Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:04 (3440413): wrapper (7.7.26015): starting
00:01:04 (3440413): wrapper: running run_atlas (--nthreads 9)
[2025-11-22 00:01:04] Arguments: --nthreads 9
[2025-11-22 00:01:04] Threads: 9
[2025-11-22 00:01:04] Checking for CVMFS
[2025-11-22 00:01:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:01:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:01:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:01:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:01:07] 2.13.3.0 11561 22146 250380 153159 0 762 19127976 32935937 19796 16776704 0 134979761 99.800 66520163 32103 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 00:01:07] CVMFS is ok
[2025-11-22 00:01:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:01:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:01:07] Further information can be found at the LHC@home message board.
[2025-11-22 00:01:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:01:07] Checking for apptainer binary...
[2025-11-22 00:01:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:01:07] Running /usr/bin/apptainer --version
[2025-11-22 00:01:07] apptainer version 1.4.4-1.el9
[2025-11-22 00:01:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:01:07] c-8-14.aglt2.org
[2025-11-22 00:01:07] apptainer works
[2025-11-22 00:01:07] Set ATHENA_PROC_NUMBER=9
[2025-11-22 00:01:07] Set ATHENA_CORE_NUMBER=9
[2025-11-22 00:01:07] Starting ATLAS job with PandaID=6893848485
[2025-11-22 00:01:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 20:46:39]  *** The last 200 lines of the pilot log: ***
[2025-11-23 20:46:39] 2025-11-23 21:29:16,613 | INFO     | time since job start (145639s) is within the limit (172800.0s)
[2025-11-23 20:46:39] 2025-11-23 21:29:17,555 | INFO     | monitor loop #7121: job 0:6893848485 is in state 'finished'
[2025-11-23 20:46:39] 2025-11-23 21:29:17,555 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 20:46:39] 2025-11-23 21:29:18,548 | INFO     | PID=3458292 has CPU usage=16.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-23 20:46:39] 2025-11-23 21:29:18,548 | INFO     | .. there are 38 such processes running
[2025-11-23 20:46:39] 2025-11-23 21:29:19,550 | INFO     | time since job start (145642s) is within the limit (172800.0s)
[2025-11-23 20:46:39] 2025-11-23 21:29:20,078 | INFO     | monitor loop #7122: job 0:6893848485 is in state 'finished'
[2025-11-23 20:46:39] 2025-11-23 21:29:20,078 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 20:46:39] 2025-11-23 21:29:21,566 | INFO     | time since job start (145644s) is within the limit (172800.0s)
[2025-11-23 20:46:39] 2025-11-23 21:29:22,584 | INFO     | monitor loop #7123: job 0:6893848485 is in state 'finished'
[2025-11-23 20:46:39] 2025-11-23 21:29:22,584 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 20:46:39] 2025-11-23 21:29:23,578 | INFO     | time since job start (145646s) is within the limit (172800.0s)
[2025-11-23 20:46:39] 2025-11-23 21:29:25,092 | INFO     | monitor loop #7124: job 0:6893848485 is in state 'finished'
[2025-11-23 20:46:39] 2025-11-23 21:29:25,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 20:46:39] 2025-11-23 21:29:25,602 | INFO     | time since job start (145648s) is within the limit (172800.0s)
[2025-11-23 20:46:39] 2025-11-23 21:29:25,921 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 20:46:39] 2025-11-23 21:29:25,928 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.157175
[2025-11-23 20:46:39] 2025-11-23 21:29:25,935 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6893848485/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 20:46:39] 2025-11-23 21:29:25,936 | INFO     | extracted standard info from prmon json
[2025-11-23 20:46:39] 2025-11-23 21:29:25,936 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 20:46:39] 2025-11-23 21:29:25,936 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 20:46:39] 2025-11-23 21:29:25,980 | INFO     | fitting pss+swap vs Time
[2025-11-23 20:46:39] 2025-11-23 21:29:25,984 | INFO     | sum of square deviations: 4211842658329.0093
[2025-11-23 20:46:39] 2025-11-23 21:29:26,124 | INFO     | sum of deviations: 199091900534298.47
[2025-11-23 20:46:39] 2025-11-23 21:29:26,125 | INFO     | mean x: 1763860558.9710813
[2025-11-23 20:46:39] 2025-11-23 21:29:26,125 | INFO     | mean y: 4635657.816010059
[2025-11-23 20:46:39] 2025-11-23 21:29:26,125 | INFO     | intersect: -83372256465.30157
[2025-11-23 20:46:39] 2025-11-23 21:29:26,128 | INFO     | chi2: 329.932264482754
[2025-11-23 20:46:39] 2025-11-23 21:29:26,131 | INFO     | sum of square deviations: 4185422544206.5303
[2025-11-23 20:46:39] 2025-11-23 21:29:26,264 | INFO     | sum of deviations: 200531438467629.25
[2025-11-23 20:46:39] 2025-11-23 21:29:26,264 | INFO     | mean x: 1763860406.4825704
[2025-11-23 20:46:39] 2025-11-23 21:29:26,264 | INFO     | mean y: 4643966.128517429
[2025-11-23 20:46:39] 2025-11-23 21:29:26,264 | INFO     | intersect: -84505213959.12502
[2025-11-23 20:46:39] 2025-11-23 21:29:26,267 | INFO     | chi2: 339.3448704318041
[2025-11-23 20:46:39] 2025-11-23 21:29:26,267 | INFO     | current chi2=339.3448704318041 (change=-2.852890414887598 %)
[2025-11-23 20:46:39] 2025-11-23 21:29:26,267 | INFO     | right removable region: 2380
[2025-11-23 20:46:39] 2025-11-23 21:29:26,270 | INFO     | sum of square deviations: 4185414726700.498
[2025-11-23 20:46:39] 2025-11-23 21:29:26,416 | INFO     | sum of deviations: 197542024411217.03
[2025-11-23 20:46:39] 2025-11-23 21:29:26,416 | INFO     | mean x: 1763860711.4821503
[2025-11-23 20:46:39] 2025-11-23 21:29:26,416 | INFO     | mean y: 4644601.59848803
[2025-11-23 20:46:39] 2025-11-23 21:29:26,416 | INFO     | intersect: -83245556030.31781
[2025-11-23 20:46:39] 2025-11-23 21:29:26,419 | INFO     | chi2: 324.0642266541406
[2025-11-23 20:46:39] 2025-11-23 21:29:26,420 | INFO     | current chi2=324.0642266541406 (change=1.7785583467603363 %)
[2025-11-23 20:46:39] 2025-11-23 21:29:26,420 | INFO     | left removable region: 10
[2025-11-23 20:46:39] 2025-11-23 21:29:26,423 | INFO     | sum of square deviations: 4127672156664.8784
[2025-11-23 20:46:39] 2025-11-23 21:29:26,603 | INFO     | sum of deviations: 197965902458098.5
[2025-11-23 20:46:39] 2025-11-23 21:29:26,604 | INFO     | mean x: 1763860681.007173
[2025-11-23 20:46:39] 2025-11-23 21:29:26,604 | INFO     | mean y: 4662494.775105486
[2025-11-23 20:46:39] 2025-11-23 21:29:26,604 | INFO     | intersect: -84591269127.8756
[2025-11-23 20:46:39] 2025-11-23 21:29:26,607 | INFO     | chi2: 334.08049442898374
[2025-11-23 20:46:39] 2025-11-23 21:29:26,607 | INFO     | current memory leak: 47.96 B/s (using 2370 data points, chi2=334.08)
[2025-11-23 20:46:39] 2025-11-23 21:29:26,609 | INFO     | could have reported an average CPU frequency of 2600 MHz (81 samples)
[2025-11-23 20:46:39] 2025-11-23 21:29:26,610 | INFO     | ..............................
[2025-11-23 20:46:39] 2025-11-23 21:29:26,610 | INFO     | . Timing measurements:
[2025-11-23 20:46:39] 2025-11-23 21:29:26,610 | INFO     | . get job = 0 s
[2025-11-23 20:46:39] 2025-11-23 21:29:26,610 | INFO     | . initial setup = 5 s
[2025-11-23 20:46:39] 2025-11-23 21:29:26,610 | INFO     | . payload setup = 27 s
[2025-11-23 20:46:39] 2025-11-23 21:29:26,610 | INFO     | . stage-in = 0 s
[2025-11-23 20:46:39] 2025-11-23 21:29:26,610 | INFO     | . payload execution = 145552 s
[2025-11-23 20:46:39] 2025-11-23 21:29:26,611 | INFO     | . stage-out = 6 s
[2025-11-23 20:46:39] 2025-11-23 21:29:26,611 | INFO     | . log creation = 1 s
[2025-11-23 20:46:39] 2025-11-23 21:29:26,611 | INFO     | ..............................
[2025-11-23 20:46:39] 2025-11-23 21:29:26,717 | INFO     | 
[2025-11-23 20:46:39] 2025-11-23 21:29:26,720 | INFO     | job summary report
[2025-11-23 20:46:39] 2025-11-23 21:29:26,720 | INFO     | --------------------------------------------------
[2025-11-23 20:46:39] 2025-11-23 21:29:26,720 | INFO     | PanDA job id: 6893848485
[2025-11-23 20:46:39] 2025-11-23 21:29:26,720 | INFO     | task id: 47523449
[2025-11-23 20:46:39] 2025-11-23 21:29:26,720 | INFO     | errors: (none)
[2025-11-23 20:46:39] 2025-11-23 21:29:26,720 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 20:46:39] 2025-11-23 21:29:26,721 | INFO     | pilot state: finished 
[2025-11-23 20:46:39] 2025-11-23 21:29:26,721 | INFO     | transexitcode: 0
[2025-11-23 20:46:39] 2025-11-23 21:29:26,721 | INFO     | exeerrorcode: 0
[2025-11-23 20:46:39] 2025-11-23 21:29:26,721 | INFO     | exeerrordiag: 
[2025-11-23 20:46:39] 2025-11-23 21:29:26,721 | INFO     | exitcode: 0
[2025-11-23 20:46:39] 2025-11-23 21:29:26,721 | INFO     | exitmsg: OK
[2025-11-23 20:46:39] 2025-11-23 21:29:26,721 | INFO     | cpuconsumptiontime: 296335 s
[2025-11-23 20:46:39] 2025-11-23 21:29:26,721 | INFO     | nevents: 1000
[2025-11-23 20:46:39] 2025-11-23 21:29:26,721 | INFO     | neventsw: 0
[2025-11-23 20:46:39] 2025-11-23 21:29:26,721 | INFO     | pid: 3494821
[2025-11-23 20:46:39] 2025-11-23 21:29:26,721 | INFO     | pgrp: 3494821
[2025-11-23 20:46:39] 2025-11-23 21:29:26,722 | INFO     | corecount: 9
[2025-11-23 20:46:39] 2025-11-23 21:29:26,722 | INFO     | event service: False
[2025-11-23 20:46:39] 2025-11-23 21:29:26,722 | INFO     | sizes: {0: 2298580, 1: 2298664, 2: 2298835, 3: 2298863, 13: 2298891, 24: 2299365, 145581: 2388437, 145588: 2397431, 145591: 2397487, 145608: 2397733}
[2025-11-23 20:46:39] 2025-11-23 21:29:26,722 | INFO     | --------------------------------------------------
[2025-11-23 20:46:39] 2025-11-23 21:29:26,722 | INFO     | 
[2025-11-23 20:46:39] 2025-11-23 21:29:26,722 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-23 20:46:39] 2025-11-23 21:29:26,743 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,743 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,743 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,744 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,744 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,744 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,744 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,744 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,744 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,744 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,744 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,744 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,744 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,745 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,745 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,745 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,745 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,745 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 20:46:39] 2025-11-23 21:29:26,745 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,745 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 20:46:39] 2025-11-23 21:29:26,745 | INFO     | job 6893848485 has completed (purged errors)
[2025-11-23 20:46:39] 2025-11-23 21:29:26,746 | INFO     | overall cleanup function is called
[2025-11-23 20:46:39] 2025-11-23 21:29:27,763 | INFO     | --- collectZombieJob: --- 10, [3494821]
[2025-11-23 20:46:39] 2025-11-23 21:29:27,763 | INFO     | zombie collector waiting for pid 3494821
[2025-11-23 20:46:39] 2025-11-23 21:29:27,763 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 20:46:39] 2025-11-23 21:29:27,763 | INFO     | collected zombie processes
[2025-11-23 20:46:39] 2025-11-23 21:29:27,763 | INFO     | will attempt to kill all subprocesses of pid=3494821
[2025-11-23 20:46:39] 2025-11-23 21:29:28,869 | INFO     | process IDs to be killed: [3494821] (in reverse order)
[2025-11-23 20:46:39] 2025-11-23 21:29:29,054 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 20:46:39] 2025-11-23 21:29:29,054 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 20:46:39] 2025-11-23 21:29:29,082 | INFO     | did not find any defunct processes belonging to 3494821
[2025-11-23 20:46:39] 2025-11-23 21:29:29,146 | INFO     | did not find any defunct processes belonging to 3494821
[2025-11-23 20:46:39] 2025-11-23 21:29:29,148 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 20:46:39] 2025-11-23 21:29:29,148 | INFO     | ready for new job
[2025-11-23 20:46:39] 2025-11-23 21:29:29,148 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 20:46:39] 2025-11-23 21:29:29,158 | INFO     | ***************************************
[2025-11-23 20:46:39] 2025-11-23 21:29:29,158 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 20:46:39] 2025-11-23 21:29:29,158 | INFO     | ***************************************
[2025-11-23 20:46:39] 2025-11-23 21:29:29,158 | INFO     | 
[2025-11-23 20:46:39] 2025-11-23 21:29:29,164 | INFO     | architecture information:
[2025-11-23 20:46:39] 2025-11-23 21:29:29,165 | INFO     | executing command: cat /etc/os-release
[2025-11-23 20:46:39] 2025-11-23 21:29:29,386 | INFO     | cat /etc/os-release:
[2025-11-23 20:46:39] NAME="CentOS Linux"
[2025-11-23 20:46:39] VERSION="7 (Core)"
[2025-11-23 20:46:39] ID="centos"
[2025-11-23 20:46:39] ID_LIKE="rhel fedora"
[2025-11-23 20:46:39] VERSION_ID="7"
[2025-11-23 20:46:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 20:46:39] ANSI_COLOR="0;31"
[2025-11-23 20:46:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 20:46:39] HOME_URL="https://www.centos.org/"
[2025-11-23 20:46:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 20:46:39] 
[2025-11-23 20:46:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 20:46:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 20:46:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 20:46:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 20:46:39] 
[2025-11-23 20:46:39] 2025-11-23 21:29:29,387 | INFO     | ***************************************
[2025-11-23 20:46:39] 2025-11-23 21:29:29,890 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-23 20:46:39] 2025-11-23 21:29:29,908 | INFO     | sufficient remaining disk space (71341965312 B)
[2025-11-23 20:46:39] 2025-11-23 21:29:29,908 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 20:46:39] 2025-11-23 21:29:29,908 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 20:46:39] 2025-11-23 21:29:29,908 | INFO     | update_server=False
[2025-11-23 20:46:39] 2025-11-23 21:29:29,909 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 20:46:39] 2025-11-23 21:29:29,909 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 20:46:39] 2025-11-23 21:29:30,133 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 20:46:39] 2025-11-23 21:29:30,133 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 20:46:39] 2025-11-23 21:29:30,133 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 20:46:39] 2025-11-23 21:29:30,133 | INFO     | will abort loop
[2025-11-23 20:46:39] 2025-11-23 21:29:30,239 | INFO     | all job control threads have been joined
[2025-11-23 20:46:39] 2025-11-23 21:29:30,513 | INFO     | all data control threads have been joined
[2025-11-23 20:46:39] 2025-11-23 21:29:30,737 | INFO     | all payload control threads have been joined
[2025-11-23 20:46:39] 2025-11-23 21:29:30,969 | INFO     | [job] retrieve thread has finished
[2025-11-23 20:46:39] 2025-11-23 21:29:31,139 | INFO     | [job] job monitor thread has finished
[2025-11-23 20:46:39] 2025-11-23 21:29:31,249 | INFO     | [job] control thread has finished
[2025-11-23 20:46:39] 2025-11-23 21:29:31,335 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 20:46:39] 2025-11-23 21:29:31,530 | INFO     | [data] control thread has finished
[2025-11-23 20:46:39] 2025-11-23 21:29:31,665 | INFO     | [payload] failed_post thread has finished
[2025-11-23 20:46:39] 2025-11-23 21:29:31,672 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 20:46:39] 2025-11-23 21:29:31,699 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 20:46:39] 2025-11-23 21:29:31,743 | INFO     | [payload] control thread has finished
[2025-11-23 20:46:39] 2025-11-23 21:29:31,762 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 20:46:39] 2025-11-23 21:29:31,919 | INFO     | [data] copytool_out thread has finished
[2025-11-23 20:46:39] 2025-11-23 21:29:31,974 | INFO     | [data] copytool_in thread has finished
[2025-11-23 20:46:39] 2025-11-23 21:29:32,069 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 20:46:39] 2025-11-23 21:29:32,329 | INFO     | [job] validate thread has finished
[2025-11-23 20:46:39] 2025-11-23 21:29:32,367 | INFO     | [payload] validate_post thread has finished
[2025-11-23 20:46:39] 2025-11-23 21:29:32,768 | INFO     | [job] queue monitor thread has finished
[2025-11-23 20:46:39] 2025-11-23 21:29:33,260 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 20:46:39] 2025-11-23 21:29:37,269 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 20:46:39] 2025-11-23 21:29:52,034 | INFO     | [monitor] cgroup control has ended
[2025-11-23 20:46:39] 2025-11-23 21:29:52,138 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139993723168576)>', '<ExcThread(monitor, started 139993225873152)>']
[2025-11-23 20:46:39] 2025-11-23 21:29:57,171 | INFO     | all workflow threads have been joined
[2025-11-23 20:46:39] 2025-11-23 21:29:57,171 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 20:46:39] 2025-11-23 21:29:57,177 | INFO     | traces error code: 0
[2025-11-23 20:46:39] 2025-11-23 21:29:57,178 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 20:46:39] 2025-11-23 21:29:59,396 | INFO     | PID=3458292 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 20:46:39] 2025-11-23 21:29:59,397 | INFO     | .. there are 38 such processes running
[2025-11-23 20:46:39] 2025-11-23 21:29:59,398 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 20:46:39] 2025-11-23 21:29:59,398 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 20:46:39] 2025-11-23 21:29:59,398 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 20:46:39] 2025-11-23 21:29:59,398 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 20:46:39] 2025-11-23 21:29:59,398 | INFO     | [monitor] control thread has ended
[2025-11-23 20:46:39] 2025-11-23 21:29:59,943 [wrapper] ==== pilot stdout END ====
[2025-11-23 20:46:39] 2025-11-23 21:29:59,965 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 20:46:39] 2025-11-23 21:29:59,968 [wrapper] pilotpid: 3458292
[2025-11-23 20:46:39] 2025-11-23 21:29:59,970 [wrapper] Pilot exit status: 0
[2025-11-23 20:46:39] 2025-11-23 21:30:00,072 [wrapper] pandaids: 6893848485
[2025-11-23 20:46:39] 2025-11-23 21:30:00,366 [wrapper] cleanup supervisor_pilot 3428843 3458294
[2025-11-23 20:46:39] 2025-11-23 21:30:00,370 [wrapper] Test setup, not cleaning
[2025-11-23 20:46:39] 2025-11-23 21:30:00,417 [wrapper] apfmon messages muted
[2025-11-23 20:46:39] 2025-11-23 21:30:00,440 [wrapper] ==== wrapper stdout END ====
[2025-11-23 20:46:39] 2025-11-23 21:30:00,469 [wrapper] ==== wrapper stderr END ====
[2025-11-23 20:46:39]  *** Error codes and diagnostics ***
[2025-11-23 20:46:39]     "exeErrorCode": 0,
[2025-11-23 20:46:39]     "exeErrorDiag": "",
[2025-11-23 20:46:39]     "pilotErrorCode": 0,
[2025-11-23 20:46:39]     "pilotErrorDiag": "",
[2025-11-23 20:46:39]  *** Listing of results directory ***
[2025-11-23 20:46:39] total 1326424
[2025-11-23 20:46:39] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-23 20:46:39] -rwx------. 1 boincer umatlas     36292 Nov 20 05:38 runpilot2-wrapper.sh
[2025-11-23 20:46:39] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:38 queuedata.json
[2025-11-23 20:46:39] -rw-r--r--. 1 boincer umatlas       100 Nov 22 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 20:46:39] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 00:01 run_atlas
[2025-11-23 20:46:39] -rw-r--r--. 1 boincer umatlas       105 Nov 22 00:01 job.xml
[2025-11-23 20:46:39] -rw-r--r--. 2 boincer umatlas 409188341 Nov 22 00:01 EVNT.47493127._000275.pool.root.1
[2025-11-23 20:46:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:01 start_atlas.sh
[2025-11-23 20:46:39] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 00:01 shared
[2025-11-23 20:46:39] -rw-r--r--. 2 boincer umatlas    590099 Nov 22 00:01 input.tar.gz
[2025-11-23 20:46:39] -rw-r--r--. 1 boincer umatlas         0 Nov 22 00:01 boinc_lockfile
[2025-11-23 20:46:39] -rw-r--r--. 1 boincer umatlas      2786 Nov 22 00:01 pandaJob.out
[2025-11-23 20:46:39] -rw-------. 1 boincer umatlas        57 Nov 22 00:01 setup.sh.local
[2025-11-23 20:46:39] -rw-------. 1 boincer umatlas    989752 Nov 22 00:01 agis_schedconf.cvmfs.json
[2025-11-23 20:46:39] drwx------. 5 boincer umatlas      4096 Nov 22 00:01 pilot3
[2025-11-23 20:46:39] -rw-r--r--. 1 boincer umatlas       533 Nov 23 16:19 boinc_task_state.xml
[2025-11-23 20:46:39] -rw-------. 1 boincer umatlas 906420005 Nov 23 16:28 HITS.47523449._002743.pool.root.1
[2025-11-23 20:46:39] -rw-------. 1 boincer umatlas      1086 Nov 23 16:28 memory_monitor_summary.json
[2025-11-23 20:46:39] -rw-------. 1 boincer umatlas   1526164 Nov 23 16:29 agis_ddmendpoints.agis.ALL.json
[2025-11-23 20:46:39] -rw-------. 1 boincer umatlas   3110595 Nov 23 16:29 log.47523449._002743.job.log.tgz.1
[2025-11-23 20:46:39] -rw-------. 1 boincer umatlas      8698 Nov 23 16:29 heartbeat.json
[2025-11-23 20:46:39] -rw-------. 1 boincer umatlas       823 Nov 23 16:29 pilotlog.txt
[2025-11-23 20:46:39] -rw-------. 1 boincer umatlas        95 Nov 23 16:29 pilot_heartbeat.json
[2025-11-23 20:46:39] -rw-------. 1 boincer umatlas  16264756 Nov 23 16:30 log.47523449._002743.job.log.1
[2025-11-23 20:46:39] -rw-------. 1 boincer umatlas       353 Nov 23 16:30 output.list
[2025-11-23 20:46:39] -rw-r--r--. 1 boincer umatlas       620 Nov 23 16:30 runtime_log
[2025-11-23 20:46:39] -rw-------. 1 boincer umatlas  19394560 Nov 23 16:30 result.tar.gz
[2025-11-23 20:46:39] -rw-------. 1 boincer umatlas       668 Nov 23 16:30 TX7KDmmEHg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYTGKDmoy5zwm.diag
[2025-11-23 20:46:39] -rw-r--r--. 1 boincer umatlas      9334 Nov 23 16:30 runtime_log.err
[2025-11-23 20:46:39] -rw-r--r--. 1 boincer umatlas      6661 Nov 23 20:46 init_data.xml
[2025-11-23 20:46:39] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 20:46 boinc_mmap_file
[2025-11-23 20:46:39] -rw-r--r--. 1 boincer umatlas        29 Nov 23 20:46 wrapper_checkpoint.txt
[2025-11-23 20:46:39] -rw-r--r--. 1 boincer umatlas      2141 Nov 23 20:46 stderr.txt
[2025-11-23 20:46:39] HITS file was successfully produced:
[2025-11-23 20:46:39] -rw-------. 1 boincer umatlas 906420005 Nov 23 16:28 shared/HITS.pool.root.1
[2025-11-23 20:46:39]  *** Contents of shared directory: ***
[2025-11-23 20:46:39] total 1304320
[2025-11-23 20:46:39] -rw-r--r--. 2 boincer umatlas 409188341 Nov 22 00:01 ATLAS.root_0
[2025-11-23 20:46:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:01 start_atlas.sh
[2025-11-23 20:46:39] -rw-r--r--. 2 boincer umatlas    590099 Nov 22 00:01 input.tar.gz
[2025-11-23 20:46:39] -rw-------. 1 boincer umatlas 906420005 Nov 23 16:28 HITS.pool.root.1
[2025-11-23 20:46:39] -rw-------. 1 boincer umatlas  19394560 Nov 23 16:30 result.tar.gz
20:46:41 (3440413): run_atlas exited; CPU time 300897.387351
20:46:41 (3440413): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN