Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
21:51:49 (1894562): wrapper (7.7.26015): starting
21:51:49 (1894562): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 21:51:50] Arguments: --nthreads 8
[2025-11-21 21:51:50] Threads: 8
[2025-11-21 21:51:50] Checking for CVMFS
[2025-11-21 21:51:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:51:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:51:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:51:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:51:53] 2.13.3.0 4524 1549 58224 153161 0 90 1391089 4096000 10363 130560 0 172549809 99.996 563646 849 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-11-21 21:51:53] CVMFS is ok
[2025-11-21 21:51:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 21:51:53] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-21 21:51:53] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-21 21:51:53] Further information can be found at the LHC@home message board.
[2025-11-21 21:51:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:51:53] Checking for apptainer binary...
[2025-11-21 21:51:53] apptainer is not installed, using version from CVMFS
[2025-11-21 21:51:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:51:53] 7950x-linux
[2025-11-21 21:51:53] apptainer works
[2025-11-21 21:51:53] Set ATHENA_PROC_NUMBER=8
[2025-11-21 21:51:53] Set ATHENA_CORE_NUMBER=8
[2025-11-21 21:51:54] Starting ATLAS job with PandaID=6894236468
[2025-11-21 21:51:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc503/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 20:05:42]  *** The last 200 lines of the pilot log: ***
[2025-11-22 20:05:42] 2025-11-23 04:04:36,347 | INFO     | time since job start (79933s) is within the limit (172800.0s)
[2025-11-22 20:05:42] 2025-11-23 04:04:36,995 | INFO     | monitor loop #5611: job 0:6894236468 is in state 'finished'
[2025-11-22 20:05:42] 2025-11-23 04:04:36,996 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:05:42] 2025-11-23 04:04:37,184 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 20:05:42] 2025-11-23 04:04:37,184 | INFO     | job 6894236468 has state=finished
[2025-11-22 20:05:42] 2025-11-23 04:04:37,184 | INFO     | preparing for final server update for job 6894236468 in state='finished'
[2025-11-22 20:05:42] 2025-11-23 04:04:37,184 | INFO     | this job has now completed (state=finished)
[2025-11-22 20:05:42] 2025-11-23 04:04:37,185 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-22 20:05:42] 2025-11-23 04:04:37,185 | INFO     | log transfer has been attempted: DONE
[2025-11-22 20:05:42] 2025-11-23 04:04:37,185 | INFO     | job 6894236468 has finished - writing final server update
[2025-11-22 20:05:42] 2025-11-23 04:04:37,185 | INFO     | total number of processed events: 1000 (read)
[2025-11-22 20:05:42] 2025-11-23 04:04:37,185 | INFO     | executing command: lscpu
[2025-11-22 20:05:42] 2025-11-23 04:04:37,211 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-22 20:05:42] 2025-11-23 04:04:38,353 | INFO     | time since job start (79935s) is within the limit (172800.0s)
[2025-11-22 20:05:42] 2025-11-23 04:04:39,498 | INFO     | monitor loop #5612: job 0:6894236468 is in state 'finished'
[2025-11-22 20:05:42] 2025-11-23 04:04:39,499 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:05:42] 2025-11-23 04:04:40,358 | INFO     | time since job start (79937s) is within the limit (172800.0s)
[2025-11-22 20:05:42] 2025-11-23 04:04:41,337 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 20:05:42] 2025-11-23 04:04:41,340 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3999.8732812499993
[2025-11-22 20:05:42] 2025-11-23 04:04:41,343 | INFO     | using path: /var/lib/multiboinc/boinc503/slots/4/PanDA_Pilot-6894236468/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 20:05:42] 2025-11-23 04:04:41,344 | INFO     | extracted standard info from prmon json
[2025-11-22 20:05:42] 2025-11-23 04:04:41,344 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 20:05:42] 2025-11-23 04:04:41,344 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 20:05:42] 2025-11-23 04:04:41,358 | INFO     | fitting pss+swap vs Time
[2025-11-22 20:05:42] 2025-11-23 04:04:41,359 | INFO     | sum of square deviations: 697095144707.5
[2025-11-22 20:05:42] 2025-11-23 04:04:41,381 | INFO     | sum of deviations: 9445522026515.496
[2025-11-22 20:05:42] 2025-11-23 04:04:41,381 | INFO     | mean x: 1763830699.5
[2025-11-22 20:05:42] 2025-11-23 04:04:41,381 | INFO     | mean y: 3504729.2358778627
[2025-11-22 20:05:42] 2025-11-23 04:04:41,381 | INFO     | intersect: -23896104742.52729
[2025-11-22 20:05:42] 2025-11-23 04:04:41,382 | INFO     | chi2: 12.513111097150018
[2025-11-22 20:05:42] 2025-11-23 04:04:41,383 | INFO     | sum of square deviations: 689143563060.0
[2025-11-22 20:05:42] 2025-11-23 04:04:41,408 | INFO     | sum of deviations: 9866781521079.0
[2025-11-22 20:05:42] 2025-11-23 04:04:41,408 | INFO     | mean x: 1763830547.0
[2025-11-22 20:05:42] 2025-11-23 04:04:41,408 | INFO     | mean y: 3512801.950191571
[2025-11-22 20:05:42] 2025-11-23 04:04:41,408 | INFO     | intersect: -25250050577.758907
[2025-11-22 20:05:42] 2025-11-23 04:04:41,409 | INFO     | chi2: 9.985500066840535
[2025-11-22 20:05:42] 2025-11-23 04:04:41,409 | INFO     | current chi2=9.985500066840535 (change=20.199701023074677 %)
[2025-11-22 20:05:42] 2025-11-23 04:04:41,409 | INFO     | right removable region: 1304
[2025-11-22 20:05:42] 2025-11-23 04:04:41,409 | INFO     | sum of square deviations: 689143563060.0
[2025-11-22 20:05:42] 2025-11-23 04:04:41,430 | INFO     | sum of deviations: 8937901102289.996
[2025-11-22 20:05:42] 2025-11-23 04:04:41,431 | INFO     | mean x: 1763830852.0
[2025-11-22 20:05:42] 2025-11-23 04:04:41,431 | INFO     | mean y: 3514458.8076628353
[2025-11-22 20:05:42] 2025-11-23 04:04:41,431 | INFO     | intersect: -22872627119.505726
[2025-11-22 20:05:42] 2025-11-23 04:04:41,431 | INFO     | chi2: 9.92262315203461
[2025-11-22 20:05:42] 2025-11-23 04:04:41,431 | INFO     | current chi2=9.92262315203461 (change=20.702189287725705 %)
[2025-11-22 20:05:42] 2025-11-23 04:04:41,431 | INFO     | left removable region: 10
[2025-11-22 20:05:42] 2025-11-23 04:04:41,432 | INFO     | sum of square deviations: 671863415807.5
[2025-11-22 20:05:42] 2025-11-23 04:04:41,450 | INFO     | sum of deviations: 9109226179584.496
[2025-11-22 20:05:42] 2025-11-23 04:04:41,450 | INFO     | mean x: 1763830821.5
[2025-11-22 20:05:42] 2025-11-23 04:04:41,450 | INFO     | mean y: 3527471.5200927355
[2025-11-22 20:05:42] 2025-11-23 04:04:41,450 | INFO     | intersect: -23910758553.7951
[2025-11-22 20:05:42] 2025-11-23 04:04:41,451 | INFO     | chi2: 7.078874675419004
[2025-11-22 20:05:42] 2025-11-23 04:04:41,451 | INFO     | current memory leak: 13.56 B/s (using 1294 data points, chi2=7.08)
[2025-11-22 20:05:42] 2025-11-23 04:04:41,452 | INFO     | could have reported an average CPU frequency of 3999 MHz (48 samples)
[2025-11-22 20:05:42] 2025-11-23 04:04:41,452 | INFO     | ..............................
[2025-11-22 20:05:42] 2025-11-23 04:04:41,452 | INFO     | . Timing measurements:
[2025-11-22 20:05:42] 2025-11-23 04:04:41,452 | INFO     | . get job = 0 s
[2025-11-22 20:05:42] 2025-11-23 04:04:41,452 | INFO     | . initial setup = 3 s
[2025-11-22 20:05:42] 2025-11-23 04:04:41,452 | INFO     | . payload setup = 7 s
[2025-11-22 20:05:42] 2025-11-23 04:04:41,452 | INFO     | . stage-in = 0 s
[2025-11-22 20:05:42] 2025-11-23 04:04:41,452 | INFO     | . payload execution = 79898 s
[2025-11-22 20:05:42] 2025-11-23 04:04:41,452 | INFO     | . stage-out = 4 s
[2025-11-22 20:05:42] 2025-11-23 04:04:41,452 | INFO     | . log creation = 0 s
[2025-11-22 20:05:42] 2025-11-23 04:04:41,452 | INFO     | ..............................
[2025-11-22 20:05:42] 2025-11-23 04:04:41,533 | INFO     | 
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | job summary report
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | --------------------------------------------------
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | PanDA job id: 6894236468
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | task id: 47533967
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | errors: (none)
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | pilot state: finished 
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | transexitcode: 0
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | exeerrorcode: 0
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | exeerrordiag: 
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | exitcode: 0
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | exitmsg: OK
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | cpuconsumptiontime: 136961 s
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | nevents: 1000
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | neventsw: 0
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | pid: 1996342
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | pgrp: 1996342
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | corecount: 8
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | event service: False
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | sizes: {0: 2298595, 1: 2298794, 7: 2299056, 12: 2299084, 79909: 2361896, 79914: 2370918, 79915: 2371102, 79921: 2371348}
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | --------------------------------------------------
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | 
[2025-11-22 20:05:42] 2025-11-23 04:04:41,534 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc503/slots/4
[2025-11-22 20:05:42] 2025-11-23 04:04:41,559 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 20:05:42] 2025-11-23 04:04:41,560 | INFO     | job 6894236468 has completed (purged errors)
[2025-11-22 20:05:42] 2025-11-23 04:04:41,561 | INFO     | overall cleanup function is called
[2025-11-22 20:05:42] 2025-11-23 04:04:42,573 | INFO     | --- collectZombieJob: --- 10, [1996342]
[2025-11-22 20:05:42] 2025-11-23 04:04:42,574 | INFO     | zombie collector waiting for pid 1996342
[2025-11-22 20:05:42] 2025-11-23 04:04:42,574 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 20:05:42] 2025-11-23 04:04:42,574 | INFO     | collected zombie processes
[2025-11-22 20:05:42] 2025-11-23 04:04:42,574 | INFO     | will attempt to kill all subprocesses of pid=1996342
[2025-11-22 20:05:42] 2025-11-23 04:04:42,885 | INFO     | process IDs to be killed: [1996342] (in reverse order)
[2025-11-22 20:05:42] 2025-11-23 04:04:43,011 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 20:05:42] 2025-11-23 04:04:43,011 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 20:05:42] 2025-11-23 04:04:43,017 | INFO     | did not find any defunct processes belonging to 1996342
[2025-11-22 20:05:42] 2025-11-23 04:04:43,026 | INFO     | did not find any defunct processes belonging to 1996342
[2025-11-22 20:05:42] 2025-11-23 04:04:43,026 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 20:05:42] 2025-11-23 04:04:43,026 | INFO     | ready for new job
[2025-11-22 20:05:42] 2025-11-23 04:04:43,027 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 20:05:42] 2025-11-23 04:04:43,029 | INFO     | ***************************************
[2025-11-22 20:05:42] 2025-11-23 04:04:43,032 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 20:05:42] 2025-11-23 04:04:43,032 | INFO     | ***************************************
[2025-11-22 20:05:42] 2025-11-23 04:04:43,033 | INFO     | 
[2025-11-22 20:05:42] 2025-11-23 04:04:43,034 | INFO     | architecture information:
[2025-11-22 20:05:42] 2025-11-23 04:04:43,034 | INFO     | executing command: cat /etc/os-release
[2025-11-22 20:05:42] 2025-11-23 04:04:43,045 | INFO     | cat /etc/os-release:
[2025-11-22 20:05:42] NAME="CentOS Linux"
[2025-11-22 20:05:42] VERSION="7 (Core)"
[2025-11-22 20:05:42] ID="centos"
[2025-11-22 20:05:42] ID_LIKE="rhel fedora"
[2025-11-22 20:05:42] VERSION_ID="7"
[2025-11-22 20:05:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 20:05:42] ANSI_COLOR="0;31"
[2025-11-22 20:05:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 20:05:42] HOME_URL="https://www.centos.org/"
[2025-11-22 20:05:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 20:05:42] 
[2025-11-22 20:05:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 20:05:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 20:05:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 20:05:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 20:05:42] 
[2025-11-22 20:05:42] 2025-11-23 04:04:43,045 | INFO     | ***************************************
[2025-11-22 20:05:42] 2025-11-23 04:04:43,548 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc503/slots/4
[2025-11-22 20:05:42] 2025-11-23 04:04:43,565 | INFO     | sufficient remaining disk space (182732193792 B)
[2025-11-22 20:05:42] 2025-11-23 04:04:43,566 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 20:05:42] 2025-11-23 04:04:43,566 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 20:05:42] 2025-11-23 04:04:43,566 | INFO     | update_server=False
[2025-11-22 20:05:42] 2025-11-23 04:04:43,566 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 20:05:42] 2025-11-23 04:04:43,566 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 20:05:42] 2025-11-23 04:04:43,566 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:05:42] 2025-11-23 04:04:43,566 | INFO     | aborting loop
[2025-11-22 20:05:42] 2025-11-23 04:04:43,805 | INFO     | all data control threads have been joined
[2025-11-22 20:05:42] 2025-11-23 04:04:44,570 | INFO     | [job] retrieve thread has finished
[2025-11-22 20:05:42] 2025-11-23 04:04:44,571 | INFO     | [job] job monitor thread has finished
[2025-11-22 20:05:42] 2025-11-23 04:04:44,618 | INFO     | all job control threads have been joined
[2025-11-22 20:05:42] 2025-11-23 04:04:44,696 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 20:05:42] 2025-11-23 04:04:44,810 | INFO     | [data] control thread has finished
[2025-11-22 20:05:42] 2025-11-23 04:04:45,008 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 20:05:42] 2025-11-23 04:04:45,037 | INFO     | [job] validate thread has finished
[2025-11-22 20:05:42] 2025-11-23 04:04:45,044 | INFO     | all payload control threads have been joined
[2025-11-22 20:05:42] 2025-11-23 04:04:45,061 | INFO     | [data] copytool_in thread has finished
[2025-11-22 20:05:42] 2025-11-23 04:04:45,446 | INFO     | [payload] validate_post thread has finished
[2025-11-22 20:05:42] 2025-11-23 04:04:45,571 | INFO     | [data] copytool_out thread has finished
[2025-11-22 20:05:42] 2025-11-23 04:04:45,623 | INFO     | [job] control thread has finished
[2025-11-22 20:05:42] 2025-11-23 04:04:45,902 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 20:05:42] 2025-11-23 04:04:45,978 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 20:05:42] 2025-11-23 04:04:46,049 | INFO     | [payload] control thread has finished
[2025-11-22 20:05:42] 2025-11-23 04:04:46,149 | INFO     | [payload] failed_post thread has finished
[2025-11-22 20:05:42] 2025-11-23 04:04:46,174 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 20:05:42] 2025-11-23 04:04:46,514 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:05:42] 2025-11-23 04:04:47,519 | INFO     | [job] queue monitor thread has finished
[2025-11-22 20:05:42] 2025-11-23 04:04:50,179 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 20:05:42] 2025-11-23 04:05:13,691 | INFO     | PID=1932527 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 20:05:42] 2025-11-23 04:05:13,691 | INFO     | .. there are 10 such processes running
[2025-11-22 20:05:42] 2025-11-23 04:05:13,691 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 20:05:42] 2025-11-23 04:05:13,691 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 20:05:42] 2025-11-23 04:05:13,692 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 20:05:42] 2025-11-23 04:05:36,521 | INFO     | [monitor] cgroup control has ended
[2025-11-22 20:05:42] 2025-11-23 04:05:37,249 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138945974519616)>', '<ExcThread(monitor, started 138945178351360)>']
[2025-11-22 20:05:42] 2025-11-23 04:05:37,811 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 20:05:42] 2025-11-23 04:05:37,812 | INFO     | [monitor] control thread has ended
[2025-11-22 20:05:42] 2025-11-23 04:05:42,274 | INFO     | all workflow threads have been joined
[2025-11-22 20:05:42] 2025-11-23 04:05:42,275 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 20:05:42] 2025-11-23 04:05:42,275 | INFO     | traces error code: 0
[2025-11-22 20:05:42] 2025-11-23 04:05:42,275 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 20:05:42] 2025-11-23 04:05:42,397 [wrapper] ==== pilot stdout END ====
[2025-11-22 20:05:42] 2025-11-23 04:05:42,399 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 20:05:42] 2025-11-23 04:05:42,400 [wrapper] pilotpid: 1932527
[2025-11-22 20:05:42] 2025-11-23 04:05:42,405 [wrapper] Pilot exit status: 0
[2025-11-22 20:05:42] 2025-11-23 04:05:42,420 [wrapper] pandaids: 6894236468
[2025-11-22 20:05:42] 2025-11-23 04:05:42,470 [wrapper] cleanup supervisor_pilot 4065129 1932529
[2025-11-22 20:05:42] 2025-11-23 04:05:42,472 [wrapper] Test setup, not cleaning
[2025-11-22 20:05:42] 2025-11-23 04:05:42,474 [wrapper] apfmon messages muted
[2025-11-22 20:05:42] 2025-11-23 04:05:42,475 [wrapper] ==== wrapper stdout END ====
[2025-11-22 20:05:42] 2025-11-23 04:05:42,480 [wrapper] ==== wrapper stderr END ====
[2025-11-22 20:05:42]  *** Error codes and diagnostics ***
[2025-11-22 20:05:42]     "exeErrorCode": 0,
[2025-11-22 20:05:42]     "exeErrorDiag": "",
[2025-11-22 20:05:42]     "pilotErrorCode": 0,
[2025-11-22 20:05:42]     "pilotErrorDiag": "",
[2025-11-22 20:05:42]  *** Listing of results directory ***
[2025-11-22 20:05:42] total 1340368
[2025-11-22 20:05:42] -rw-r--r-- 1 root root    576529 Nov 20 16:06 pilot3.tar.gz
[2025-11-22 20:05:42] -rw-r--r-- 1 root root      5112 Nov 20 16:08 queuedata.json
[2025-11-22 20:05:42] -rwx------ 1 4871 1028     36292 Nov 20 16:09 runpilot2-wrapper.sh
[2025-11-22 20:05:42] -rw-r--r-- 1 root root       100 Nov 21 21:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 20:05:42] -rwxr-xr-x 1 root root      7986 Nov 21 21:51 run_atlas
[2025-11-22 20:05:42] -rw-r--r-- 1 root root       105 Nov 21 21:51 job.xml
[2025-11-22 20:05:42] -rw-r--r-- 1 root root      7071 Nov 21 21:51 init_data.xml
[2025-11-22 20:05:42] -rw-r--r-- 2 root root 410316283 Nov 21 21:51 EVNT.47493127._002030.pool.root.1
[2025-11-22 20:05:42] drwxrwx--x 2 root root      4096 Nov 21 21:51 shared
[2025-11-22 20:05:42] -rw-r--r-- 2 root root    590103 Nov 21 21:51 input.tar.gz
[2025-11-22 20:05:42] -rw-r--r-- 2 root root     15847 Nov 21 21:51 start_atlas.sh
[2025-11-22 20:05:42] -rw-r--r-- 1 root root         0 Nov 21 21:51 boinc_lockfile
[2025-11-22 20:05:42] -rw-r--r-- 1 root root      2783 Nov 21 21:51 pandaJob.out
[2025-11-22 20:05:42] -rw------- 1 root root    989752 Nov 21 21:52 agis_schedconf.cvmfs.json
[2025-11-22 20:05:42] drwxr-xr-x 5  320  320      4096 Nov 21 21:52 pilot3
[2025-11-22 20:05:42] -rw-r--r-- 1 root root       533 Nov 22 19:57 boinc_task_state.xml
[2025-11-22 20:05:42] -rw------- 1 root root 931197195 Nov 22 20:04 HITS.47533967._000017.pool.root.1
[2025-11-22 20:05:42] -rw------- 1 root root      1065 Nov 22 20:04 memory_monitor_summary.json
[2025-11-22 20:05:42] -rw------- 1 root root   1526164 Nov 22 20:04 agis_ddmendpoints.agis.ALL.json
[2025-11-22 20:05:42] -rw------- 1 root root   2387085 Nov 22 20:04 log.47533967._000017.job.log.tgz.1
[2025-11-22 20:05:42] -rw------- 1 root root      8620 Nov 22 20:04 heartbeat.json
[2025-11-22 20:05:42] -rw------- 1 root root        95 Nov 22 20:05 pilot_heartbeat.json
[2025-11-22 20:05:42] -rw-r--r-- 1 root root      8192 Nov 22 20:05 boinc_mmap_file
[2025-11-22 20:05:42] -rw------- 1 root root      4839 Nov 22 20:05 pilotlog.txt
[2025-11-22 20:05:42] -rw-r--r-- 1 root root        29 Nov 22 20:05 wrapper_checkpoint.txt
[2025-11-22 20:05:42] -rw------- 1 root root  11163555 Nov 22 20:05 log.47533967._000017.job.log.1
[2025-11-22 20:05:42] -rw------- 1 root root       353 Nov 22 20:05 output.list
[2025-11-22 20:05:42] -rw-r--r-- 1 root root       620 Nov 22 20:05 runtime_log
[2025-11-22 20:05:42] -rw------- 1 root root  13568000 Nov 22 20:05 result.tar.gz
[2025-11-22 20:05:42] -rw-r--r-- 1 root root      9019 Nov 22 20:05 runtime_log.err
[2025-11-22 20:05:42] -rw------- 1 root root       664 Nov 22 20:05 7neLDmNtTg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWBHKDmUDETvm.diag
[2025-11-22 20:05:42] -rw-r--r-- 1 root root     21916 Nov 22 20:05 stderr.txt
[2025-11-22 20:05:42] HITS file was successfully produced:
[2025-11-22 20:05:42] -rw------- 1 root root 931197195 Nov 22 20:04 shared/HITS.pool.root.1
[2025-11-22 20:05:42]  *** Contents of shared directory: ***
[2025-11-22 20:05:42] total 1323932
[2025-11-22 20:05:42] -rw-r--r-- 2 root root 410316283 Nov 21 21:51 ATLAS.root_0
[2025-11-22 20:05:42] -rw-r--r-- 2 root root    590103 Nov 21 21:51 input.tar.gz
[2025-11-22 20:05:42] -rw-r--r-- 2 root root     15847 Nov 21 21:51 start_atlas.sh
[2025-11-22 20:05:42] -rw------- 1 root root 931197195 Nov 22 20:04 HITS.pool.root.1
[2025-11-22 20:05:42] -rw------- 1 root root  13568000 Nov 22 20:05 result.tar.gz
20:05:44 (1894562): run_atlas exited; CPU time 137559.562323
20:05:44 (1894562): called boinc_finish(0)

</stderr_txt>
]]>

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