161 0 90 1391089 4096000 10362 130560 0 172549783 99.996 563646 849 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-11-21 21:51:52] CVMFS is ok
[2025-11-21 21:51:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 21:51:53] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-21 21:51:53] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-21 21:51:53] Further information can be found at the LHC@home message board.
[2025-11-21 21:51:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:51:53] Checking for apptainer binary...
[2025-11-21 21:51:53] apptainer is not installed, using version from CVMFS
[2025-11-21 21:51:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:51:53] 7950x-linux
[2025-11-21 21:51:53] apptainer works
[2025-11-21 21:51:53] Set ATHENA_PROC_NUMBER=8
[2025-11-21 21:51:53] Set ATHENA_CORE_NUMBER=8
[2025-11-21 21:51:53] Starting ATLAS job with PandaID=6893877282
[2025-11-21 21:51:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc503/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 19:41:41]  *** The last 200 lines of the pilot log: ***
[2025-11-22 19:41:41] 2025-11-23 03:40:34,350 | INFO     | log transfer has been attempted: DONE
[2025-11-22 19:41:41] 2025-11-23 03:40:34,350 | INFO     | job 6893877282 has finished - writing final server update
[2025-11-22 19:41:41] 2025-11-23 03:40:34,350 | INFO     | total number of processed events: 1000 (read)
[2025-11-22 19:41:41] 2025-11-23 03:40:34,350 | INFO     | executing command: lscpu
[2025-11-22 19:41:41] 2025-11-23 03:40:34,379 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-22 19:41:41] 2025-11-23 03:40:34,970 | INFO     | monitor loop #5504: job 0:6893877282 is in state 'finished'
[2025-11-22 19:41:41] 2025-11-23 03:40:34,971 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:41:41] 2025-11-23 03:40:36,023 | INFO     | time since job start (78493s) is within the limit (172800.0s)
[2025-11-22 19:41:41] 2025-11-23 03:40:37,473 | INFO     | monitor loop #5505: job 0:6893877282 is in state 'finished'
[2025-11-22 19:41:41] 2025-11-23 03:40:37,474 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:41:41] 2025-11-23 03:40:38,029 | INFO     | time since job start (78495s) is within the limit (172800.0s)
[2025-11-22 19:41:41] 2025-11-23 03:40:39,402 | INFO     | PID=1932757 has CPU usage=8.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 19:41:41] 2025-11-23 03:40:39,403 | INFO     | .. there are 16 such processes running
[2025-11-22 19:41:41] 2025-11-23 03:40:39,975 | INFO     | monitor loop #5506: job 0:6893877282 is in state 'finished'
[2025-11-22 19:41:41] 2025-11-23 03:40:39,976 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:41:41] 2025-11-23 03:40:40,183 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 19:41:41] 2025-11-23 03:40:40,186 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3999.87134375
[2025-11-22 19:41:41] 2025-11-23 03:40:40,190 | INFO     | using path: /var/lib/multiboinc/boinc503/slots/3/PanDA_Pilot-6893877282/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 19:41:41] 2025-11-23 03:40:40,190 | INFO     | extracted standard info from prmon json
[2025-11-22 19:41:41] 2025-11-23 03:40:40,190 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 19:41:41] 2025-11-23 03:40:40,190 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 19:41:41] 2025-11-23 03:40:40,203 | INFO     | fitting pss+swap vs Time
[2025-11-22 19:41:41] 2025-11-23 03:40:40,204 | INFO     | sum of square deviations: 659479239782.1151
[2025-11-22 19:41:41] 2025-11-23 03:40:40,231 | INFO     | sum of deviations: 9996260630104.975
[2025-11-22 19:41:41] 2025-11-23 03:40:40,231 | INFO     | mean x: 1763829968.5940902
[2025-11-22 19:41:41] 2025-11-23 03:40:40,231 | INFO     | mean y: 3592041.731726283
[2025-11-22 19:41:41] 2025-11-23 03:40:40,231 | INFO     | intersect: -26732206463.588505
[2025-11-22 19:41:41] 2025-11-23 03:40:40,232 | INFO     | chi2: 14.034574147889362
[2025-11-22 19:41:41] 2025-11-23 03:40:40,234 | INFO     | sum of square deviations: 651816928369.5704
[2025-11-22 19:41:41] 2025-11-23 03:40:40,263 | INFO     | sum of deviations: 10415042481486.645
[2025-11-22 19:41:41] 2025-11-23 03:40:40,263 | INFO     | mean x: 1763829816.0944574
[2025-11-22 19:41:41] 2025-11-23 03:40:40,263 | INFO     | mean y: 3600369.1600312255
[2025-11-22 19:41:41] 2025-11-23 03:40:40,263 | INFO     | intersect: -28179715628.304874
[2025-11-22 19:41:41] 2025-11-23 03:40:40,264 | INFO     | chi2: 11.445575970970733
[2025-11-22 19:41:41] 2025-11-23 03:40:40,264 | INFO     | current chi2=11.445575970970733 (change=18.447287032987635 %)
[2025-11-22 19:41:41] 2025-11-23 03:40:40,264 | INFO     | right removable region: 1280
[2025-11-22 19:41:41] 2025-11-23 03:40:40,265 | INFO     | sum of square deviations: 651816854559.5703
[2025-11-22 19:41:41] 2025-11-23 03:40:40,293 | INFO     | sum of deviations: 9477053083752.643
[2025-11-22 19:41:41] 2025-11-23 03:40:40,293 | INFO     | mean x: 1763830121.0944574
[2025-11-22 19:41:41] 2025-11-23 03:40:40,293 | INFO     | mean y: 3602369.3996877437
[2025-11-22 19:41:41] 2025-11-23 03:40:40,293 | INFO     | intersect: -25641502649.59969
[2025-11-22 19:41:41] 2025-11-23 03:40:40,294 | INFO     | chi2: 11.411816133340562
[2025-11-22 19:41:41] 2025-11-23 03:40:40,294 | INFO     | current chi2=11.411816133340562 (change=18.68783467821311 %)
[2025-11-22 19:41:41] 2025-11-23 03:40:40,294 | INFO     | left removable region: 10
[2025-11-22 19:41:41] 2025-11-23 03:40:40,295 | INFO     | sum of square deviations: 635169098637.9718
[2025-11-22 19:41:41] 2025-11-23 03:40:40,325 | INFO     | sum of deviations: 9644659773375.3
[2025-11-22 19:41:41] 2025-11-23 03:40:40,325 | INFO     | mean x: 1763830090.5952756
[2025-11-22 19:41:41] 2025-11-23 03:40:40,325 | INFO     | mean y: 3616300.8157480317
[2025-11-22 19:41:41] 2025-11-23 03:40:40,325 | INFO     | intersect: -26779080083.992577
[2025-11-22 19:41:41] 2025-11-23 03:40:40,326 | INFO     | chi2: 8.457696163578728
[2025-11-22 19:41:41] 2025-11-23 03:40:40,326 | INFO     | current memory leak: 15.18 B/s (using 1270 data points, chi2=8.46)
[2025-11-22 19:41:41] 2025-11-23 03:40:40,327 | INFO     | could have reported an average CPU frequency of 3999 MHz (47 samples)
[2025-11-22 19:41:41] 2025-11-23 03:40:40,327 | INFO     | ..............................
[2025-11-22 19:41:41] 2025-11-23 03:40:40,327 | INFO     | . Timing measurements:
[2025-11-22 19:41:41] 2025-11-23 03:40:40,327 | INFO     | . get job = 0 s
[2025-11-22 19:41:41] 2025-11-23 03:40:40,327 | INFO     | . initial setup = 3 s
[2025-11-22 19:41:41] 2025-11-23 03:40:40,327 | INFO     | . payload setup = 7 s
[2025-11-22 19:41:41] 2025-11-23 03:40:40,327 | INFO     | . stage-in = 0 s
[2025-11-22 19:41:41] 2025-11-23 03:40:40,327 | INFO     | . payload execution = 78453 s
[2025-11-22 19:41:41] 2025-11-23 03:40:40,327 | INFO     | . stage-out = 5 s
[2025-11-22 19:41:41] 2025-11-23 03:40:40,327 | INFO     | . log creation = 0 s
[2025-11-22 19:41:41] 2025-11-23 03:40:40,327 | INFO     | ..............................
[2025-11-22 19:41:41] 2025-11-23 03:40:40,403 | INFO     | time since job start (78497s) is within the limit (172800.0s)
[2025-11-22 19:41:41] 2025-11-23 03:40:40,663 | INFO     | 
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | job summary report
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | --------------------------------------------------
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | PanDA job id: 6893877282
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | task id: 47523449
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | errors: (none)
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | pilot state: finished 
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | transexitcode: 0
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | exeerrorcode: 0
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | exeerrordiag: 
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | exitcode: 0
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | exitmsg: OK
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | cpuconsumptiontime: 133122 s
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | nevents: 1000
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | neventsw: 0
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | pid: 1996362
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | pgrp: 1996362
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | corecount: 8
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | event service: False
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | sizes: {0: 2298598, 1: 2298797, 6: 2299059, 12: 2299087, 78464: 2360237, 78470: 2369287, 78473: 2369471, 78480: 2369717}
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | --------------------------------------------------
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | 
[2025-11-22 19:41:41] 2025-11-23 03:40:40,664 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc503/slots/3
[2025-11-22 19:41:41] 2025-11-23 03:40:40,686 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,686 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,686 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,686 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,686 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,686 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,686 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,686 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,687 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,687 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,687 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,687 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,687 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,687 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,687 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,687 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,687 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,687 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 19:41:41] 2025-11-23 03:40:40,687 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,687 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 19:41:41] 2025-11-23 03:40:40,687 | INFO     | job 6893877282 has completed (purged errors)
[2025-11-22 19:41:41] 2025-11-23 03:40:40,687 | INFO     | overall cleanup function is called
[2025-11-22 19:41:41] 2025-11-23 03:40:41,700 | INFO     | --- collectZombieJob: --- 10, [1996362]
[2025-11-22 19:41:41] 2025-11-23 03:40:41,701 | INFO     | zombie collector waiting for pid 1996362
[2025-11-22 19:41:41] 2025-11-23 03:40:41,701 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 19:41:41] 2025-11-23 03:40:41,701 | INFO     | collected zombie processes
[2025-11-22 19:41:41] 2025-11-23 03:40:41,701 | INFO     | will attempt to kill all subprocesses of pid=1996362
[2025-11-22 19:41:41] 2025-11-23 03:40:42,092 | INFO     | process IDs to be killed: [1996362] (in reverse order)
[2025-11-22 19:41:41] 2025-11-23 03:40:42,293 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 19:41:41] 2025-11-23 03:40:42,293 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 19:41:41] 2025-11-23 03:40:42,301 | INFO     | did not find any defunct processes belonging to 1996362
[2025-11-22 19:41:41] 2025-11-23 03:40:42,306 | INFO     | did not find any defunct processes belonging to 1996362
[2025-11-22 19:41:41] 2025-11-23 03:40:42,306 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 19:41:41] 2025-11-23 03:40:42,306 | INFO     | ready for new job
[2025-11-22 19:41:41] 2025-11-23 03:40:42,307 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 19:41:41] 2025-11-23 03:40:42,310 | INFO     | ***************************************
[2025-11-22 19:41:41] 2025-11-23 03:40:42,310 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 19:41:41] 2025-11-23 03:40:42,310 | INFO     | ***************************************
[2025-11-22 19:41:41] 2025-11-23 03:40:42,310 | INFO     | 
[2025-11-22 19:41:41] 2025-11-23 03:40:42,311 | INFO     | architecture information:
[2025-11-22 19:41:41] 2025-11-23 03:40:42,311 | INFO     | executing command: cat /etc/os-release
[2025-11-22 19:41:41] 2025-11-23 03:40:42,335 | INFO     | cat /etc/os-release:
[2025-11-22 19:41:41] NAME="CentOS Linux"
[2025-11-22 19:41:41] VERSION="7 (Core)"
[2025-11-22 19:41:41] ID="centos"
[2025-11-22 19:41:41] ID_LIKE="rhel fedora"
[2025-11-22 19:41:41] VERSION_ID="7"
[2025-11-22 19:41:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 19:41:41] ANSI_COLOR="0;31"
[2025-11-22 19:41:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 19:41:41] HOME_URL="https://www.centos.org/"
[2025-11-22 19:41:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 19:41:41] 
[2025-11-22 19:41:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 19:41:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 19:41:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 19:41:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 19:41:41] 
[2025-11-22 19:41:41] 2025-11-23 03:40:42,335 | INFO     | ***************************************
[2025-11-22 19:41:41] 2025-11-23 03:40:42,838 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc503/slots/3
[2025-11-22 19:41:41] 2025-11-23 03:40:42,870 | INFO     | sufficient remaining disk space (172351291392 B)
[2025-11-22 19:41:41] 2025-11-23 03:40:42,870 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 19:41:41] 2025-11-23 03:40:42,870 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 19:41:41] 2025-11-23 03:40:42,870 | INFO     | update_server=False
[2025-11-22 19:41:41] 2025-11-23 03:40:42,871 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 19:41:41] 2025-11-23 03:40:42,962 | INFO     | all payload control threads have been joined
[2025-11-22 19:41:41] 2025-11-23 03:40:43,476 | INFO     | all data control threads have been joined
[2025-11-22 19:41:41] 2025-11-23 03:40:43,483 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:41:41] 2025-11-23 03:40:43,484 | INFO     | aborting loop
[2025-11-22 19:41:41] 2025-11-23 03:40:43,874 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 19:41:41] 2025-11-23 03:40:43,875 | INFO     | [job] retrieve thread has finished
[2025-11-22 19:41:41] 2025-11-23 03:40:43,969 | INFO     | [payload] control thread has finished
[2025-11-22 19:41:41] 2025-11-23 03:40:43,992 | INFO     | [payload] failed_post thread has finished
[2025-11-22 19:41:41] 2025-11-23 03:40:44,036 | INFO     | all job control threads have been joined
[2025-11-22 19:41:41] 2025-11-23 03:40:44,481 | INFO     | [data] control thread has finished
[2025-11-22 19:41:41] 2025-11-23 03:40:44,491 | INFO     | [job] job monitor thread has finished
[2025-11-22 19:41:41] 2025-11-23 03:40:44,550 | INFO     | [job] validate thread has finished
[2025-11-22 19:41:41] 2025-11-23 03:40:44,735 | INFO     | [data] copytool_in thread has finished
[2025-11-22 19:41:41] 2025-11-23 03:40:44,737 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 19:41:41] 2025-11-23 03:40:44,864 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 19:41:41] 2025-11-23 03:40:45,034 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 19:41:41] 2025-11-23 03:40:45,041 | INFO     | [job] control thread has finished
[2025-11-22 19:41:41] 2025-11-23 03:40:45,281 | INFO     | [payload] validate_post thread has finished
[2025-11-22 19:41:41] 2025-11-23 03:40:45,371 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 19:41:41] 2025-11-23 03:40:45,407 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:41:41] 2025-11-23 03:40:45,879 | INFO     | [data] copytool_out thread has finished
[2025-11-22 19:41:41] 2025-11-23 03:40:46,412 | INFO     | [job] queue monitor thread has finished
[2025-11-22 19:41:41] 2025-11-23 03:40:48,869 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 19:41:41] 2025-11-23 03:40:53,323 | INFO     | job.realtimelogging is not enabled
[2025-11-22 19:41:41] 2025-11-23 03:40:54,328 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 19:41:41] 2025-11-23 03:41:13,780 | INFO     | PID=1932757 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 19:41:41] 2025-11-23 03:41:13,780 | INFO     | .. there are 16 such processes running
[2025-11-22 19:41:41] 2025-11-23 03:41:13,780 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 19:41:41] 2025-11-23 03:41:13,780 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 19:41:41] 2025-11-23 03:41:13,781 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 19:41:41] 2025-11-23 03:41:34,261 | INFO     | [monitor] cgroup control has ended
[2025-11-22 19:41:41] 2025-11-23 03:41:35,725 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 134310918080320)>', '<ExcThread(monitor, started 134310564701952)>']
[2025-11-22 19:41:41] 2025-11-23 03:41:35,892 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 19:41:41] 2025-11-23 03:41:35,893 | INFO     | [monitor] control thread has ended
[2025-11-22 19:41:41] 2025-11-23 03:41:40,750 | INFO     | all workflow threads have been joined
[2025-11-22 19:41:41] 2025-11-23 03:41:40,751 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 19:41:41] 2025-11-23 03:41:40,751 | INFO     | traces error code: 0
[2025-11-22 19:41:41] 2025-11-23 03:41:40,751 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 19:41:41] 2025-11-23 03:41:40,882 [wrapper] ==== pilot stdout END ====
[2025-11-22 19:41:41] 2025-11-23 03:41:40,884 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 19:41:41] 2025-11-23 03:41:40,886 [wrapper] pilotpid: 1932757
[2025-11-22 19:41:41] 2025-11-23 03:41:40,891 [wrapper] Pilot exit status: 0
[2025-11-22 19:41:41] 2025-11-23 03:41:40,907 [wrapper] pandaids: 6893877282
[2025-11-22 19:41:41] 2025-11-23 03:41:41,007 [wrapper] cleanup supervisor_pilot 4049635 1932759
[2025-11-22 19:41:41] 2025-11-23 03:41:41,010 [wrapper] Test setup, not cleaning
[2025-11-22 19:41:41] 2025-11-23 03:41:41,012 [wrapper] apfmon messages muted
[2025-11-22 19:41:41] 2025-11-23 03:41:41,022 [wrapper] ==== wrapper stdout END ====
[2025-11-22 19:41:41] 2025-11-23 03:41:41,024 [wrapper] ==== wrapper stderr END ====
[2025-11-22 19:41:41]  *** Error codes and diagnostics ***
[2025-11-22 19:41:41]     "exeErrorCode": 0,
[2025-11-22 19:41:41]     "exeErrorDiag": "",
[2025-11-22 19:41:41]     "pilotErrorCode": 0,
[2025-11-22 19:41:41]     "pilotErrorDiag": "",
[2025-11-22 19:41:41]  *** Listing of results directory ***
[2025-11-22 19:41:41] total 1315780
[2025-11-22 19:41:41] -rw-r--r-- 1 root root    576529 Nov 20 10:04 pilot3.tar.gz
[2025-11-22 19:41:41] -rwx------ 1 4871 1028     36292 Nov 20 10:35 runpilot2-wrapper.sh
[2025-11-22 19:41:41] -rw-r--r-- 1 root root      5112 Nov 20 10:35 queuedata.json
[2025-11-22 19:41:41] -rw-r--r-- 1 root root       100 Nov 21 21:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 19:41:41] -rwxr-xr-x 1 root root      7986 Nov 21 21:51 run_atlas
[2025-11-22 19:41:41] -rw-r--r-- 1 root root       105 Nov 21 21:51 job.xml
[2025-11-22 19:41:41] -rw-r--r-- 1 root root      7071 Nov 21 21:51 init_data.xml
[2025-11-22 19:41:41] -rw-r--r-- 2 root root 406630412 Nov 21 21:51 EVNT.47493127._000797.pool.root.1
[2025-11-22 19:41:41] -rw-r--r-- 2 root root    590101 Nov 21 21:51 input.tar.gz
[2025-11-22 19:41:41] -rw-r--r-- 2 root root     15847 Nov 21 21:51 start_atlas.sh
[2025-11-22 19:41:41] drwxrwx--x 2 root root      4096 Nov 21 21:51 shared
[2025-11-22 19:41:41] -rw-r--r-- 1 root root         0 Nov 21 21:51 boinc_lockfile
[2025-11-22 19:41:41] -rw-r--r-- 1 root root      2784 Nov 21 21:51 pandaJob.out
[2025-11-22 19:41:41] -rw------- 1 root root    989752 Nov 21 21:52 agis_schedconf.cvmfs.json
[2025-11-22 19:41:41] drwxr-xr-x 5  320  320      4096 Nov 21 21:52 pilot3
[2025-11-22 19:41:41] -rw-r--r-- 1 root root       533 Nov 22 19:30 boinc_task_state.xml
[2025-11-22 19:41:41] -rw------- 1 root root 910176166 Nov 22 19:40 HITS.47523449._007965.pool.root.1
[2025-11-22 19:41:41] -rw------- 1 root root        95 Nov 22 19:40 pilot_heartbeat.json
[2025-11-22 19:41:41] -rw------- 1 root root      1066 Nov 22 19:40 memory_monitor_summary.json
[2025-11-22 19:41:41] -rw------- 1 root root   1526164 Nov 22 19:40 agis_ddmendpoints.agis.ALL.json
[2025-11-22 19:41:41] -rw------- 1 root root   2364487 Nov 22 19:40 log.47523449._007965.job.log.tgz.1
[2025-11-22 19:41:41] -rw------- 1 root root      8632 Nov 22 19:40 heartbeat.json
[2025-11-22 19:41:41] -rw-r--r-- 1 root root        29 Nov 22 19:41 wrapper_checkpoint.txt
[2025-11-22 19:41:41] -rw-r--r-- 1 root root      8192 Nov 22 19:41 boinc_mmap_file
[2025-11-22 19:41:41] -rw------- 1 root root      4911 Nov 22 19:41 pilotlog.txt
[2025-11-22 19:41:41] -rw------- 1 root root  10950362 Nov 22 19:41 log.47523449._007965.job.log.1
[2025-11-22 19:41:41] -rw------- 1 root root       353 Nov 22 19:41 output.list
[2025-11-22 19:41:41] -rw-r--r-- 1 root root       620 Nov 22 19:41 runtime_log
[2025-11-22 19:41:41] -rw------- 1 root root  13332480 Nov 22 19:41 result.tar.gz
[2025-11-22 19:41:41] -rw------- 1 root root       664 Nov 22 19:41 zuVNDmTgOg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHPIKDmrVwK2m.diag
[2025-11-22 19:41:41] -rw-r--r-- 1 root root      9019 Nov 22 19:41 runtime_log.err
[2025-11-22 19:41:41] -rw-r--r-- 1 root root     21941 Nov 22 19:41 stderr.txt
[2025-11-22 19:41:41] HITS file was successfully produced:
[2025-11-22 19:41:41] -rw------- 1 root root 910176166 Nov 22 19:40 shared/HITS.pool.root.1
[2025-11-22 19:41:41]  *** Contents of shared directory: ***
[2025-11-22 19:41:41] total 1299572
[2025-11-22 19:41:41] -rw-r--r-- 2 root root 406630412 Nov 21 21:51 ATLAS.root_0
[2025-11-22 19:41:41] -rw-r--r-- 2 root root    590101 Nov 21 21:51 input.tar.gz
[2025-11-22 19:41:41] -rw-r--r-- 2 root root     15847 Nov 21 21:51 start_atlas.sh
[2025-11-22 19:41:41] -rw------- 1 root root 910176166 Nov 22 19:40 HITS.pool.root.1
[2025-11-22 19:41:41] -rw------- 1 root root  13332480 Nov 22 19:41 result.tar.gz
19:41:42 (1894386): run_atlas exited; CPU time 133753.618472
19:41:42 (1894386): called boinc_finish(0)

</stderr_txt>
]]>

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