Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:11:51 (3862658): wrapper (7.7.26015): starting
00:11:51 (3862658): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 00:11:51] Arguments: --nthreads 8
[2025-11-21 00:11:51] Threads: 8
[2025-11-21 00:11:51] Checking for CVMFS
[2025-11-21 00:11:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:11:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:11:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:11:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:11:53] 2.13.2.0 7533 23924 240384 153108 1 98 35608773 39288832 7330 16776704 0 12662255 99.630 13398725 32924 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 00:11:53] CVMFS is ok
[2025-11-21 00:11:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:11:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:11:53] Further information can be found at the LHC@home message board.
[2025-11-21 00:11:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:11:53] Checking for apptainer binary...
[2025-11-21 00:11:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:11:54] Running /usr/bin/apptainer --version
[2025-11-21 00:11:54] apptainer version 1.4.4-1.el9
[2025-11-21 00:11:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:11:54] c-211-31.aglt2.org
[2025-11-21 00:11:54] apptainer works
[2025-11-21 00:11:54] Set ATHENA_PROC_NUMBER=8
[2025-11-21 00:11:54] Set ATHENA_CORE_NUMBER=8
[2025-11-21 00:11:54] Starting ATLAS job with PandaID=6893877156
[2025-11-21 00:11:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 00:42:49]  *** The last 200 lines of the pilot log: ***
[2025-11-22 00:42:49] 2025-11-22 05:42:11,821 | INFO     | monitor loop #5802: job 0:6893877156 is in state 'finished'
[2025-11-22 00:42:49] 2025-11-22 05:42:11,821 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 00:42:49] 2025-11-22 05:42:12,802 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 00:42:49] 2025-11-22 05:42:12,813 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2899.9881
[2025-11-22 00:42:49] 2025-11-22 05:42:12,847 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6893877156/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 00:42:49] 2025-11-22 05:42:12,848 | INFO     | extracted standard info from prmon json
[2025-11-22 00:42:49] 2025-11-22 05:42:12,848 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 00:42:49] 2025-11-22 05:42:12,848 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 00:42:49] 2025-11-22 05:42:12,899 | INFO     | fitting pss+swap vs Time
[2025-11-22 00:42:49] 2025-11-22 05:42:12,901 | INFO     | sum of square deviations: 931690613296.742
[2025-11-22 00:42:49] 2025-11-22 05:42:12,958 | INFO     | sum of deviations: 5216000988141.845
[2025-11-22 00:42:49] 2025-11-22 05:42:12,958 | INFO     | mean x: 1763746114.4255025
[2025-11-22 00:42:49] 2025-11-22 05:42:12,959 | INFO     | mean y: 2917112.1566181565
[2025-11-22 00:42:49] 2025-11-22 05:42:12,959 | INFO     | intersect: -9871285057.941526
[2025-11-22 00:42:49] 2025-11-22 05:42:12,960 | INFO     | chi2: 14.826341746401976
[2025-11-22 00:42:49] 2025-11-22 05:42:12,962 | INFO     | sum of square deviations: 922039701569.0459
[2025-11-22 00:42:49] 2025-11-22 05:42:13,030 | INFO     | sum of deviations: 5707566631913.855
[2025-11-22 00:42:49] 2025-11-22 05:42:13,031 | INFO     | mean x: 1763745961.930459
[2025-11-22 00:42:49] 2025-11-22 05:42:13,031 | INFO     | mean y: 2924878.9485396384
[2025-11-22 00:42:49] 2025-11-22 05:42:13,031 | INFO     | intersect: -10914932109.591621
[2025-11-22 00:42:49] 2025-11-22 05:42:13,033 | INFO     | chi2: 11.651565382111167
[2025-11-22 00:42:49] 2025-11-22 05:42:13,033 | INFO     | current chi2=11.651565382111167 (change=21.413079629445722 %)
[2025-11-22 00:42:49] 2025-11-22 05:42:13,033 | INFO     | right removable region: 1437
[2025-11-22 00:42:49] 2025-11-22 05:42:13,035 | INFO     | sum of square deviations: 922038446799.0463
[2025-11-22 00:42:49] 2025-11-22 05:42:13,109 | INFO     | sum of deviations: 4629423289091.93
[2025-11-22 00:42:49] 2025-11-22 05:42:13,109 | INFO     | mean x: 1763746266.930459
[2025-11-22 00:42:49] 2025-11-22 05:42:13,110 | INFO     | mean y: 2926379.0493741306
[2025-11-22 00:42:49] 2025-11-22 05:42:13,110 | INFO     | intersect: -8852591601.272295
[2025-11-22 00:42:49] 2025-11-22 05:42:13,112 | INFO     | chi2: 10.669942656798176
[2025-11-22 00:42:49] 2025-11-22 05:42:13,112 | INFO     | current chi2=10.669942656798176 (change=28.03388159194743 %)
[2025-11-22 00:42:49] 2025-11-22 05:42:13,114 | INFO     | sum of square deviations: 912453165276.2797
[2025-11-22 00:42:49] 2025-11-22 05:42:13,182 | INFO     | sum of deviations: 4132964702362.178
[2025-11-22 00:42:49] 2025-11-22 05:42:13,182 | INFO     | mean x: 1763746419.43545
[2025-11-22 00:42:49] 2025-11-22 05:42:13,182 | INFO     | mean y: 2934277.6071179346
[2025-11-22 00:42:49] 2025-11-22 05:42:13,183 | INFO     | intersect: -7985970767.439464
[2025-11-22 00:42:49] 2025-11-22 05:42:13,185 | INFO     | chi2: 7.818712153389103
[2025-11-22 00:42:49] 2025-11-22 05:42:13,185 | INFO     | current chi2=7.818712153389103 (change=26.722078975677142 %)
[2025-11-22 00:42:49] 2025-11-22 05:42:13,187 | INFO     | sum of square deviations: 902934797798.5774
[2025-11-22 00:42:49] 2025-11-22 05:42:13,264 | INFO     | time since job start (88150s) is within the limit (172800.0s)
[2025-11-22 00:42:49] 2025-11-22 05:42:13,266 | INFO     | sum of deviations: 3877052762332.132
[2025-11-22 00:42:49] 2025-11-22 05:42:13,266 | INFO     | mean x: 1763746571.9383752
[2025-11-22 00:42:49] 2025-11-22 05:42:13,267 | INFO     | mean y: 2938374.694677871
[2025-11-22 00:42:49] 2025-11-22 05:42:13,267 | INFO     | intersect: -7570297849.514865
[2025-11-22 00:42:49] 2025-11-22 05:42:13,270 | INFO     | chi2: 7.051763325689932
[2025-11-22 00:42:49] 2025-11-22 05:42:13,270 | INFO     | current chi2=7.051763325689932 (change=9.809145197482794 %)
[2025-11-22 00:42:49] 2025-11-22 05:42:13,270 | INFO     | left removable region: 30
[2025-11-22 00:42:49] 2025-11-22 05:42:13,273 | INFO     | sum of square deviations: 863683684933.7991
[2025-11-22 00:42:49] 2025-11-22 05:42:13,343 | INFO     | sum of deviations: 4187764967407.6763
[2025-11-22 00:42:49] 2025-11-22 05:42:13,343 | INFO     | mean x: 1763746846.434968
[2025-11-22 00:42:49] 2025-11-22 05:42:13,344 | INFO     | mean y: 2952839.8599857856
[2025-11-22 00:42:49] 2025-11-22 05:42:13,344 | INFO     | intersect: -8548971184.7813635
[2025-11-22 00:42:49] 2025-11-22 05:42:13,346 | INFO     | chi2: 2.946436741550333
[2025-11-22 00:42:49] 2025-11-22 05:42:13,346 | INFO     | current memory leak: 4.85 B/s (using 1407 data points, chi2=2.95)
[2025-11-22 00:42:49] 2025-11-22 05:42:13,347 | INFO     | could have reported an average CPU frequency of 2899 MHz (52 samples)
[2025-11-22 00:42:49] 2025-11-22 05:42:13,348 | INFO     | ..............................
[2025-11-22 00:42:49] 2025-11-22 05:42:13,348 | INFO     | . Timing measurements:
[2025-11-22 00:42:49] 2025-11-22 05:42:13,348 | INFO     | . get job = 0 s
[2025-11-22 00:42:49] 2025-11-22 05:42:13,348 | INFO     | . initial setup = 4 s
[2025-11-22 00:42:49] 2025-11-22 05:42:13,348 | INFO     | . payload setup = 48 s
[2025-11-22 00:42:49] 2025-11-22 05:42:13,348 | INFO     | . stage-in = 0 s
[2025-11-22 00:42:49] 2025-11-22 05:42:13,349 | INFO     | . payload execution = 88006 s
[2025-11-22 00:42:49] 2025-11-22 05:42:13,349 | INFO     | . stage-out = 4 s
[2025-11-22 00:42:49] 2025-11-22 05:42:13,349 | INFO     | . log creation = 1 s
[2025-11-22 00:42:49] 2025-11-22 05:42:13,350 | INFO     | ..............................
[2025-11-22 00:42:49] 2025-11-22 05:42:14,016 | INFO     | 
[2025-11-22 00:42:49] 2025-11-22 05:42:14,016 | INFO     | job summary report
[2025-11-22 00:42:49] 2025-11-22 05:42:14,016 | INFO     | --------------------------------------------------
[2025-11-22 00:42:49] 2025-11-22 05:42:14,016 | INFO     | PanDA job id: 6893877156
[2025-11-22 00:42:49] 2025-11-22 05:42:14,017 | INFO     | task id: 47523449
[2025-11-22 00:42:49] 2025-11-22 05:42:14,017 | INFO     | errors: (none)
[2025-11-22 00:42:49] 2025-11-22 05:42:14,017 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 00:42:49] 2025-11-22 05:42:14,017 | INFO     | pilot state: finished 
[2025-11-22 00:42:49] 2025-11-22 05:42:14,017 | INFO     | transexitcode: 0
[2025-11-22 00:42:49] 2025-11-22 05:42:14,017 | INFO     | exeerrorcode: 0
[2025-11-22 00:42:49] 2025-11-22 05:42:14,017 | INFO     | exeerrordiag: 
[2025-11-22 00:42:49] 2025-11-22 05:42:14,018 | INFO     | exitcode: 0
[2025-11-22 00:42:49] 2025-11-22 05:42:14,018 | INFO     | exitmsg: OK
[2025-11-22 00:42:49] 2025-11-22 05:42:14,018 | INFO     | cpuconsumptiontime: 475999 s
[2025-11-22 00:42:49] 2025-11-22 05:42:14,018 | INFO     | nevents: 1000
[2025-11-22 00:42:49] 2025-11-22 05:42:14,018 | INFO     | neventsw: 0
[2025-11-22 00:42:49] 2025-11-22 05:42:14,018 | INFO     | pid: 3877901
[2025-11-22 00:42:49] 2025-11-22 05:42:14,019 | INFO     | pgrp: 3877901
[2025-11-22 00:42:49] 2025-11-22 05:42:14,019 | INFO     | corecount: 8
[2025-11-22 00:42:49] 2025-11-22 05:42:14,019 | INFO     | event service: False
[2025-11-22 00:42:49] 2025-11-22 05:42:14,019 | INFO     | sizes: {0: 2298478, 1: 2298562, 2: 2298761, 3: 2298761, 14: 2298789, 25: 2298817, 35: 2299235, 36: 2299263, 88058: 2366898, 88059: 2366897, 88065: 2375947, 88066: 
[2025-11-22 00:42:49] 2025-11-22 05:42:14,019 | INFO     | --------------------------------------------------
[2025-11-22 00:42:49] 2025-11-22 05:42:14,019 | INFO     | 
[2025-11-22 00:42:49] 2025-11-22 05:42:14,024 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-22 00:42:49] 2025-11-22 05:42:14,093 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,094 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,094 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,094 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,094 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,094 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,095 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,095 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,095 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,095 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,095 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,095 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,096 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,096 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,096 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,096 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,096 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,096 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 00:42:49] 2025-11-22 05:42:14,097 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,098 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 00:42:49] 2025-11-22 05:42:14,098 | INFO     | job 6893877156 has completed (purged errors)
[2025-11-22 00:42:49] 2025-11-22 05:42:14,098 | INFO     | overall cleanup function is called
[2025-11-22 00:42:49] 2025-11-22 05:42:15,127 | INFO     | --- collectZombieJob: --- 10, [3877901]
[2025-11-22 00:42:49] 2025-11-22 05:42:15,127 | INFO     | zombie collector waiting for pid 3877901
[2025-11-22 00:42:49] 2025-11-22 05:42:15,127 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 00:42:49] 2025-11-22 05:42:15,127 | INFO     | collected zombie processes
[2025-11-22 00:42:49] 2025-11-22 05:42:15,128 | INFO     | will attempt to kill all subprocesses of pid=3877901
[2025-11-22 00:42:49] 2025-11-22 05:42:15,527 | INFO     | process IDs to be killed: [3877901] (in reverse order)
[2025-11-22 00:42:49] 2025-11-22 05:42:15,677 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 00:42:49] 2025-11-22 05:42:15,678 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 00:42:49] 2025-11-22 05:42:15,703 | INFO     | did not find any defunct processes belonging to 3877901
[2025-11-22 00:42:49] 2025-11-22 05:42:15,718 | INFO     | did not find any defunct processes belonging to 3877901
[2025-11-22 00:42:49] 2025-11-22 05:42:15,720 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 00:42:49] 2025-11-22 05:42:15,720 | INFO     | ready for new job
[2025-11-22 00:42:49] 2025-11-22 05:42:15,720 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 00:42:49] 2025-11-22 05:42:15,728 | INFO     | ***************************************
[2025-11-22 00:42:49] 2025-11-22 05:42:15,728 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 00:42:49] 2025-11-22 05:42:15,728 | INFO     | ***************************************
[2025-11-22 00:42:49] 2025-11-22 05:42:15,728 | INFO     | 
[2025-11-22 00:42:49] 2025-11-22 05:42:15,730 | INFO     | architecture information:
[2025-11-22 00:42:49] 2025-11-22 05:42:15,731 | INFO     | executing command: cat /etc/os-release
[2025-11-22 00:42:49] 2025-11-22 05:42:15,760 | INFO     | cat /etc/os-release:
[2025-11-22 00:42:49] NAME="CentOS Linux"
[2025-11-22 00:42:49] VERSION="7 (Core)"
[2025-11-22 00:42:49] ID="centos"
[2025-11-22 00:42:49] ID_LIKE="rhel fedora"
[2025-11-22 00:42:49] VERSION_ID="7"
[2025-11-22 00:42:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 00:42:49] ANSI_COLOR="0;31"
[2025-11-22 00:42:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 00:42:49] HOME_URL="https://www.centos.org/"
[2025-11-22 00:42:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 00:42:49] 
[2025-11-22 00:42:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 00:42:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 00:42:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 00:42:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 00:42:49] 
[2025-11-22 00:42:49] 2025-11-22 05:42:15,761 | INFO     | ***************************************
[2025-11-22 00:42:49] 2025-11-22 05:42:16,269 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-22 00:42:49] 2025-11-22 05:42:16,293 | INFO     | sufficient remaining disk space (47421849600 B)
[2025-11-22 00:42:49] 2025-11-22 05:42:16,294 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 00:42:49] 2025-11-22 05:42:16,295 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 00:42:49] 2025-11-22 05:42:16,296 | INFO     | update_server=False
[2025-11-22 00:42:49] 2025-11-22 05:42:16,296 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 00:42:49] 2025-11-22 05:42:16,297 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:42:49] 2025-11-22 05:42:16,297 | INFO     | aborting loop
[2025-11-22 00:42:49] 2025-11-22 05:42:16,349 | INFO     | all data control threads have been joined
[2025-11-22 00:42:49] 2025-11-22 05:42:16,366 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 00:42:49] 2025-11-22 05:42:16,699 | INFO     | all payload control threads have been joined
[2025-11-22 00:42:49] 2025-11-22 05:42:16,829 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 00:42:49] 2025-11-22 05:42:17,303 | INFO     | [job] job monitor thread has finished
[2025-11-22 00:42:49] 2025-11-22 05:42:17,305 | INFO     | [job] retrieve thread has finished
[2025-11-22 00:42:49] 2025-11-22 05:42:17,338 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 00:42:49] 2025-11-22 05:42:17,357 | INFO     | [data] control thread has finished
[2025-11-22 00:42:49] 2025-11-22 05:42:17,368 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 00:42:49] 2025-11-22 05:42:17,478 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 00:42:49] 2025-11-22 05:42:17,595 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 00:42:49] 2025-11-22 05:42:17,705 | INFO     | [payload] control thread has finished
[2025-11-22 00:42:49] 2025-11-22 05:42:17,739 | INFO     | all job control threads have been joined
[2025-11-22 00:42:49] 2025-11-22 05:42:18,004 | INFO     | [data] copytool_in thread has finished
[2025-11-22 00:42:49] 2025-11-22 05:42:18,242 | INFO     | [payload] validate_post thread has finished
[2025-11-22 00:42:49] 2025-11-22 05:42:18,308 | INFO     | [job] validate thread has finished
[2025-11-22 00:42:49] 2025-11-22 05:42:18,375 | INFO     | [data] copytool_out thread has finished
[2025-11-22 00:42:49] 2025-11-22 05:42:18,542 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:42:49] 2025-11-22 05:42:18,739 | INFO     | [payload] failed_post thread has finished
[2025-11-22 00:42:49] 2025-11-22 05:42:18,745 | INFO     | [job] control thread has finished
[2025-11-22 00:42:49] 2025-11-22 05:42:19,548 | INFO     | [job] queue monitor thread has finished
[2025-11-22 00:42:49] 2025-11-22 05:42:20,838 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 00:42:49] 2025-11-22 05:42:42,870 | INFO     | [monitor] cgroup control has ended
[2025-11-22 00:42:49] 2025-11-22 05:42:43,097 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140302372710208)>', '<ExcThread(monitor, started 140301733713664)>']
[2025-11-22 00:42:49] 2025-11-22 05:42:46,777 | INFO     | PID=3868750 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 00:42:49] 2025-11-22 05:42:46,777 | INFO     | .. there are 10 such processes running
[2025-11-22 00:42:49] 2025-11-22 05:42:46,778 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 00:42:49] 2025-11-22 05:42:46,778 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 00:42:49] 2025-11-22 05:42:46,778 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 00:42:49] 2025-11-22 05:42:46,778 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 00:42:49] 2025-11-22 05:42:46,779 | INFO     | [monitor] control thread has ended
[2025-11-22 00:42:49] 2025-11-22 05:42:48,123 | INFO     | all workflow threads have been joined
[2025-11-22 00:42:49] 2025-11-22 05:42:48,123 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 00:42:49] 2025-11-22 05:42:48,123 | INFO     | traces error code: 0
[2025-11-22 00:42:49] 2025-11-22 05:42:48,124 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 00:42:49] 2025-11-22 05:42:48,358 [wrapper] ==== pilot stdout END ====
[2025-11-22 00:42:49] 2025-11-22 05:42:48,414 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 00:42:49] 2025-11-22 05:42:48,481 [wrapper] pilotpid: 3868750
[2025-11-22 00:42:49] 2025-11-22 05:42:48,613 [wrapper] Pilot exit status: 0
[2025-11-22 00:42:49] 2025-11-22 05:42:48,711 [wrapper] pandaids: 6893877156
[2025-11-22 00:42:49] 2025-11-22 05:42:48,860 [wrapper] cleanup supervisor_pilot 1627138 3868751
[2025-11-22 00:42:49] 2025-11-22 05:42:48,876 [wrapper] Test setup, not cleaning
[2025-11-22 00:42:49] 2025-11-22 05:42:48,884 [wrapper] apfmon messages muted
[2025-11-22 00:42:49] 2025-11-22 05:42:48,898 [wrapper] ==== wrapper stdout END ====
[2025-11-22 00:42:49] 2025-11-22 05:42:48,904 [wrapper] ==== wrapper stderr END ====
[2025-11-22 00:42:49]  *** Error codes and diagnostics ***
[2025-11-22 00:42:49]     "exeErrorCode": 0,
[2025-11-22 00:42:49]     "exeErrorDiag": "",
[2025-11-22 00:42:49]     "pilotErrorCode": 0,
[2025-11-22 00:42:49]     "pilotErrorDiag": "",
[2025-11-22 00:42:49]  *** Listing of results directory ***
[2025-11-22 00:42:49] total 1331624
[2025-11-22 00:42:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 13:04 pilot3.tar.gz
[2025-11-22 00:42:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 13:19 queuedata.json
[2025-11-22 00:42:49] -rwx------. 1 boincer umatlas     36292 Nov 20 13:19 runpilot2-wrapper.sh
[2025-11-22 00:42:49] -rw-r--r--. 1 boincer umatlas       100 Nov 21 00:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 00:42:49] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 00:11 run_atlas
[2025-11-22 00:42:49] -rw-r--r--. 1 boincer umatlas       105 Nov 21 00:11 job.xml
[2025-11-22 00:42:49] -rw-r--r--. 2 boincer umatlas 411047783 Nov 21 00:11 EVNT.47493127._000791.pool.root.1
[2025-11-22 00:42:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:11 start_atlas.sh
[2025-11-22 00:42:49] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 00:11 shared
[2025-11-22 00:42:49] -rw-r--r--. 2 boincer umatlas    590104 Nov 21 00:11 input.tar.gz
[2025-11-22 00:42:49] -rw-r--r--. 1 boincer umatlas         0 Nov 21 00:11 boinc_lockfile
[2025-11-22 00:42:49] -rw-r--r--. 1 boincer umatlas      2784 Nov 21 00:11 pandaJob.out
[2025-11-22 00:42:49] -rw-------. 1 boincer umatlas        57 Nov 21 00:11 setup.sh.local
[2025-11-22 00:42:49] -rw-------. 1 boincer umatlas    989817 Nov 21 00:12 agis_schedconf.cvmfs.json
[2025-11-22 00:42:49] drwx------. 5 boincer umatlas      4096 Nov 21 00:13 pilot3
[2025-11-22 00:42:49] -rw-r--r--. 1 boincer umatlas       533 Nov 22 00:22 boinc_task_state.xml
[2025-11-22 00:42:49] -rw-r--r--. 1 boincer umatlas      6525 Nov 22 00:39 init_data.xml
[2025-11-22 00:42:49] -rw-------. 1 boincer umatlas 919993711 Nov 22 00:41 HITS.47523449._007907.pool.root.1
[2025-11-22 00:42:49] -rw-------. 1 boincer umatlas      1061 Nov 22 00:41 memory_monitor_summary.json
[2025-11-22 00:42:49] -rw-------. 1 boincer umatlas   1526164 Nov 22 00:41 agis_ddmendpoints.agis.ALL.json
[2025-11-22 00:42:49] -rw-------. 1 boincer umatlas   2524960 Nov 22 00:41 log.47523449._007907.job.log.tgz.1
[2025-11-22 00:42:49] -rw-------. 1 boincer umatlas      8643 Nov 22 00:42 heartbeat.json
[2025-11-22 00:42:49] -rw-------. 1 boincer umatlas        95 Nov 22 00:42 pilot_heartbeat.json
[2025-11-22 00:42:49] -rw-r--r--. 1 boincer umatlas        29 Nov 22 00:42 wrapper_checkpoint.txt
[2025-11-22 00:42:49] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 00:42 boinc_mmap_file
[2025-11-22 00:42:49] -rw-------. 1 boincer umatlas      4824 Nov 22 00:42 pilotlog.txt
[2025-11-22 00:42:49] -rw-------. 1 boincer umatlas  11782522 Nov 22 00:42 log.47523449._007907.job.log.1
[2025-11-22 00:42:49] -rw-------. 1 boincer umatlas       353 Nov 22 00:42 output.list
[2025-11-22 00:42:49] -rw-r--r--. 1 boincer umatlas       620 Nov 22 00:42 runtime_log
[2025-11-22 00:42:49] -rw-------. 1 boincer umatlas  14325760 Nov 22 00:42 result.tar.gz
[2025-11-22 00:42:49] -rw-r--r--. 1 boincer umatlas      9343 Nov 22 00:42 runtime_log.err
[2025-11-22 00:42:49] -rw-------. 1 boincer umatlas       662 Nov 22 00:42 NATNDmcQOg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBxGKDmRq6bLm.diag
[2025-11-22 00:42:49] -rw-r--r--. 1 boincer umatlas     21367 Nov 22 00:42 stderr.txt
[2025-11-22 00:42:49] HITS file was successfully produced:
[2025-11-22 00:42:49] -rw-------. 1 boincer umatlas 919993711 Nov 22 00:41 shared/HITS.pool.root.1
[2025-11-22 00:42:49]  *** Contents of shared directory: ***
[2025-11-22 00:42:49] total 1314444
[2025-11-22 00:42:49] -rw-r--r--. 2 boincer umatlas 411047783 Nov 21 00:11 ATLAS.root_0
[2025-11-22 00:42:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:11 start_atlas.sh
[2025-11-22 00:42:49] -rw-r--r--. 2 boincer umatlas    590104 Nov 21 00:11 input.tar.gz
[2025-11-22 00:42:49] -rw-------. 1 boincer umatlas 919993711 Nov 22 00:41 HITS.pool.root.1
[2025-11-22 00:42:49] -rw-------. 1 boincer umatlas  14325760 Nov 22 00:42 result.tar.gz
00:42:50 (3862658): run_atlas exited; CPU time 477802.231056
00:42:50 (3862658): called boinc_finish(0)

</stderr_txt>
]]>

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