Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:03 (335045): wrapper (7.7.26015): starting
00:03:03 (335045): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 00:03:03] Arguments: --nthreads 8
[2025-11-21 00:03:03] Threads: 8
[2025-11-21 00:03:03] Checking for CVMFS
[2025-11-21 00:03:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:03:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:03:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:03:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:03:06] 2.13.3.0 14328 22383 194384 153108 0 620 39947115 40960001 45542 16776704 0 283156060 99.727 193940204 50644 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 00:03:06] CVMFS is ok
[2025-11-21 00:03:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:03:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:03:06] Further information can be found at the LHC@home message board.
[2025-11-21 00:03:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:03:06] Checking for apptainer binary...
[2025-11-21 00:03:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:03:06] Running /usr/bin/apptainer --version
[2025-11-21 00:03:06] apptainer version 1.4.4-1.el9
[2025-11-21 00:03:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:03:06] c8-16-2.aglt2.org
[2025-11-21 00:03:06] apptainer works
[2025-11-21 00:03:06] Set ATHENA_PROC_NUMBER=8
[2025-11-21 00:03:06] Set ATHENA_CORE_NUMBER=8
[2025-11-21 00:03:06] Starting ATLAS job with PandaID=6893847151
[2025-11-21 00:03:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 08:08:52]  *** The last 200 lines of the pilot log: ***
[2025-11-21 08:08:52] 2025-11-21 13:07:47,938 | INFO     | .. there are 54 such processes running
[2025-11-21 08:08:52] 2025-11-21 13:07:47,939 | INFO     | monitor loop #1780: job 0:6893847151 is in state 'finished'
[2025-11-21 08:08:52] 2025-11-21 13:07:47,939 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 08:08:52] 2025-11-21 13:07:48,939 | INFO     | time since job start (28972s) is within the limit (172800.0s)
[2025-11-21 08:08:52] 2025-11-21 13:07:50,444 | INFO     | monitor loop #1781: job 0:6893847151 is in state 'finished'
[2025-11-21 08:08:52] 2025-11-21 13:07:50,444 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 08:08:52] 2025-11-21 13:07:50,950 | INFO     | time since job start (28974s) is within the limit (172800.0s)
[2025-11-21 08:08:52] 2025-11-21 13:07:52,952 | INFO     | monitor loop #1782: job 0:6893847151 is in state 'finished'
[2025-11-21 08:08:52] 2025-11-21 13:07:52,952 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 08:08:52] 2025-11-21 13:07:52,957 | INFO     | time since job start (28976s) is within the limit (172800.0s)
[2025-11-21 08:08:52] 2025-11-21 13:07:54,963 | INFO     | time since job start (28978s) is within the limit (172800.0s)
[2025-11-21 08:08:52] 2025-11-21 13:07:55,458 | INFO     | monitor loop #1783: job 0:6893847151 is in state 'finished'
[2025-11-21 08:08:52] 2025-11-21 13:07:55,458 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 08:08:52] 2025-11-21 13:07:56,970 | INFO     | time since job start (28980s) is within the limit (172800.0s)
[2025-11-21 08:08:52] 2025-11-21 13:07:57,964 | INFO     | monitor loop #1784: job 0:6893847151 is in state 'finished'
[2025-11-21 08:08:52] 2025-11-21 13:07:57,964 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 08:08:52] 2025-11-21 13:07:58,977 | INFO     | time since job start (28982s) is within the limit (172800.0s)
[2025-11-21 08:08:52] 2025-11-21 13:07:59,641 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 08:08:52] 2025-11-21 13:07:59,650 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.026359374999
[2025-11-21 08:08:52] 2025-11-21 13:07:59,675 | INFO     | using path: /tmp/boinchome/slots/15/PanDA_Pilot-6893847151/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 08:08:52] 2025-11-21 13:07:59,676 | INFO     | extracted standard info from prmon json
[2025-11-21 08:08:52] 2025-11-21 13:07:59,676 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 08:08:52] 2025-11-21 13:07:59,676 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 08:08:52] 2025-11-21 13:07:59,685 | INFO     | fitting pss+swap vs Time
[2025-11-21 08:08:52] 2025-11-21 13:07:59,709 | INFO     | sum of square deviations: 32192689991.082996
[2025-11-21 08:08:52] 2025-11-21 13:07:59,712 | INFO     | sum of deviations: 416502179962.26373
[2025-11-21 08:08:52] 2025-11-21 13:07:59,712 | INFO     | mean x: 1763716070.5297873
[2025-11-21 08:08:52] 2025-11-21 13:07:59,712 | INFO     | mean y: 2718216.8382978723
[2025-11-21 08:08:52] 2025-11-21 13:07:59,712 | INFO     | intersect: -22815865393.714516
[2025-11-21 08:08:52] 2025-11-21 13:07:59,713 | INFO     | chi2: 21.449862122170906
[2025-11-21 08:08:52] 2025-11-21 13:07:59,715 | INFO     | sum of square deviations: 31176269708.223534
[2025-11-21 08:08:52] 2025-11-21 13:07:59,718 | INFO     | sum of deviations: 566279290383.3159
[2025-11-21 08:08:52] 2025-11-21 13:07:59,718 | INFO     | mean x: 1763715918.0408602
[2025-11-21 08:08:52] 2025-11-21 13:07:59,718 | INFO     | mean y: 2740684.5096774194
[2025-11-21 08:08:52] 2025-11-21 13:07:59,718 | INFO     | intersect: -32033029080.546265
[2025-11-21 08:08:52] 2025-11-21 13:07:59,718 | INFO     | chi2: 17.93484849879527
[2025-11-21 08:08:52] 2025-11-21 13:07:59,719 | INFO     | current chi2=17.93484849879527 (change=16.387115233446956 %)
[2025-11-21 08:08:52] 2025-11-21 13:07:59,719 | INFO     | right removable region: 464
[2025-11-21 08:08:52] 2025-11-21 13:07:59,719 | INFO     | sum of square deviations: 31175974468.223522
[2025-11-21 08:08:52] 2025-11-21 13:07:59,730 | INFO     | sum of deviations: 234174679629.65765
[2025-11-21 08:08:52] 2025-11-21 13:07:59,730 | INFO     | mean x: 1763716223.0408602
[2025-11-21 08:08:52] 2025-11-21 13:07:59,730 | INFO     | mean y: 2745560.7548387097
[2025-11-21 08:08:52] 2025-11-21 13:07:59,730 | INFO     | intersect: -13245202210.988314
[2025-11-21 08:08:52] 2025-11-21 13:07:59,730 | INFO     | chi2: 16.950474056430657
[2025-11-21 08:08:52] 2025-11-21 13:07:59,730 | INFO     | current chi2=16.950474056430657 (change=20.976302971614967 %)
[2025-11-21 08:08:52] 2025-11-21 13:07:59,730 | INFO     | left removable region: 10
[2025-11-21 08:08:52] 2025-11-21 13:07:59,730 | INFO     | sum of square deviations: 29015358817.51755
[2025-11-21 08:08:52] 2025-11-21 13:07:59,733 | INFO     | sum of deviations: 253429678278.85052
[2025-11-21 08:08:52] 2025-11-21 13:07:59,733 | INFO     | mean x: 1763716192.5660794
[2025-11-21 08:08:52] 2025-11-21 13:07:59,733 | INFO     | mean y: 2799042.9383259914
[2025-11-21 08:08:52] 2025-11-21 13:07:59,733 | INFO     | intersect: -15402077735.196325
[2025-11-21 08:08:52] 2025-11-21 13:07:59,734 | INFO     | chi2: 9.154347679724989
[2025-11-21 08:08:52] 2025-11-21 13:07:59,734 | INFO     | current memory leak: 8.73 B/s (using 454 data points, chi2=9.15)
[2025-11-21 08:08:52] 2025-11-21 13:07:59,734 | INFO     | could have reported an average CPU frequency of 3799 MHz (19 samples)
[2025-11-21 08:08:52] 2025-11-21 13:07:59,734 | INFO     | ..............................
[2025-11-21 08:08:52] 2025-11-21 13:07:59,735 | INFO     | . Timing measurements:
[2025-11-21 08:08:52] 2025-11-21 13:07:59,735 | INFO     | . get job = 0 s
[2025-11-21 08:08:52] 2025-11-21 13:07:59,735 | INFO     | . initial setup = 4 s
[2025-11-21 08:08:52] 2025-11-21 13:07:59,735 | INFO     | . payload setup = 81 s
[2025-11-21 08:08:52] 2025-11-21 13:07:59,735 | INFO     | . stage-in = 0 s
[2025-11-21 08:08:52] 2025-11-21 13:07:59,735 | INFO     | . payload execution = 28715 s
[2025-11-21 08:08:52] 2025-11-21 13:07:59,735 | INFO     | . stage-out = 4 s
[2025-11-21 08:08:52] 2025-11-21 13:07:59,735 | INFO     | . log creation = 1 s
[2025-11-21 08:08:52] 2025-11-21 13:07:59,735 | INFO     | ..............................
[2025-11-21 08:08:52] 2025-11-21 13:07:59,868 | INFO     | 
[2025-11-21 08:08:52] 2025-11-21 13:07:59,868 | INFO     | job summary report
[2025-11-21 08:08:52] 2025-11-21 13:07:59,868 | INFO     | --------------------------------------------------
[2025-11-21 08:08:52] 2025-11-21 13:07:59,868 | INFO     | PanDA job id: 6893847151
[2025-11-21 08:08:52] 2025-11-21 13:07:59,868 | INFO     | task id: 47523449
[2025-11-21 08:08:52] 2025-11-21 13:07:59,868 | INFO     | errors: (none)
[2025-11-21 08:08:52] 2025-11-21 13:07:59,868 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 08:08:52] 2025-11-21 13:07:59,869 | INFO     | pilot state: finished 
[2025-11-21 08:08:52] 2025-11-21 13:07:59,869 | INFO     | transexitcode: 0
[2025-11-21 08:08:52] 2025-11-21 13:07:59,869 | INFO     | exeerrorcode: 0
[2025-11-21 08:08:52] 2025-11-21 13:07:59,869 | INFO     | exeerrordiag: 
[2025-11-21 08:08:52] 2025-11-21 13:07:59,869 | INFO     | exitcode: 0
[2025-11-21 08:08:52] 2025-11-21 13:07:59,869 | INFO     | exitmsg: OK
[2025-11-21 08:08:52] 2025-11-21 13:07:59,869 | INFO     | cpuconsumptiontime: 132133 s
[2025-11-21 08:08:52] 2025-11-21 13:07:59,869 | INFO     | nevents: 1000
[2025-11-21 08:08:52] 2025-11-21 13:07:59,869 | INFO     | neventsw: 0
[2025-11-21 08:08:52] 2025-11-21 13:07:59,869 | INFO     | pid: 392969
[2025-11-21 08:08:52] 2025-11-21 13:07:59,869 | INFO     | pgrp: 392969
[2025-11-21 08:08:52] 2025-11-21 13:07:59,869 | INFO     | corecount: 8
[2025-11-21 08:08:52] 2025-11-21 13:07:59,869 | INFO     | event service: False
[2025-11-21 08:08:52] 2025-11-21 13:07:59,869 | INFO     | sizes: {0: 2298637, 1: 2298836, 12: 2298836, 23: 2298864, 34: 2298892, 45: 2298920, 50: 2299338, 55: 2299366, 28802: 2337880, 28807: 2346932, 28872: 2347150}
[2025-11-21 08:08:52] 2025-11-21 13:07:59,869 | INFO     | --------------------------------------------------
[2025-11-21 08:08:52] 2025-11-21 13:07:59,869 | INFO     | 
[2025-11-21 08:08:52] 2025-11-21 13:07:59,869 | INFO     | executing command: ls -lF /tmp/boinchome/slots/15
[2025-11-21 08:08:52] 2025-11-21 13:08:00,175 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | job 6893847151 has completed (purged errors)
[2025-11-21 08:08:52] 2025-11-21 13:08:00,176 | INFO     | overall cleanup function is called
[2025-11-21 08:08:52] 2025-11-21 13:08:01,199 | INFO     | --- collectZombieJob: --- 10, [392969]
[2025-11-21 08:08:52] 2025-11-21 13:08:01,199 | INFO     | zombie collector waiting for pid 392969
[2025-11-21 08:08:52] 2025-11-21 13:08:01,199 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 08:08:52] 2025-11-21 13:08:01,199 | INFO     | collected zombie processes
[2025-11-21 08:08:52] 2025-11-21 13:08:01,199 | INFO     | will attempt to kill all subprocesses of pid=392969
[2025-11-21 08:08:52] 2025-11-21 13:08:02,336 | INFO     | process IDs to be killed: [392969] (in reverse order)
[2025-11-21 08:08:52] 2025-11-21 13:08:03,073 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 08:08:52] 2025-11-21 13:08:03,073 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 08:08:52] 2025-11-21 13:08:03,119 | INFO     | did not find any defunct processes belonging to 392969
[2025-11-21 08:08:52] 2025-11-21 13:08:03,166 | INFO     | did not find any defunct processes belonging to 392969
[2025-11-21 08:08:52] 2025-11-21 13:08:03,199 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 08:08:52] 2025-11-21 13:08:03,199 | INFO     | ready for new job
[2025-11-21 08:08:52] 2025-11-21 13:08:03,199 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 08:08:52] 2025-11-21 13:08:03,202 | INFO     | ***************************************
[2025-11-21 08:08:52] 2025-11-21 13:08:03,202 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 08:08:52] 2025-11-21 13:08:03,202 | INFO     | ***************************************
[2025-11-21 08:08:52] 2025-11-21 13:08:03,202 | INFO     | 
[2025-11-21 08:08:52] 2025-11-21 13:08:03,210 | INFO     | architecture information:
[2025-11-21 08:08:52] 2025-11-21 13:08:03,214 | INFO     | executing command: cat /etc/os-release
[2025-11-21 08:08:52] 2025-11-21 13:08:03,375 | INFO     | cat /etc/os-release:
[2025-11-21 08:08:52] NAME="CentOS Linux"
[2025-11-21 08:08:52] VERSION="7 (Core)"
[2025-11-21 08:08:52] ID="centos"
[2025-11-21 08:08:52] ID_LIKE="rhel fedora"
[2025-11-21 08:08:52] VERSION_ID="7"
[2025-11-21 08:08:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 08:08:52] ANSI_COLOR="0;31"
[2025-11-21 08:08:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 08:08:52] HOME_URL="https://www.centos.org/"
[2025-11-21 08:08:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 08:08:52] 
[2025-11-21 08:08:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 08:08:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 08:08:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 08:08:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 08:08:52] 
[2025-11-21 08:08:52] 2025-11-21 13:08:03,375 | INFO     | ***************************************
[2025-11-21 08:08:52] 2025-11-21 13:08:03,878 | INFO     | executing command: df -mP /tmp/boinchome/slots/15
[2025-11-21 08:08:52] 2025-11-21 13:08:04,022 | INFO     | sufficient remaining disk space (153705512960 B)
[2025-11-21 08:08:52] 2025-11-21 13:08:04,022 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 08:08:52] 2025-11-21 13:08:04,022 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 08:08:52] 2025-11-21 13:08:04,022 | INFO     | update_server=False
[2025-11-21 08:08:52] 2025-11-21 13:08:04,022 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 08:08:52] 2025-11-21 13:08:04,022 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 08:08:52] 2025-11-21 13:08:04,022 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 08:08:52] 2025-11-21 13:08:04,023 | INFO     | aborting loop
[2025-11-21 08:08:52] 2025-11-21 13:08:04,389 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 08:08:52] 2025-11-21 13:08:04,836 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 08:08:52] 2025-11-21 13:08:05,025 | INFO     | all job control threads have been joined
[2025-11-21 08:08:52] 2025-11-21 13:08:05,028 | INFO     | [job] retrieve thread has finished
[2025-11-21 08:08:52] 2025-11-21 13:08:05,029 | INFO     | [job] job monitor thread has finished
[2025-11-21 08:08:52] 2025-11-21 13:08:05,035 | INFO     | all data control threads have been joined
[2025-11-21 08:08:52] 2025-11-21 13:08:05,143 | INFO     | [payload] validate_post thread has finished
[2025-11-21 08:08:52] 2025-11-21 13:08:05,218 | INFO     | all payload control threads have been joined
[2025-11-21 08:08:52] 2025-11-21 13:08:05,290 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 08:08:52] 2025-11-21 13:08:05,291 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 08:08:52] 2025-11-21 13:08:05,411 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 08:08:52] 2025-11-21 13:08:05,585 | INFO     | [payload] failed_post thread has finished
[2025-11-21 08:08:52] 2025-11-21 13:08:05,844 | INFO     | [job] queue monitor thread has finished
[2025-11-21 08:08:52] 2025-11-21 13:08:06,029 | INFO     | [data] copytool_out thread has finished
[2025-11-21 08:08:52] 2025-11-21 13:08:06,031 | INFO     | [job] control thread has finished
[2025-11-21 08:08:52] 2025-11-21 13:08:06,036 | INFO     | [data] copytool_in thread has finished
[2025-11-21 08:08:52] 2025-11-21 13:08:06,040 | INFO     | [data] control thread has finished
[2025-11-21 08:08:52] 2025-11-21 13:08:06,226 | INFO     | [payload] control thread has finished
[2025-11-21 08:08:52] 2025-11-21 13:08:06,277 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 08:08:52] 2025-11-21 13:08:06,414 | INFO     | [job] validate thread has finished
[2025-11-21 08:08:52] 2025-11-21 13:08:08,398 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 08:08:52] 2025-11-21 13:08:34,209 | INFO     | PID=359140 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 08:08:52] 2025-11-21 13:08:34,209 | INFO     | .. there are 54 such processes running
[2025-11-21 08:08:52] 2025-11-21 13:08:34,210 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 08:08:52] 2025-11-21 13:08:34,210 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 08:08:52] 2025-11-21 13:08:34,210 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 08:08:52] 2025-11-21 13:08:45,580 | INFO     | [monitor] cgroup control has ended
[2025-11-21 08:08:52] 2025-11-21 13:08:45,887 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140302543173440)>', '<ExcThread(monitor, started 140302169904896)>']
[2025-11-21 08:08:52] 2025-11-21 13:08:46,285 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 08:08:52] 2025-11-21 13:08:46,285 | INFO     | [monitor] control thread has ended
[2025-11-21 08:08:52] 2025-11-21 13:08:50,914 | INFO     | all workflow threads have been joined
[2025-11-21 08:08:52] 2025-11-21 13:08:50,914 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 08:08:52] 2025-11-21 13:08:50,914 | INFO     | traces error code: 0
[2025-11-21 08:08:52] 2025-11-21 13:08:50,915 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 08:08:52] 2025-11-21 13:08:51,230 [wrapper] ==== pilot stdout END ====
[2025-11-21 08:08:52] 2025-11-21 13:08:51,252 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 08:08:52] 2025-11-21 13:08:51,288 [wrapper] pilotpid: 359140
[2025-11-21 08:08:52] 2025-11-21 13:08:51,301 [wrapper] Pilot exit status: 0
[2025-11-21 08:08:52] 2025-11-21 13:08:51,437 [wrapper] pandaids: 6893847151
[2025-11-21 08:08:52] 2025-11-21 13:08:51,635 [wrapper] cleanup supervisor_pilot 3432472 359141
[2025-11-21 08:08:52] 2025-11-21 13:08:51,667 [wrapper] Test setup, not cleaning
[2025-11-21 08:08:52] 2025-11-21 13:08:51,695 [wrapper] apfmon messages muted
[2025-11-21 08:08:52] 2025-11-21 13:08:51,724 [wrapper] ==== wrapper stdout END ====
[2025-11-21 08:08:52] 2025-11-21 13:08:51,739 [wrapper] ==== wrapper stderr END ====
[2025-11-21 08:08:52]  *** Error codes and diagnostics ***
[2025-11-21 08:08:52]     "exeErrorCode": 0,
[2025-11-21 08:08:52]     "exeErrorDiag": "",
[2025-11-21 08:08:52]     "pilotErrorCode": 0,
[2025-11-21 08:08:52]     "pilotErrorDiag": "",
[2025-11-21 08:08:52]  *** Listing of results directory ***
[2025-11-21 08:08:52] total 1324864
[2025-11-21 08:08:52] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-21 08:08:52] -rwx------. 1 boincer umatlas     36292 Nov 20 05:23 runpilot2-wrapper.sh
[2025-11-21 08:08:52] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:25 queuedata.json
[2025-11-21 08:08:52] -rw-r--r--. 1 boincer umatlas       100 Nov 21 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 08:08:52] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 00:03 run_atlas
[2025-11-21 08:08:52] -rw-r--r--. 1 boincer umatlas       105 Nov 21 00:03 job.xml
[2025-11-21 08:08:52] -rw-r--r--. 2 boincer umatlas 411667974 Nov 21 00:03 EVNT.47493127._000233.pool.root.1
[2025-11-21 08:08:52] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:03 start_atlas.sh
[2025-11-21 08:08:52] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 00:03 shared
[2025-11-21 08:08:52] -rw-r--r--. 2 boincer umatlas    590099 Nov 21 00:03 input.tar.gz
[2025-11-21 08:08:52] -rw-r--r--. 1 boincer umatlas         0 Nov 21 00:03 boinc_lockfile
[2025-11-21 08:08:52] -rw-r--r--. 1 boincer umatlas      2786 Nov 21 00:03 pandaJob.out
[2025-11-21 08:08:52] -rw-------. 1 boincer umatlas        57 Nov 21 00:03 setup.sh.local
[2025-11-21 08:08:52] -rw-------. 1 boincer umatlas    989817 Nov 21 00:04 agis_schedconf.cvmfs.json
[2025-11-21 08:08:52] drwx------. 5 boincer umatlas      4096 Nov 21 00:04 pilot3
[2025-11-21 08:08:52] -rw-r--r--. 1 boincer umatlas       533 Nov 21 07:47 boinc_task_state.xml
[2025-11-21 08:08:52] -rw-r--r--. 1 boincer umatlas      7178 Nov 21 08:04 init_data.xml
[2025-11-21 08:08:52] -rw-------. 1 boincer umatlas 930191221 Nov 21 08:05 HITS.47523449._002322.pool.root.1
[2025-11-21 08:08:52] -rw-------. 1 boincer umatlas      1044 Nov 21 08:06 memory_monitor_summary.json
[2025-11-21 08:08:52] -rw-------. 1 boincer umatlas   1526164 Nov 21 08:06 agis_ddmendpoints.agis.ALL.json
[2025-11-21 08:08:52] -rw-------. 1 boincer umatlas   1736089 Nov 21 08:06 log.47523449._002322.job.log.tgz.1
[2025-11-21 08:08:52] -rw-------. 1 boincer umatlas        95 Nov 21 08:07 pilot_heartbeat.json
[2025-11-21 08:08:52] -rw-------. 1 boincer umatlas      8594 Nov 21 08:07 heartbeat.json
[2025-11-21 08:08:52] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 08:08 boinc_mmap_file
[2025-11-21 08:08:52] -rw-------. 1 boincer umatlas      4825 Nov 21 08:08 pilotlog.txt
[2025-11-21 08:08:52] -rw-r--r--. 1 boincer umatlas        29 Nov 21 08:08 wrapper_checkpoint.txt
[2025-11-21 08:08:52] -rw-------. 1 boincer umatlas   3702768 Nov 21 08:08 log.47523449._002322.job.log.1
[2025-11-21 08:08:52] -rw-------. 1 boincer umatlas       353 Nov 21 08:08 output.list
[2025-11-21 08:08:52] -rw-r--r--. 1 boincer umatlas       620 Nov 21 08:08 runtime_log
[2025-11-21 08:08:52] -rw-------. 1 boincer umatlas   5457920 Nov 21 08:08 result.tar.gz
[2025-11-21 08:08:52] -rw-r--r--. 1 boincer umatlas      9356 Nov 21 08:08 runtime_log.err
[2025-11-21 08:08:52] -rw-------. 1 boincer umatlas       659 Nov 21 08:08 b2aMDmqzGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjRHKDmlulnfm.diag
[2025-11-21 08:08:52] -rw-r--r--. 1 boincer umatlas     21788 Nov 21 08:08 stderr.txt
[2025-11-21 08:08:52] HITS file was successfully produced:
[2025-11-21 08:08:52] -rw-------. 1 boincer umatlas 930191221 Nov 21 08:05 shared/HITS.pool.root.1
[2025-11-21 08:08:52]  *** Contents of shared directory: ***
[2025-11-21 08:08:52] total 1316348
[2025-11-21 08:08:52] -rw-r--r--. 2 boincer umatlas 411667974 Nov 21 00:03 ATLAS.root_0
[2025-11-21 08:08:52] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:03 start_atlas.sh
[2025-11-21 08:08:52] -rw-r--r--. 2 boincer umatlas    590099 Nov 21 00:03 input.tar.gz
[2025-11-21 08:08:52] -rw-------. 1 boincer umatlas 930191221 Nov 21 08:05 HITS.pool.root.1
[2025-11-21 08:08:52] -rw-------. 1 boincer umatlas   5457920 Nov 21 08:08 result.tar.gz
08:08:54 (335045): run_atlas exited; CPU time 132750.858408
08:08:54 (335045): called boinc_finish(0)

</stderr_txt>
]]>

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