Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:14:31 (2314009): wrapper (7.7.26015): starting
00:14:31 (2314009): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 00:14:31] Arguments: --nthreads 9
[2025-11-21 00:14:31] Threads: 9
[2025-11-21 00:14:31] Checking for CVMFS
[2025-11-21 00:14:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:14:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:14:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:14:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:14:33] 2.13.2.0 9698 26209 256492 153109 2 57 38555860 40960000 10479 16776704 0 22062986 99.581 19843557 27015 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 00:14:33] CVMFS is ok
[2025-11-21 00:14:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:14:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:14:33] Further information can be found at the LHC@home message board.
[2025-11-21 00:14:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:14:33] Checking for apptainer binary...
[2025-11-21 00:14:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:14:33] Running /usr/bin/apptainer --version
[2025-11-21 00:14:33] apptainer version 1.4.4-1.el9
[2025-11-21 00:14:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:14:34] c-210-8.aglt2.org
[2025-11-21 00:14:34] apptainer works
[2025-11-21 00:14:34] Set ATHENA_PROC_NUMBER=9
[2025-11-21 00:14:34] Set ATHENA_CORE_NUMBER=9
[2025-11-21 00:14:34] Starting ATLAS job with PandaID=6894236478
[2025-11-21 00:14:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 05:27:56]  *** The last 200 lines of the pilot log: ***
[2025-11-22 05:27:56] 2025-11-22 10:27:06,912 | INFO     | total number of processed events: 1000 (read)
[2025-11-22 05:27:56] 2025-11-22 10:27:06,913 | INFO     | executing command: lscpu
[2025-11-22 05:27:56] 2025-11-22 10:27:06,980 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-22 05:27:56] 2025-11-22 10:27:07,884 | INFO     | monitor loop #6428: job 0:6894236478 is in state 'finished'
[2025-11-22 05:27:56] 2025-11-22 10:27:07,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 05:27:56] 2025-11-22 10:27:07,994 | INFO     | time since job start (105101s) is within the limit (172800.0s)
[2025-11-22 05:27:56] 2025-11-22 10:27:10,452 | INFO     | monitor loop #6429: job 0:6894236478 is in state 'finished'
[2025-11-22 05:27:56] 2025-11-22 10:27:10,452 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 05:27:56] 2025-11-22 10:27:12,868 | INFO     | PID=2318195 has CPU usage=15.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-22 05:27:56] 2025-11-22 10:27:12,868 | INFO     | .. there are 18 such processes running
[2025-11-22 05:27:56] 2025-11-22 10:27:12,981 | INFO     | monitor loop #6430: job 0:6894236478 is in state 'finished'
[2025-11-22 05:27:56] 2025-11-22 10:27:12,981 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 05:27:56] 2025-11-22 10:27:13,922 | INFO     | time since job start (105107s) is within the limit (172800.0s)
[2025-11-22 05:27:56] 2025-11-22 10:27:14,993 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 05:27:56] 2025-11-22 10:27:15,002 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2638.957062499999
[2025-11-22 05:27:56] 2025-11-22 10:27:15,011 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6894236478/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 05:27:56] 2025-11-22 10:27:15,012 | INFO     | extracted standard info from prmon json
[2025-11-22 05:27:56] 2025-11-22 10:27:15,012 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 05:27:56] 2025-11-22 10:27:15,012 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 05:27:56] 2025-11-22 10:27:15,141 | INFO     | fitting pss+swap vs Time
[2025-11-22 05:27:56] 2025-11-22 10:27:15,144 | INFO     | sum of square deviations: 1583584976156.3704
[2025-11-22 05:27:56] 2025-11-22 10:27:15,512 | INFO     | sum of deviations: 6279651855239.707
[2025-11-22 05:27:56] 2025-11-22 10:27:15,512 | INFO     | mean x: 1763754727.7770035
[2025-11-22 05:27:56] 2025-11-22 10:27:15,512 | INFO     | mean y: 3135576.270034843
[2025-11-22 05:27:56] 2025-11-22 10:27:15,513 | INFO     | intersect: -6990973243.425532
[2025-11-22 05:27:56] 2025-11-22 10:27:15,559 | INFO     | monitor loop #6431: job 0:6894236478 is in state 'finished'
[2025-11-22 05:27:56] 2025-11-22 10:27:15,559 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 05:27:56] 2025-11-22 10:27:15,559 | INFO     | chi2: 23.636438924784493
[2025-11-22 05:27:56] 2025-11-22 10:27:15,578 | INFO     | sum of square deviations: 1569834430065.0176
[2025-11-22 05:27:56] 2025-11-22 10:27:15,950 | INFO     | time since job start (105109s) is within the limit (172800.0s)
[2025-11-22 05:27:56] 2025-11-22 10:27:16,305 | INFO     | sum of deviations: 6939647080902.911
[2025-11-22 05:27:56] 2025-11-22 10:27:16,334 | INFO     | mean x: 1763754575.2865462
[2025-11-22 05:27:56] 2025-11-22 10:27:16,334 | INFO     | mean y: 3142895.061153174
[2025-11-22 05:27:56] 2025-11-22 10:27:16,334 | INFO     | intersect: -7793752150.30328
[2025-11-22 05:27:56] 2025-11-22 10:27:16,337 | INFO     | chi2: 20.084355931128247
[2025-11-22 05:27:56] 2025-11-22 10:27:16,337 | INFO     | current chi2=20.084355931128247 (change=15.027995566335642 %)
[2025-11-22 05:27:56] 2025-11-22 10:27:16,337 | INFO     | right removable region: 1716
[2025-11-22 05:27:56] 2025-11-22 10:27:16,356 | INFO     | sum of square deviations: 1569830987835.0186
[2025-11-22 05:27:56] 2025-11-22 10:27:16,762 | INFO     | sum of deviations: 5523668341104.945
[2025-11-22 05:27:56] 2025-11-22 10:27:16,762 | INFO     | mean x: 1763754880.2865462
[2025-11-22 05:27:56] 2025-11-22 10:27:16,762 | INFO     | mean y: 3143958.028538148
[2025-11-22 05:27:56] 2025-11-22 10:27:16,762 | INFO     | intersect: -6202872529.863607
[2025-11-22 05:27:56] 2025-11-22 10:27:16,765 | INFO     | chi2: 19.488342625734905
[2025-11-22 05:27:56] 2025-11-22 10:27:16,765 | INFO     | current chi2=19.488342625734905 (change=17.54958228796476 %)
[2025-11-22 05:27:56] 2025-11-22 10:27:16,765 | INFO     | left removable region: 10
[2025-11-22 05:27:56] 2025-11-22 10:27:16,790 | INFO     | sum of square deviations: 1539857130862.938
[2025-11-22 05:27:56] 2025-11-22 10:27:17,251 | INFO     | sum of deviations: 5684168174989.127
[2025-11-22 05:27:56] 2025-11-22 10:27:17,251 | INFO     | mean x: 1763754849.8077374
[2025-11-22 05:27:56] 2025-11-22 10:27:17,251 | INFO     | mean y: 3160289.0216881596
[2025-11-22 05:27:56] 2025-11-22 10:27:17,251 | INFO     | intersect: -6507495137.914949
[2025-11-22 05:27:56] 2025-11-22 10:27:17,270 | INFO     | chi2: 12.022505106342543
[2025-11-22 05:27:56] 2025-11-22 10:27:17,270 | INFO     | current memory leak: 3.69 B/s (using 1706 data points, chi2=12.02)
[2025-11-22 05:27:56] 2025-11-22 10:27:17,272 | INFO     | could have reported an average CPU frequency of 2620 MHz (61 samples)
[2025-11-22 05:27:56] 2025-11-22 10:27:17,272 | INFO     | ..............................
[2025-11-22 05:27:56] 2025-11-22 10:27:17,272 | INFO     | . Timing measurements:
[2025-11-22 05:27:56] 2025-11-22 10:27:17,272 | INFO     | . get job = 0 s
[2025-11-22 05:27:56] 2025-11-22 10:27:17,272 | INFO     | . initial setup = 4 s
[2025-11-22 05:27:56] 2025-11-22 10:27:17,272 | INFO     | . payload setup = 33 s
[2025-11-22 05:27:56] 2025-11-22 10:27:17,289 | INFO     | . stage-in = 0 s
[2025-11-22 05:27:56] 2025-11-22 10:27:17,289 | INFO     | . payload execution = 105009 s
[2025-11-22 05:27:56] 2025-11-22 10:27:17,289 | INFO     | . stage-out = 4 s
[2025-11-22 05:27:56] 2025-11-22 10:27:17,289 | INFO     | . log creation = 1 s
[2025-11-22 05:27:56] 2025-11-22 10:27:17,289 | INFO     | ..............................
[2025-11-22 05:27:56] 2025-11-22 10:27:17,971 | INFO     | time since job start (105111s) is within the limit (172800.0s)
[2025-11-22 05:27:56] 2025-11-22 10:27:17,974 | INFO     | 
[2025-11-22 05:27:56] 2025-11-22 10:27:17,974 | INFO     | job summary report
[2025-11-22 05:27:56] 2025-11-22 10:27:17,974 | INFO     | --------------------------------------------------
[2025-11-22 05:27:56] 2025-11-22 10:27:17,974 | INFO     | PanDA job id: 6894236478
[2025-11-22 05:27:56] 2025-11-22 10:27:17,974 | INFO     | task id: 47533967
[2025-11-22 05:27:56] 2025-11-22 10:27:17,974 | INFO     | errors: (none)
[2025-11-22 05:27:56] 2025-11-22 10:27:17,974 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 05:27:56] 2025-11-22 10:27:17,975 | INFO     | pilot state: finished 
[2025-11-22 05:27:56] 2025-11-22 10:27:17,975 | INFO     | transexitcode: 0
[2025-11-22 05:27:56] 2025-11-22 10:27:17,975 | INFO     | exeerrorcode: 0
[2025-11-22 05:27:56] 2025-11-22 10:27:17,975 | INFO     | exeerrordiag: 
[2025-11-22 05:27:56] 2025-11-22 10:27:17,976 | INFO     | exitcode: 0
[2025-11-22 05:27:56] 2025-11-22 10:27:17,976 | INFO     | exitmsg: OK
[2025-11-22 05:27:56] 2025-11-22 10:27:17,976 | INFO     | cpuconsumptiontime: 330389 s
[2025-11-22 05:27:56] 2025-11-22 10:27:17,976 | INFO     | nevents: 1000
[2025-11-22 05:27:56] 2025-11-22 10:27:17,976 | INFO     | neventsw: 0
[2025-11-22 05:27:56] 2025-11-22 10:27:17,976 | INFO     | pid: 2326268
[2025-11-22 05:27:56] 2025-11-22 10:27:17,976 | INFO     | pgrp: 2326268
[2025-11-22 05:27:56] 2025-11-22 10:27:17,976 | INFO     | corecount: 9
[2025-11-22 05:27:56] 2025-11-22 10:27:17,977 | INFO     | event service: False
[2025-11-22 05:27:56] 2025-11-22 10:27:17,977 | INFO     | sizes: {0: 2297975, 1: 2298660, 2: 2298859, 3: 2298887, 14: 2298887, 20: 2299177, 25: 2299333, 105045: 2372953, 105046: 2372952, 105053: 2382002, 105054: 2382058, 
[2025-11-22 05:27:56] 2025-11-22 10:27:17,977 | INFO     | --------------------------------------------------
[2025-11-22 05:27:56] 2025-11-22 10:27:17,977 | INFO     | 
[2025-11-22 05:27:56] 2025-11-22 10:27:17,977 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-22 05:27:56] 2025-11-22 10:27:18,032 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,033 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,033 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,033 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,033 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,033 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,034 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,034 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,034 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,034 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,034 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,034 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,034 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,035 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,035 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,035 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,035 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,035 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 05:27:56] 2025-11-22 10:27:18,035 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,035 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 05:27:56] 2025-11-22 10:27:18,036 | INFO     | job 6894236478 has completed (purged errors)
[2025-11-22 05:27:56] 2025-11-22 10:27:18,036 | INFO     | overall cleanup function is called
[2025-11-22 05:27:56] 2025-11-22 10:27:19,056 | INFO     | --- collectZombieJob: --- 10, [2326268]
[2025-11-22 05:27:56] 2025-11-22 10:27:19,056 | INFO     | zombie collector waiting for pid 2326268
[2025-11-22 05:27:56] 2025-11-22 10:27:19,064 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 05:27:56] 2025-11-22 10:27:19,064 | INFO     | collected zombie processes
[2025-11-22 05:27:56] 2025-11-22 10:27:19,064 | INFO     | will attempt to kill all subprocesses of pid=2326268
[2025-11-22 05:27:56] 2025-11-22 10:27:19,919 | INFO     | process IDs to be killed: [2326268] (in reverse order)
[2025-11-22 05:27:56] 2025-11-22 10:27:20,130 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 05:27:56] 2025-11-22 10:27:20,138 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 05:27:56] 2025-11-22 10:27:20,207 | INFO     | did not find any defunct processes belonging to 2326268
[2025-11-22 05:27:56] 2025-11-22 10:27:20,220 | INFO     | did not find any defunct processes belonging to 2326268
[2025-11-22 05:27:56] 2025-11-22 10:27:20,231 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 05:27:56] 2025-11-22 10:27:20,231 | INFO     | ready for new job
[2025-11-22 05:27:56] 2025-11-22 10:27:20,231 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 05:27:56] 2025-11-22 10:27:20,266 | INFO     | ***************************************
[2025-11-22 05:27:56] 2025-11-22 10:27:20,266 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 05:27:56] 2025-11-22 10:27:20,266 | INFO     | ***************************************
[2025-11-22 05:27:56] 2025-11-22 10:27:20,267 | INFO     | 
[2025-11-22 05:27:56] 2025-11-22 10:27:20,270 | INFO     | architecture information:
[2025-11-22 05:27:56] 2025-11-22 10:27:20,270 | INFO     | executing command: cat /etc/os-release
[2025-11-22 05:27:56] 2025-11-22 10:27:20,289 | INFO     | cat /etc/os-release:
[2025-11-22 05:27:56] NAME="CentOS Linux"
[2025-11-22 05:27:56] VERSION="7 (Core)"
[2025-11-22 05:27:56] ID="centos"
[2025-11-22 05:27:56] ID_LIKE="rhel fedora"
[2025-11-22 05:27:56] VERSION_ID="7"
[2025-11-22 05:27:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 05:27:56] ANSI_COLOR="0;31"
[2025-11-22 05:27:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 05:27:56] HOME_URL="https://www.centos.org/"
[2025-11-22 05:27:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 05:27:56] 
[2025-11-22 05:27:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 05:27:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 05:27:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 05:27:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 05:27:56] 
[2025-11-22 05:27:56] 2025-11-22 10:27:20,289 | INFO     | ***************************************
[2025-11-22 05:27:56] 2025-11-22 10:27:20,797 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-22 05:27:56] 2025-11-22 10:27:20,867 | INFO     | sufficient remaining disk space (57434701824 B)
[2025-11-22 05:27:56] 2025-11-22 10:27:20,867 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 05:27:56] 2025-11-22 10:27:20,868 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 05:27:56] 2025-11-22 10:27:20,868 | INFO     | update_server=False
[2025-11-22 05:27:56] 2025-11-22 10:27:20,868 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 05:27:56] 2025-11-22 10:27:20,924 | INFO     | all payload control threads have been joined
[2025-11-22 05:27:56] 2025-11-22 10:27:21,564 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 05:27:56] 2025-11-22 10:27:21,681 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:27:56] 2025-11-22 10:27:21,681 | INFO     | aborting loop
[2025-11-22 05:27:56] 2025-11-22 10:27:21,764 | INFO     | all job control threads have been joined
[2025-11-22 05:27:56] 2025-11-22 10:27:21,876 | INFO     | [job] retrieve thread has finished
[2025-11-22 05:27:56] 2025-11-22 10:27:21,953 | INFO     | [payload] control thread has finished
[2025-11-22 05:27:56] 2025-11-22 10:27:21,953 | INFO     | all data control threads have been joined
[2025-11-22 05:27:56] 2025-11-22 10:27:22,063 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 05:27:56] 2025-11-22 10:27:22,065 | INFO     | [payload] validate_post thread has finished
[2025-11-22 05:27:56] 2025-11-22 10:27:22,319 | INFO     | [job] validate thread has finished
[2025-11-22 05:27:56] 2025-11-22 10:27:22,703 | INFO     | [data] copytool_in thread has finished
[2025-11-22 05:27:56] 2025-11-22 10:27:22,703 | INFO     | [job] job monitor thread has finished
[2025-11-22 05:27:56] 2025-11-22 10:27:22,772 | INFO     | [job] control thread has finished
[2025-11-22 05:27:56] 2025-11-22 10:27:22,867 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 05:27:56] 2025-11-22 10:27:22,871 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 05:27:56] 2025-11-22 10:27:22,974 | INFO     | [data] control thread has finished
[2025-11-22 05:27:56] 2025-11-22 10:27:23,007 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:27:56] 2025-11-22 10:27:23,071 | INFO     | [payload] failed_post thread has finished
[2025-11-22 05:27:56] 2025-11-22 10:27:23,109 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 05:27:56] 2025-11-22 10:27:23,349 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 05:27:56] 2025-11-22 10:27:23,571 | INFO     | [data] copytool_out thread has finished
[2025-11-22 05:27:56] 2025-11-22 10:27:24,022 | INFO     | [job] queue monitor thread has finished
[2025-11-22 05:27:56] 2025-11-22 10:27:26,082 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 05:27:56] 2025-11-22 10:27:37,593 | INFO     | [monitor] cgroup control has ended
[2025-11-22 05:27:56] 2025-11-22 10:27:37,627 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140658046764864)>', '<ExcThread(monitor, started 140657402300160)>']
[2025-11-22 05:27:56] 2025-11-22 10:27:42,653 | INFO     | all workflow threads have been joined
[2025-11-22 05:27:56] 2025-11-22 10:27:42,653 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 05:27:56] 2025-11-22 10:27:42,653 | INFO     | traces error code: 0
[2025-11-22 05:27:56] 2025-11-22 10:27:42,654 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 05:27:56] 2025-11-22 10:27:54,390 | INFO     | PID=2318195 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 05:27:56] 2025-11-22 10:27:54,391 | INFO     | .. there are 18 such processes running
[2025-11-22 05:27:56] 2025-11-22 10:27:54,399 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 05:27:56] 2025-11-22 10:27:54,399 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 05:27:56] 2025-11-22 10:27:54,399 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 05:27:56] 2025-11-22 10:27:54,400 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 05:27:56] 2025-11-22 10:27:54,400 | INFO     | [monitor] control thread has ended
[2025-11-22 05:27:56] 2025-11-22 10:27:55,672 [wrapper] ==== pilot stdout END ====
[2025-11-22 05:27:56] 2025-11-22 10:27:55,718 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 05:27:56] 2025-11-22 10:27:55,768 [wrapper] pilotpid: 2318195
[2025-11-22 05:27:56] 2025-11-22 10:27:55,772 [wrapper] Pilot exit status: 0
[2025-11-22 05:27:56] 2025-11-22 10:27:55,791 [wrapper] pandaids: 6894236478
[2025-11-22 05:27:56] 2025-11-22 10:27:55,899 [wrapper] cleanup supervisor_pilot 1136192 2318196
[2025-11-22 05:27:56] 2025-11-22 10:27:55,951 [wrapper] Test setup, not cleaning
[2025-11-22 05:27:56] 2025-11-22 10:27:55,968 [wrapper] apfmon messages muted
[2025-11-22 05:27:56] 2025-11-22 10:27:55,999 [wrapper] ==== wrapper stdout END ====
[2025-11-22 05:27:56] 2025-11-22 10:27:56,003 [wrapper] ==== wrapper stderr END ====
[2025-11-22 05:27:56]  *** Error codes and diagnostics ***
[2025-11-22 05:27:56]     "exeErrorCode": 0,
[2025-11-22 05:27:56]     "exeErrorDiag": "",
[2025-11-22 05:27:56]     "pilotErrorCode": 0,
[2025-11-22 05:27:56]     "pilotErrorDiag": "",
[2025-11-22 05:27:56]  *** Listing of results directory ***
[2025-11-22 05:27:56] total 1337252
[2025-11-22 05:27:56] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 19:06 pilot3.tar.gz
[2025-11-22 05:27:56] -rwx------. 1 boincer umatlas     36292 Nov 20 19:13 runpilot2-wrapper.sh
[2025-11-22 05:27:56] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 19:13 queuedata.json
[2025-11-22 05:27:56] -rw-r--r--. 1 boincer umatlas       100 Nov 21 00:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 05:27:56] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 00:14 run_atlas
[2025-11-22 05:27:56] -rw-r--r--. 1 boincer umatlas       105 Nov 21 00:14 job.xml
[2025-11-22 05:27:56] -rw-r--r--. 2 boincer umatlas 409261689 Nov 21 00:14 EVNT.47493127._002031.pool.root.1
[2025-11-22 05:27:56] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:14 start_atlas.sh
[2025-11-22 05:27:56] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 00:14 shared
[2025-11-22 05:27:56] -rw-r--r--. 2 boincer umatlas    590098 Nov 21 00:14 input.tar.gz
[2025-11-22 05:27:56] -rw-r--r--. 1 boincer umatlas         0 Nov 21 00:14 boinc_lockfile
[2025-11-22 05:27:56] -rw-r--r--. 1 boincer umatlas      2784 Nov 21 00:14 pandaJob.out
[2025-11-22 05:27:56] -rw-------. 1 boincer umatlas        57 Nov 21 00:14 setup.sh.local
[2025-11-22 05:27:56] -rw-------. 1 boincer umatlas    989817 Nov 21 00:15 agis_schedconf.cvmfs.json
[2025-11-22 05:27:56] drwx------. 5 boincer umatlas      4096 Nov 21 00:15 pilot3
[2025-11-22 05:27:56] -rw-r--r--. 1 boincer umatlas       533 Nov 22 04:51 boinc_task_state.xml
[2025-11-22 05:27:56] -rw-r--r--. 1 boincer umatlas      6613 Nov 22 05:19 init_data.xml
[2025-11-22 05:27:56] -rw-------. 1 boincer umatlas 923735381 Nov 22 05:26 HITS.47533967._000027.pool.root.1
[2025-11-22 05:27:56] -rw-------. 1 boincer umatlas      1060 Nov 22 05:26 memory_monitor_summary.json
[2025-11-22 05:27:56] -rw-------. 1 boincer umatlas   1526164 Nov 22 05:27 agis_ddmendpoints.agis.ALL.json
[2025-11-22 05:27:56] -rw-------. 1 boincer umatlas   2794458 Nov 22 05:27 log.47533967._000027.job.log.tgz.1
[2025-11-22 05:27:56] -rw-------. 1 boincer umatlas      8619 Nov 22 05:27 heartbeat.json
[2025-11-22 05:27:56] -rw-------. 1 boincer umatlas        95 Nov 22 05:27 pilot_heartbeat.json
[2025-11-22 05:27:56] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 05:27 boinc_mmap_file
[2025-11-22 05:27:56] -rw-r--r--. 1 boincer umatlas        29 Nov 22 05:27 wrapper_checkpoint.txt
[2025-11-22 05:27:56] -rw-------. 1 boincer umatlas       823 Nov 22 05:27 pilotlog.txt
[2025-11-22 05:27:56] -rw-------. 1 boincer umatlas  13418021 Nov 22 05:27 log.47533967._000027.job.log.1
[2025-11-22 05:27:56] -rw-------. 1 boincer umatlas       353 Nov 22 05:27 output.list
[2025-11-22 05:27:56] -rw-r--r--. 1 boincer umatlas       620 Nov 22 05:27 runtime_log
[2025-11-22 05:27:56] -rw-------. 1 boincer umatlas  16230400 Nov 22 05:27 result.tar.gz
[2025-11-22 05:27:56] -rw-r--r--. 1 boincer umatlas      9339 Nov 22 05:27 runtime_log.err
[2025-11-22 05:27:56] -rw-------. 1 boincer umatlas       662 Nov 22 05:27 mSgLDmNxTg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4BHKDmuL775m.diag
[2025-11-22 05:27:56] -rw-r--r--. 1 boincer umatlas     21931 Nov 22 05:27 stderr.txt
[2025-11-22 05:27:56] HITS file was successfully produced:
[2025-11-22 05:27:56] -rw-------. 1 boincer umatlas 923735381 Nov 22 05:26 shared/HITS.pool.root.1
[2025-11-22 05:27:56]  *** Contents of shared directory: ***
[2025-11-22 05:27:56] total 1318216
[2025-11-22 05:27:56] -rw-r--r--. 2 boincer umatlas 409261689 Nov 21 00:14 ATLAS.root_0
[2025-11-22 05:27:56] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:14 start_atlas.sh
[2025-11-22 05:27:56] -rw-r--r--. 2 boincer umatlas    590098 Nov 21 00:14 input.tar.gz
[2025-11-22 05:27:56] -rw-------. 1 boincer umatlas 923735381 Nov 22 05:26 HITS.pool.root.1
[2025-11-22 05:27:56] -rw-------. 1 boincer umatlas  16230400 Nov 22 05:27 result.tar.gz
05:27:57 (2314009): run_atlas exited; CPU time 333081.863895
05:27:57 (2314009): called boinc_finish(0)

</stderr_txt>
]]>

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