Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:02:44 (3241874): wrapper (7.7.26015): starting
02:02:44 (3241874): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 02:02:44] Arguments: --nthreads 8
[2025-11-21 02:02:44] Threads: 8
[2025-11-21 02:02:44] Checking for CVMFS
[2025-11-21 02:02:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 02:02:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 02:02:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 02:02:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 02:02:46] 2.13.3.0 6317 22524 341384 153111 1 335 34428421 40960000 13204 16776704 0 76549181 99.635 71365941 29281 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 02:02:46] CVMFS is ok
[2025-11-21 02:02:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 02:02:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 02:02:47] Further information can be found at the LHC@home message board.
[2025-11-21 02:02:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 02:02:47] Checking for apptainer binary...
[2025-11-21 02:02:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 02:02:47] Running /usr/bin/apptainer --version
[2025-11-21 02:02:47] apptainer version 1.4.4-1.el9
[2025-11-21 02:02:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 02:02:47] c6-8-12-2.aglt2.org
[2025-11-21 02:02:47] apptainer works
[2025-11-21 02:02:47] Set ATHENA_PROC_NUMBER=8
[2025-11-21 02:02:47] Set ATHENA_CORE_NUMBER=8
[2025-11-21 02:02:47] Starting ATLAS job with PandaID=6891592844
[2025-11-21 02:02:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 12:05:58]  *** The last 200 lines of the pilot log: ***
[2025-11-21 12:05:58] 2025-11-21 17:05:18,856 | INFO     | .. there are 33 such processes running
[2025-11-21 12:05:58] 2025-11-21 17:05:19,857 | INFO     | time since job start (36099s) is within the limit (172800.0s)
[2025-11-21 12:05:58] 2025-11-21 17:05:20,200 | INFO     | monitor loop #2435: job 0:6891592844 is in state 'finished'
[2025-11-21 12:05:58] 2025-11-21 17:05:20,200 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 12:05:58] 2025-11-21 17:05:21,864 | INFO     | time since job start (36101s) is within the limit (172800.0s)
[2025-11-21 12:05:58] 2025-11-21 17:05:22,705 | INFO     | monitor loop #2436: job 0:6891592844 is in state 'finished'
[2025-11-21 12:05:58] 2025-11-21 17:05:22,705 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 12:05:58] 2025-11-21 17:05:23,871 | INFO     | time since job start (36103s) is within the limit (172800.0s)
[2025-11-21 12:05:58] 2025-11-21 17:05:25,210 | INFO     | monitor loop #2437: job 0:6891592844 is in state 'finished'
[2025-11-21 12:05:58] 2025-11-21 17:05:25,210 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 12:05:58] 2025-11-21 17:05:25,492 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 12:05:58] 2025-11-21 17:05:25,507 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3092.9640357142857
[2025-11-21 12:05:58] 2025-11-21 17:05:25,527 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6891592844/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 12:05:58] 2025-11-21 17:05:25,527 | INFO     | extracted standard info from prmon json
[2025-11-21 12:05:58] 2025-11-21 17:05:25,528 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 12:05:58] 2025-11-21 17:05:25,528 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 12:05:58] 2025-11-21 17:05:25,537 | INFO     | fitting pss+swap vs Time
[2025-11-21 12:05:58] 2025-11-21 17:05:25,538 | INFO     | sum of square deviations: 63683146228.23047
[2025-11-21 12:05:58] 2025-11-21 17:05:25,544 | INFO     | sum of deviations: 509287183004.0242
[2025-11-21 12:05:58] 2025-11-21 17:05:25,544 | INFO     | mean x: 1763726678.1830509
[2025-11-21 12:05:58] 2025-11-21 17:05:25,544 | INFO     | mean y: 2832174.3423728812
[2025-11-21 12:05:58] 2025-11-21 17:05:25,544 | INFO     | intersect: -14102051844.762568
[2025-11-21 12:05:58] 2025-11-21 17:05:25,545 | INFO     | chi2: 12.988067850095069
[2025-11-21 12:05:58] 2025-11-21 17:05:25,546 | INFO     | sum of square deviations: 62077852993.37773
[2025-11-21 12:05:58] 2025-11-21 17:05:25,552 | INFO     | sum of deviations: 701329611394.7561
[2025-11-21 12:05:58] 2025-11-21 17:05:25,552 | INFO     | mean x: 1763726525.6888888
[2025-11-21 12:05:58] 2025-11-21 17:05:25,552 | INFO     | mean y: 2850420.6085470086
[2025-11-21 12:05:58] 2025-11-21 17:05:25,552 | INFO     | intersect: -19922993970.30436
[2025-11-21 12:05:58] 2025-11-21 17:05:25,553 | INFO     | chi2: 9.790615299596128
[2025-11-21 12:05:58] 2025-11-21 17:05:25,553 | INFO     | current chi2=9.790615299596128 (change=24.61838502387818 %)
[2025-11-21 12:05:58] 2025-11-21 17:05:25,553 | INFO     | right removable region: 584
[2025-11-21 12:05:58] 2025-11-21 17:05:25,553 | INFO     | sum of square deviations: 62077607163.377754
[2025-11-21 12:05:58] 2025-11-21 17:05:25,560 | INFO     | sum of deviations: 294600339627.26666
[2025-11-21 12:05:58] 2025-11-21 17:05:25,560 | INFO     | mean x: 1763726830.6888888
[2025-11-21 12:05:58] 2025-11-21 17:05:25,560 | INFO     | mean y: 2852554.517948718
[2025-11-21 12:05:58] 2025-11-21 17:05:25,560 | INFO     | intersect: -8367227206.500939
[2025-11-21 12:05:58] 2025-11-21 17:05:25,561 | INFO     | chi2: 9.48111543460383
[2025-11-21 12:05:58] 2025-11-21 17:05:25,561 | INFO     | current chi2=9.48111543460383 (change=27.001340430059194 %)
[2025-11-21 12:05:58] 2025-11-21 17:05:25,561 | INFO     | sum of square deviations: 60499313474.37236
[2025-11-21 12:05:58] 2025-11-21 17:05:25,567 | INFO     | sum of deviations: 181192192082.30338
[2025-11-21 12:05:58] 2025-11-21 17:05:25,567 | INFO     | mean x: 1763726983.1931036
[2025-11-21 12:05:58] 2025-11-21 17:05:25,568 | INFO     | mean y: 2863482.675862069
[2025-11-21 12:05:58] 2025-11-21 17:05:25,568 | INFO     | intersect: -5279404033.547083
[2025-11-21 12:05:58] 2025-11-21 17:05:25,568 | INFO     | chi2: 8.283951147191525
[2025-11-21 12:05:58] 2025-11-21 17:05:25,569 | INFO     | current chi2=8.283951147191525 (change=12.626829571581188 %)
[2025-11-21 12:05:58] 2025-11-21 17:05:25,569 | INFO     | left removable region: 20
[2025-11-21 12:05:58] 2025-11-21 17:05:25,569 | INFO     | sum of square deviations: 55629515837.31909
[2025-11-21 12:05:58] 2025-11-21 17:05:25,576 | INFO     | sum of deviations: 353741456087.8935
[2025-11-21 12:05:58] 2025-11-21 17:05:25,576 | INFO     | mean x: 1763727105.1914895
[2025-11-21 12:05:58] 2025-11-21 17:05:25,576 | INFO     | mean y: 2893142.6028368794
[2025-11-21 12:05:58] 2025-11-21 17:05:25,576 | INFO     | intersect: -11212437153.577394
[2025-11-21 12:05:58] 2025-11-21 17:05:25,576 | INFO     | chi2: 4.125284682013967
[2025-11-21 12:05:58] 2025-11-21 17:05:25,577 | INFO     | current memory leak: 6.36 B/s (using 564 data points, chi2=4.13)
[2025-11-21 12:05:58] 2025-11-21 17:05:25,577 | INFO     | could have reported an average CPU frequency of 3069 MHz (23 samples)
[2025-11-21 12:05:58] 2025-11-21 17:05:25,578 | INFO     | ..............................
[2025-11-21 12:05:58] 2025-11-21 17:05:25,578 | INFO     | . Timing measurements:
[2025-11-21 12:05:58] 2025-11-21 17:05:25,578 | INFO     | . get job = 0 s
[2025-11-21 12:05:58] 2025-11-21 17:05:25,578 | INFO     | . initial setup = 4 s
[2025-11-21 12:05:58] 2025-11-21 17:05:25,578 | INFO     | . payload setup = 33 s
[2025-11-21 12:05:58] 2025-11-21 17:05:25,578 | INFO     | . stage-in = 0 s
[2025-11-21 12:05:58] 2025-11-21 17:05:25,578 | INFO     | . payload execution = 35999 s
[2025-11-21 12:05:58] 2025-11-21 17:05:25,578 | INFO     | . stage-out = 6 s
[2025-11-21 12:05:58] 2025-11-21 17:05:25,578 | INFO     | . log creation = 1 s
[2025-11-21 12:05:58] 2025-11-21 17:05:25,578 | INFO     | ..............................
[2025-11-21 12:05:58] 2025-11-21 17:05:25,702 | INFO     | 
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | job summary report
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | --------------------------------------------------
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | PanDA job id: 6891592844
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | task id: 47493068
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | errors: (none)
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | pilot state: finished 
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | transexitcode: 0
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | exeerrorcode: 0
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | exeerrordiag: 
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | exitcode: 0
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | exitmsg: OK
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | cpuconsumptiontime: 222317 s
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | nevents: 1000
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | neventsw: 0
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | pid: 3255282
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | pgrp: 3255282
[2025-11-21 12:05:58] 2025-11-21 17:05:25,703 | INFO     | corecount: 8
[2025-11-21 12:05:58] 2025-11-21 17:05:25,704 | INFO     | event service: False
[2025-11-21 12:05:58] 2025-11-21 17:05:25,704 | INFO     | sizes: {0: 2298624, 1: 2298823, 12: 2298823, 16: 2299113, 23: 2299141, 36036: 2342021, 36037: 2342148, 36044: 2351254, 36066: 2351444}
[2025-11-21 12:05:58] 2025-11-21 17:05:25,704 | INFO     | --------------------------------------------------
[2025-11-21 12:05:58] 2025-11-21 17:05:25,704 | INFO     | 
[2025-11-21 12:05:58] 2025-11-21 17:05:25,704 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-21 12:05:58] 2025-11-21 17:05:25,776 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,776 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,776 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,776 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,776 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,776 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,777 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,777 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,777 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,777 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,777 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,777 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,777 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,777 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,777 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,777 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,777 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,777 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 12:05:58] 2025-11-21 17:05:25,777 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,777 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 12:05:58] 2025-11-21 17:05:25,778 | INFO     | job 6891592844 has completed (purged errors)
[2025-11-21 12:05:58] 2025-11-21 17:05:25,778 | INFO     | overall cleanup function is called
[2025-11-21 12:05:58] 2025-11-21 17:05:26,800 | INFO     | --- collectZombieJob: --- 10, [3255282]
[2025-11-21 12:05:58] 2025-11-21 17:05:26,800 | INFO     | zombie collector waiting for pid 3255282
[2025-11-21 12:05:58] 2025-11-21 17:05:26,800 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 12:05:58] 2025-11-21 17:05:26,800 | INFO     | collected zombie processes
[2025-11-21 12:05:58] 2025-11-21 17:05:26,800 | INFO     | will attempt to kill all subprocesses of pid=3255282
[2025-11-21 12:05:58] 2025-11-21 17:05:27,271 | INFO     | process IDs to be killed: [3255282] (in reverse order)
[2025-11-21 12:05:58] 2025-11-21 17:05:27,398 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 12:05:58] 2025-11-21 17:05:27,399 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 12:05:58] 2025-11-21 17:05:27,419 | INFO     | did not find any defunct processes belonging to 3255282
[2025-11-21 12:05:58] 2025-11-21 17:05:27,460 | INFO     | did not find any defunct processes belonging to 3255282
[2025-11-21 12:05:58] 2025-11-21 17:05:27,462 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 12:05:58] 2025-11-21 17:05:27,462 | INFO     | ready for new job
[2025-11-21 12:05:58] 2025-11-21 17:05:27,462 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 12:05:58] 2025-11-21 17:05:27,470 | INFO     | ***************************************
[2025-11-21 12:05:58] 2025-11-21 17:05:27,470 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 12:05:58] 2025-11-21 17:05:27,470 | INFO     | ***************************************
[2025-11-21 12:05:58] 2025-11-21 17:05:27,470 | INFO     | 
[2025-11-21 12:05:58] 2025-11-21 17:05:27,473 | INFO     | architecture information:
[2025-11-21 12:05:58] 2025-11-21 17:05:27,478 | INFO     | executing command: cat /etc/os-release
[2025-11-21 12:05:58] 2025-11-21 17:05:27,570 | INFO     | cat /etc/os-release:
[2025-11-21 12:05:58] NAME="CentOS Linux"
[2025-11-21 12:05:58] VERSION="7 (Core)"
[2025-11-21 12:05:58] ID="centos"
[2025-11-21 12:05:58] ID_LIKE="rhel fedora"
[2025-11-21 12:05:58] VERSION_ID="7"
[2025-11-21 12:05:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 12:05:58] ANSI_COLOR="0;31"
[2025-11-21 12:05:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 12:05:58] HOME_URL="https://www.centos.org/"
[2025-11-21 12:05:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 12:05:58] 
[2025-11-21 12:05:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 12:05:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 12:05:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 12:05:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 12:05:58] 
[2025-11-21 12:05:58] 2025-11-21 17:05:27,570 | INFO     | ***************************************
[2025-11-21 12:05:58] 2025-11-21 17:05:28,084 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-21 12:05:58] 2025-11-21 17:05:28,154 | INFO     | sufficient remaining disk space (67798827008 B)
[2025-11-21 12:05:58] 2025-11-21 17:05:28,154 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 12:05:58] 2025-11-21 17:05:28,155 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 12:05:58] 2025-11-21 17:05:28,155 | INFO     | update_server=False
[2025-11-21 12:05:58] 2025-11-21 17:05:28,155 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 12:05:58] 2025-11-21 17:05:28,156 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 12:05:58] 2025-11-21 17:05:28,721 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:05:58] 2025-11-21 17:05:28,721 | INFO     | aborting loop
[2025-11-21 12:05:58] 2025-11-21 17:05:28,823 | INFO     | all payload control threads have been joined
[2025-11-21 12:05:58] 2025-11-21 17:05:29,135 | INFO     | all job control threads have been joined
[2025-11-21 12:05:58] 2025-11-21 17:05:29,156 | INFO     | all data control threads have been joined
[2025-11-21 12:05:58] 2025-11-21 17:05:29,164 | INFO     | [job] retrieve thread has finished
[2025-11-21 12:05:58] 2025-11-21 17:05:29,221 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 12:05:58] 2025-11-21 17:05:29,248 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 12:05:58] 2025-11-21 17:05:29,298 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 12:05:58] 2025-11-21 17:05:29,373 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 12:05:58] 2025-11-21 17:05:29,375 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 12:05:58] 2025-11-21 17:05:29,447 | INFO     | [payload] validate_post thread has finished
[2025-11-21 12:05:58] 2025-11-21 17:05:29,642 | INFO     | [data] copytool_in thread has finished
[2025-11-21 12:05:58] 2025-11-21 17:05:29,727 | INFO     | [job] job monitor thread has finished
[2025-11-21 12:05:58] 2025-11-21 17:05:29,829 | INFO     | [payload] control thread has finished
[2025-11-21 12:05:58] 2025-11-21 17:05:29,926 | INFO     | [job] validate thread has finished
[2025-11-21 12:05:58] 2025-11-21 17:05:29,941 | INFO     | [payload] failed_post thread has finished
[2025-11-21 12:05:58] 2025-11-21 17:05:30,141 | INFO     | [job] control thread has finished
[2025-11-21 12:05:58] 2025-11-21 17:05:30,161 | INFO     | [data] control thread has finished
[2025-11-21 12:05:58] 2025-11-21 17:05:30,720 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:05:58] 2025-11-21 17:05:31,230 | INFO     | [data] copytool_out thread has finished
[2025-11-21 12:05:58] 2025-11-21 17:05:31,726 | INFO     | [job] queue monitor thread has finished
[2025-11-21 12:05:58] 2025-11-21 17:05:32,166 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 12:05:58] 2025-11-21 17:05:41,408 | INFO     | [monitor] cgroup control has ended
[2025-11-21 12:05:58] 2025-11-21 17:05:42,877 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140543744116544)>', '<ExcThread(monitor, started 140543250122496)>']
[2025-11-21 12:05:58] 2025-11-21 17:05:47,905 | INFO     | all workflow threads have been joined
[2025-11-21 12:05:58] 2025-11-21 17:05:47,905 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 12:05:58] 2025-11-21 17:05:47,905 | INFO     | traces error code: 0
[2025-11-21 12:05:58] 2025-11-21 17:05:47,905 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 12:05:58] 2025-11-21 17:05:57,916 | INFO     | PID=3246892 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 12:05:58] 2025-11-21 17:05:57,916 | INFO     | .. there are 33 such processes running
[2025-11-21 12:05:58] 2025-11-21 17:05:57,921 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 12:05:58] 2025-11-21 17:05:57,921 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 12:05:58] 2025-11-21 17:05:57,921 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 12:05:58] 2025-11-21 17:05:57,921 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 12:05:58] 2025-11-21 17:05:57,921 | INFO     | [monitor] control thread has ended
[2025-11-21 12:05:58] 2025-11-21 17:05:58,451 [wrapper] ==== pilot stdout END ====
[2025-11-21 12:05:58] 2025-11-21 17:05:58,453 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 12:05:58] 2025-11-21 17:05:58,455 [wrapper] pilotpid: 3246892
[2025-11-21 12:05:58] 2025-11-21 17:05:58,458 [wrapper] Pilot exit status: 0
[2025-11-21 12:05:58] 2025-11-21 17:05:58,488 [wrapper] pandaids: 6891592844
[2025-11-21 12:05:58] 2025-11-21 17:05:58,594 [wrapper] cleanup supervisor_pilot 1055846 3246893
[2025-11-21 12:05:58] 2025-11-21 17:05:58,597 [wrapper] Test setup, not cleaning
[2025-11-21 12:05:58] 2025-11-21 17:05:58,600 [wrapper] apfmon messages muted
[2025-11-21 12:05:58] 2025-11-21 17:05:58,603 [wrapper] ==== wrapper stdout END ====
[2025-11-21 12:05:58] 2025-11-21 17:05:58,606 [wrapper] ==== wrapper stderr END ====
[2025-11-21 12:05:58]  *** Error codes and diagnostics ***
[2025-11-21 12:05:58]     "exeErrorCode": 0,
[2025-11-21 12:05:58]     "exeErrorDiag": "",
[2025-11-21 12:05:58]     "pilotErrorCode": 0,
[2025-11-21 12:05:58]     "pilotErrorDiag": "",
[2025-11-21 12:05:58]  *** Listing of results directory ***
[2025-11-21 12:05:58] total 1312548
[2025-11-21 12:05:58] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 13:25 queuedata.json
[2025-11-21 12:05:58] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 13:27 pilot3.tar.gz
[2025-11-21 12:05:58] -rwx------. 1 boincer umatlas     36292 Nov 18 13:28 runpilot2-wrapper.sh
[2025-11-21 12:05:58] -rw-r--r--. 1 boincer umatlas       100 Nov 21 02:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 12:05:58] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 02:02 run_atlas
[2025-11-21 12:05:58] -rw-r--r--. 1 boincer umatlas       105 Nov 21 02:02 job.xml
[2025-11-21 12:05:58] -rw-r--r--. 2 boincer umatlas 408143055 Nov 21 02:02 EVNT.47493065._000653.pool.root.1
[2025-11-21 12:05:58] -rw-r--r--. 2 boincer umatlas     15120 Nov 21 02:02 start_atlas.sh
[2025-11-21 12:05:58] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 02:02 shared
[2025-11-21 12:05:58] -rw-r--r--. 2 boincer umatlas    590096 Nov 21 02:02 input.tar.gz
[2025-11-21 12:05:58] -rw-r--r--. 1 boincer umatlas         0 Nov 21 02:02 boinc_lockfile
[2025-11-21 12:05:58] -rw-r--r--. 1 boincer umatlas      2772 Nov 21 02:02 pandaJob.out
[2025-11-21 12:05:58] -rw-------. 1 boincer umatlas    989817 Nov 21 02:03 agis_schedconf.cvmfs.json
[2025-11-21 12:05:58] drwx------. 5 boincer umatlas      4096 Nov 21 02:03 pilot3
[2025-11-21 12:05:58] -rw-r--r--. 1 boincer umatlas       533 Nov 21 11:46 boinc_task_state.xml
[2025-11-21 12:05:58] -rw-r--r--. 1 boincer umatlas      6843 Nov 21 12:00 init_data.xml
[2025-11-21 12:05:58] -rw-------. 1 boincer umatlas 918346480 Nov 21 12:04 HITS.47493068._006030.pool.root.1
[2025-11-21 12:05:58] -rw-------. 1 boincer umatlas      1049 Nov 21 12:04 memory_monitor_summary.json
[2025-11-21 12:05:58] -rw-------. 1 boincer umatlas   1526164 Nov 21 12:05 agis_ddmendpoints.agis.ALL.json
[2025-11-21 12:05:58] -rw-------. 1 boincer umatlas   1863873 Nov 21 12:05 log.47493068._006030.job.log.tgz.1
[2025-11-21 12:05:58] -rw-------. 1 boincer umatlas      8624 Nov 21 12:05 heartbeat.json
[2025-11-21 12:05:58] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 12:05 boinc_mmap_file
[2025-11-21 12:05:58] -rw-r--r--. 1 boincer umatlas        29 Nov 21 12:05 wrapper_checkpoint.txt
[2025-11-21 12:05:58] -rw-------. 1 boincer umatlas       823 Nov 21 12:05 pilotlog.txt
[2025-11-21 12:05:58] -rw-------. 1 boincer umatlas        95 Nov 21 12:05 pilot_heartbeat.json
[2025-11-21 12:05:58] -rw-------. 1 boincer umatlas   4955480 Nov 21 12:05 log.47493068._006030.job.log.1
[2025-11-21 12:05:58] -rw-------. 1 boincer umatlas       353 Nov 21 12:05 output.list
[2025-11-21 12:05:58] -rw-r--r--. 1 boincer umatlas       620 Nov 21 12:05 runtime_log
[2025-11-21 12:05:58] -rw-------. 1 boincer umatlas   6840320 Nov 21 12:05 result.tar.gz
[2025-11-21 12:05:58] -rw-r--r--. 1 boincer umatlas      8709 Nov 21 12:05 runtime_log.err
[2025-11-21 12:05:58] -rw-------. 1 boincer umatlas       661 Nov 21 12:05 e35LDmFcff8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3gFKDmCEEC3n.diag
[2025-11-21 12:05:58] -rw-r--r--. 1 boincer umatlas     21544 Nov 21 12:05 stderr.txt
[2025-11-21 12:05:58] HITS file was successfully produced:
[2025-11-21 12:05:58] -rw-------. 1 boincer umatlas 918346480 Nov 21 12:04 shared/HITS.pool.root.1
[2025-11-21 12:05:58]  *** Contents of shared directory: ***
[2025-11-21 12:05:58] total 1302688
[2025-11-21 12:05:58] -rw-r--r--. 2 boincer umatlas 408143055 Nov 21 02:02 ATLAS.root_0
[2025-11-21 12:05:58] -rw-r--r--. 2 boincer umatlas     15120 Nov 21 02:02 start_atlas.sh
[2025-11-21 12:05:58] -rw-r--r--. 2 boincer umatlas    590096 Nov 21 02:02 input.tar.gz
[2025-11-21 12:05:58] -rw-------. 1 boincer umatlas 918346480 Nov 21 12:04 HITS.pool.root.1
[2025-11-21 12:05:58] -rw-------. 1 boincer umatlas   6840320 Nov 21 12:05 result.tar.gz
12:06:00 (3241874): run_atlas exited; CPU time 223320.004669
12:06:00 (3241874): called boinc_finish(0)

</stderr_txt>
]]>

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