Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:14:57 (2764519): wrapper (7.7.26015): starting
00:14:57 (2764519): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 00:14:57] Arguments: --nthreads 9
[2025-11-21 00:14:57] Threads: 9
[2025-11-21 00:14:57] Checking for CVMFS
[2025-11-21 00:14:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:14:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:14:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:15:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:15:00] 2.13.3.0 9735 22418 210936 153110 3 59 32413515 32935936 13955 16776704 0 103065818 99.776 61858933 33141 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 00:15:00] CVMFS is ok
[2025-11-21 00:15:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:15:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:15:00] Further information can be found at the LHC@home message board.
[2025-11-21 00:15:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:15:00] Checking for apptainer binary...
[2025-11-21 00:15:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:15:00] Running /usr/bin/apptainer --version
[2025-11-21 00:15:01] apptainer version 1.4.4-1.el9
[2025-11-21 00:15:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:15:22] c-8-15.aglt2.org
[2025-11-21 00:15:22] apptainer works
[2025-11-21 00:15:22] Set ATHENA_PROC_NUMBER=9
[2025-11-21 00:15:22] Set ATHENA_CORE_NUMBER=9
[2025-11-21 00:15:22] Starting ATLAS job with PandaID=6893877115
[2025-11-21 00:15:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 00:02:19]  *** The last 200 lines of the pilot log: ***
[2025-11-23 00:02:19] 2025-11-23 01:43:26,767 | INFO     | time since job start (160002s) is within the limit (172800.0s)
[2025-11-23 00:02:19] 2025-11-23 01:43:28,791 | INFO     | time since job start (160004s) is within the limit (172800.0s)
[2025-11-23 00:02:19] 2025-11-23 01:43:29,123 | INFO     | monitor loop #7548: job 0:6893877115 is in state 'finished'
[2025-11-23 00:02:19] 2025-11-23 01:43:29,123 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 00:02:19] 2025-11-23 01:43:30,803 | INFO     | time since job start (160006s) is within the limit (172800.0s)
[2025-11-23 00:02:19] 2025-11-23 01:43:31,634 | INFO     | monitor loop #7549: job 0:6893877115 is in state 'finished'
[2025-11-23 00:02:19] 2025-11-23 01:43:31,634 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 00:02:19] 2025-11-23 01:43:32,819 | INFO     | time since job start (160008s) is within the limit (172800.0s)
[2025-11-23 00:02:19] 2025-11-23 01:43:34,154 | INFO     | monitor loop #7550: job 0:6893877115 is in state 'finished'
[2025-11-23 00:02:19] 2025-11-23 01:43:34,154 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 00:02:19] 2025-11-23 01:43:35,046 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 00:02:19] 2025-11-23 01:43:35,146 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.18185
[2025-11-23 00:02:19] 2025-11-23 01:43:35,190 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6893877115/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 00:02:19] 2025-11-23 01:43:35,214 | INFO     | extracted standard info from prmon json
[2025-11-23 00:02:19] 2025-11-23 01:43:35,238 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 00:02:19] 2025-11-23 01:43:35,239 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 00:02:19] 2025-11-23 01:43:35,984 | INFO     | fitting pss+swap vs Time
[2025-11-23 00:02:19] 2025-11-23 01:43:36,017 | INFO     | sum of square deviations: 5576403855146.624
[2025-11-23 00:02:19] 2025-11-23 01:43:36,788 | INFO     | monitor loop #7551: job 0:6893877115 is in state 'finished'
[2025-11-23 00:02:19] 2025-11-23 01:43:36,788 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 00:02:19] 2025-11-23 01:43:38,137 | INFO     | sum of deviations: 15639695547336.414
[2025-11-23 00:02:19] 2025-11-23 01:43:38,137 | INFO     | mean x: 1763782225.0301526
[2025-11-23 00:02:19] 2025-11-23 01:43:38,137 | INFO     | mean y: 3075941.7290076334
[2025-11-23 00:02:19] 2025-11-23 01:43:38,138 | INFO     | intersect: -4943663521.162687
[2025-11-23 00:02:19] 2025-11-23 01:43:38,224 | INFO     | chi2: 24.428186449181634
[2025-11-23 00:02:19] 2025-11-23 01:43:38,316 | INFO     | sum of square deviations: 5544542406382.736
[2025-11-23 00:02:19] 2025-11-23 01:43:39,532 | INFO     | monitor loop #7552: job 0:6893877115 is in state 'finished'
[2025-11-23 00:02:19] 2025-11-23 01:43:39,532 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 00:02:19] 2025-11-23 01:43:39,659 | INFO     | sum of deviations: 16559766596082.928
[2025-11-23 00:02:19] 2025-11-23 01:43:39,659 | INFO     | mean x: 1763782072.5437858
[2025-11-23 00:02:19] 2025-11-23 01:43:39,659 | INFO     | mean y: 3080344.7216061186
[2025-11-23 00:02:19] 2025-11-23 01:43:39,659 | INFO     | intersect: -5264769967.696817
[2025-11-23 00:02:19] 2025-11-23 01:43:39,663 | INFO     | chi2: 21.29569727214357
[2025-11-23 00:02:19] 2025-11-23 01:43:39,664 | INFO     | current chi2=21.29569727214357 (change=12.823257197396268 %)
[2025-11-23 00:02:19] 2025-11-23 01:43:39,664 | INFO     | right removable region: 2614
[2025-11-23 00:02:19] 2025-11-23 01:43:39,668 | INFO     | sum of square deviations: 5544531170318.823
[2025-11-23 00:02:19] 2025-11-23 01:43:40,115 | INFO     | PID=2776280 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 00:02:19] 2025-11-23 01:43:40,240 | INFO     | .. there are 34 such processes running
[2025-11-23 00:02:19] 2025-11-23 01:43:41,040 | INFO     | sum of deviations: 14547066236665.803
[2025-11-23 00:02:19] 2025-11-23 01:43:41,045 | INFO     | mean x: 1763782377.5434034
[2025-11-23 00:02:19] 2025-11-23 01:43:41,045 | INFO     | mean y: 3081169.552581262
[2025-11-23 00:02:19] 2025-11-23 01:43:41,045 | INFO     | intersect: -4624516418.957755
[2025-11-23 00:02:19] 2025-11-23 01:43:41,147 | INFO     | chi2: 20.56989851478591
[2025-11-23 00:02:19] 2025-11-23 01:43:41,147 | INFO     | current chi2=20.56989851478591 (change=15.794410045224549 %)
[2025-11-23 00:02:19] 2025-11-23 01:43:41,147 | INFO     | left removable region: 10
[2025-11-23 00:02:19] 2025-11-23 01:43:41,157 | INFO     | sum of square deviations: 5474851985082.99
[2025-11-23 00:02:19] 2025-11-23 01:43:41,276 | INFO     | time since job start (160017s) is within the limit (172800.0s)
[2025-11-23 00:02:19] 2025-11-23 01:43:41,624 | INFO     | sum of deviations: 14726915814507.406
[2025-11-23 00:02:19] 2025-11-23 01:43:41,625 | INFO     | mean x: 1763782347.0733488
[2025-11-23 00:02:19] 2025-11-23 01:43:41,625 | INFO     | mean y: 3090833.259984639
[2025-11-23 00:02:19] 2025-11-23 01:43:41,625 | INFO     | intersect: -4741343210.114386
[2025-11-23 00:02:19] 2025-11-23 01:43:41,687 | INFO     | chi2: 14.250109802569963
[2025-11-23 00:02:19] 2025-11-23 01:43:41,687 | INFO     | current memory leak: 2.69 B/s (using 2604 data points, chi2=14.25)
[2025-11-23 00:02:19] 2025-11-23 01:43:41,714 | INFO     | could have reported an average CPU frequency of 2600 MHz (89 samples)
[2025-11-23 00:02:19] 2025-11-23 01:43:41,715 | INFO     | ..............................
[2025-11-23 00:02:19] 2025-11-23 01:43:41,715 | INFO     | . Timing measurements:
[2025-11-23 00:02:19] 2025-11-23 01:43:41,715 | INFO     | . get job = 0 s
[2025-11-23 00:02:19] 2025-11-23 01:43:41,715 | INFO     | . initial setup = 6 s
[2025-11-23 00:02:19] 2025-11-23 01:43:41,715 | INFO     | . payload setup = 30 s
[2025-11-23 00:02:19] 2025-11-23 01:43:41,715 | INFO     | . stage-in = 1 s
[2025-11-23 00:02:19] 2025-11-23 01:43:41,715 | INFO     | . payload execution = 159833 s
[2025-11-23 00:02:19] 2025-11-23 01:43:41,715 | INFO     | . stage-out = 18 s
[2025-11-23 00:02:19] 2025-11-23 01:43:41,715 | INFO     | . log creation = 6 s
[2025-11-23 00:02:19] 2025-11-23 01:43:41,715 | INFO     | ..............................
[2025-11-23 00:02:19] 2025-11-23 01:43:41,885 | INFO     | 
[2025-11-23 00:02:19] 2025-11-23 01:43:41,886 | INFO     | job summary report
[2025-11-23 00:02:19] 2025-11-23 01:43:41,886 | INFO     | --------------------------------------------------
[2025-11-23 00:02:19] 2025-11-23 01:43:41,886 | INFO     | PanDA job id: 6893877115
[2025-11-23 00:02:19] 2025-11-23 01:43:41,886 | INFO     | task id: 47523449
[2025-11-23 00:02:19] 2025-11-23 01:43:41,886 | INFO     | errors: (none)
[2025-11-23 00:02:19] 2025-11-23 01:43:41,886 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 00:02:19] 2025-11-23 01:43:41,887 | INFO     | pilot state: finished 
[2025-11-23 00:02:19] 2025-11-23 01:43:41,887 | INFO     | transexitcode: 0
[2025-11-23 00:02:19] 2025-11-23 01:43:41,887 | INFO     | exeerrorcode: 0
[2025-11-23 00:02:19] 2025-11-23 01:43:41,887 | INFO     | exeerrordiag: 
[2025-11-23 00:02:19] 2025-11-23 01:43:41,887 | INFO     | exitcode: 0
[2025-11-23 00:02:19] 2025-11-23 01:43:41,888 | INFO     | exitmsg: OK
[2025-11-23 00:02:19] 2025-11-23 01:43:41,888 | INFO     | cpuconsumptiontime: 298372 s
[2025-11-23 00:02:19] 2025-11-23 01:43:41,888 | INFO     | nevents: 1000
[2025-11-23 00:02:19] 2025-11-23 01:43:41,888 | INFO     | neventsw: 0
[2025-11-23 00:02:19] 2025-11-23 01:43:41,888 | INFO     | pid: 2791452
[2025-11-23 00:02:19] 2025-11-23 01:43:41,888 | INFO     | pgrp: 2791452
[2025-11-23 00:02:19] 2025-11-23 01:43:41,888 | INFO     | corecount: 9
[2025-11-23 00:02:19] 2025-11-23 01:43:41,889 | INFO     | event service: False
[2025-11-23 00:02:19] 2025-11-23 01:43:41,889 | INFO     | sizes: {0: 2297928, 2: 2298613, 3: 2298613, 4: 2298641, 5: 2298669, 6: 2298896, 17: 2299052, 29: 2299080, 37: 2299370, 40: 2299398, 159868: 2394239, 159871: 239451
[2025-11-23 00:02:19] 2025-11-23 01:43:41,889 | INFO     | --------------------------------------------------
[2025-11-23 00:02:19] 2025-11-23 01:43:41,889 | INFO     | 
[2025-11-23 00:02:19] 2025-11-23 01:43:41,890 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-23 00:02:19] 2025-11-23 01:43:41,913 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,914 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,914 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,914 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,914 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,914 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,914 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,914 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,915 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,915 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,915 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,915 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,915 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,915 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,915 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,915 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,916 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,916 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 00:02:19] 2025-11-23 01:43:41,916 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,916 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 00:02:19] 2025-11-23 01:43:41,916 | INFO     | job 6893877115 has completed (purged errors)
[2025-11-23 00:02:19] 2025-11-23 01:43:41,916 | INFO     | overall cleanup function is called
[2025-11-23 00:02:19] 2025-11-23 01:43:42,946 | INFO     | --- collectZombieJob: --- 10, [2791452]
[2025-11-23 00:02:19] 2025-11-23 01:43:42,946 | INFO     | zombie collector waiting for pid 2791452
[2025-11-23 00:02:19] 2025-11-23 01:43:42,946 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 00:02:19] 2025-11-23 01:43:42,947 | INFO     | collected zombie processes
[2025-11-23 00:02:19] 2025-11-23 01:43:42,947 | INFO     | will attempt to kill all subprocesses of pid=2791452
[2025-11-23 00:02:19] 2025-11-23 01:43:46,190 | INFO     | process IDs to be killed: [2791452] (in reverse order)
[2025-11-23 00:02:19] 2025-11-23 01:43:46,540 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 00:02:19] 2025-11-23 01:43:46,550 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 00:02:19] 2025-11-23 01:43:46,711 | INFO     | did not find any defunct processes belonging to 2791452
[2025-11-23 00:02:19] 2025-11-23 01:43:46,849 | INFO     | did not find any defunct processes belonging to 2791452
[2025-11-23 00:02:19] 2025-11-23 01:43:46,887 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 00:02:19] 2025-11-23 01:43:46,888 | INFO     | ready for new job
[2025-11-23 00:02:19] 2025-11-23 01:43:46,888 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 00:02:19] 2025-11-23 01:43:47,012 | INFO     | ***************************************
[2025-11-23 00:02:19] 2025-11-23 01:43:47,012 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 00:02:19] 2025-11-23 01:43:47,013 | INFO     | ***************************************
[2025-11-23 00:02:19] 2025-11-23 01:43:47,013 | INFO     | 
[2025-11-23 00:02:19] 2025-11-23 01:43:47,028 | INFO     | architecture information:
[2025-11-23 00:02:19] 2025-11-23 01:43:47,036 | INFO     | executing command: cat /etc/os-release
[2025-11-23 00:02:19] 2025-11-23 01:43:47,173 | INFO     | cat /etc/os-release:
[2025-11-23 00:02:19] NAME="CentOS Linux"
[2025-11-23 00:02:19] VERSION="7 (Core)"
[2025-11-23 00:02:19] ID="centos"
[2025-11-23 00:02:19] ID_LIKE="rhel fedora"
[2025-11-23 00:02:19] VERSION_ID="7"
[2025-11-23 00:02:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 00:02:19] ANSI_COLOR="0;31"
[2025-11-23 00:02:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 00:02:19] HOME_URL="https://www.centos.org/"
[2025-11-23 00:02:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 00:02:19] 
[2025-11-23 00:02:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 00:02:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 00:02:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 00:02:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 00:02:19] 
[2025-11-23 00:02:19] 2025-11-23 01:43:47,173 | INFO     | ***************************************
[2025-11-23 00:02:19] 2025-11-23 01:43:47,693 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-23 00:02:19] 2025-11-23 01:43:47,923 | INFO     | sufficient remaining disk space (70554484736 B)
[2025-11-23 00:02:19] 2025-11-23 01:43:47,924 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 00:02:19] 2025-11-23 01:43:47,924 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 00:02:19] 2025-11-23 01:43:47,924 | INFO     | update_server=False
[2025-11-23 00:02:19] 2025-11-23 01:43:47,924 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 00:02:19] 2025-11-23 01:43:47,933 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 00:02:19] 2025-11-23 01:43:47,933 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 00:02:19] 2025-11-23 01:43:47,989 | INFO     | all data control threads have been joined
[2025-11-23 00:02:19] 2025-11-23 01:43:48,021 | INFO     | all job control threads have been joined
[2025-11-23 00:02:19] 2025-11-23 01:43:48,247 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 00:02:19] 2025-11-23 01:43:48,412 | INFO     | aborting loop
[2025-11-23 00:02:19] 2025-11-23 01:43:48,930 | INFO     | [job] retrieve thread has finished
[2025-11-23 00:02:19] 2025-11-23 01:43:48,955 | INFO     | [job] queue monitor thread has finished
[2025-11-23 00:02:19] 2025-11-23 01:43:48,995 | INFO     | [data] control thread has finished
[2025-11-23 00:02:19] 2025-11-23 01:43:49,027 | INFO     | [job] control thread has finished
[2025-11-23 00:02:19] 2025-11-23 01:43:49,118 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 00:02:19] 2025-11-23 01:43:49,319 | INFO     | all payload control threads have been joined
[2025-11-23 00:02:19] 2025-11-23 01:43:49,417 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 00:02:19] 2025-11-23 01:43:49,418 | INFO     | [job] job monitor thread has finished
[2025-11-23 00:02:19] 2025-11-23 01:43:49,431 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 00:02:19] 2025-11-23 01:43:49,440 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 00:02:19] 2025-11-23 01:43:49,850 | INFO     | [payload] validate_post thread has finished
[2025-11-23 00:02:19] 2025-11-23 01:43:49,961 | INFO     | [data] copytool_out thread has finished
[2025-11-23 00:02:19] 2025-11-23 01:43:50,375 | INFO     | [payload] control thread has finished
[2025-11-23 00:02:19] 2025-11-23 01:43:50,419 | INFO     | [job] validate thread has finished
[2025-11-23 00:02:19] 2025-11-23 01:43:50,436 | INFO     | [data] copytool_in thread has finished
[2025-11-23 00:02:19] 2025-11-23 01:43:50,529 | INFO     | [payload] failed_post thread has finished
[2025-11-23 00:02:19] 2025-11-23 01:43:50,917 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 00:02:19] 2025-11-23 01:43:54,979 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 00:02:19] 2025-11-23 01:44:20,453 | INFO     | PID=2776280 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 00:02:19] 2025-11-23 01:44:20,458 | INFO     | .. there are 34 such processes running
[2025-11-23 00:02:19] 2025-11-23 01:44:20,458 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 00:02:19] 2025-11-23 01:44:20,459 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 00:02:19] 2025-11-23 01:44:20,459 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 00:02:19] 2025-11-23 01:44:23,277 | INFO     | [monitor] cgroup control has ended
[2025-11-23 00:02:19] 2025-11-23 01:44:24,931 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140516071585600)>', '<ExcThread(monitor, started 140515710310144)>']
[2025-11-23 00:02:19] 2025-11-23 01:44:25,496 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 00:02:19] 2025-11-23 01:44:25,496 | INFO     | [monitor] control thread has ended
[2025-11-23 00:02:19] 2025-11-23 01:44:29,956 | INFO     | all workflow threads have been joined
[2025-11-23 00:02:19] 2025-11-23 01:44:29,956 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 00:02:19] 2025-11-23 01:44:29,957 | INFO     | traces error code: 0
[2025-11-23 00:02:19] 2025-11-23 01:44:29,957 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 00:02:19] 2025-11-23 01:44:33,299 [wrapper] ==== pilot stdout END ====
[2025-11-23 00:02:19] 2025-11-23 01:44:33,336 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 00:02:19] 2025-11-23 01:44:33,373 [wrapper] pilotpid: 2776280
[2025-11-23 00:02:19] 2025-11-23 01:44:33,403 [wrapper] Pilot exit status: 0
[2025-11-23 00:02:19] 2025-11-23 01:44:33,615 [wrapper] pandaids: 6893877115
[2025-11-23 00:02:19] 2025-11-23 01:44:34,369 [wrapper] cleanup supervisor_pilot 3456837 2776281
[2025-11-23 00:02:19] 2025-11-23 01:44:34,381 [wrapper] Test setup, not cleaning
[2025-11-23 00:02:19] 2025-11-23 01:44:34,430 [wrapper] apfmon messages muted
[2025-11-23 00:02:19] 2025-11-23 01:44:34,509 [wrapper] ==== wrapper stdout END ====
[2025-11-23 00:02:19] 2025-11-23 01:44:34,562 [wrapper] ==== wrapper stderr END ====
[2025-11-23 00:02:19]  *** Error codes and diagnostics ***
[2025-11-23 00:02:19]     "exeErrorCode": 0,
[2025-11-23 00:02:19]     "exeErrorDiag": "",
[2025-11-23 00:02:19]     "pilotErrorCode": 0,
[2025-11-23 00:02:19]     "pilotErrorDiag": "",
[2025-11-23 00:02:19]  *** Listing of results directory ***
[2025-11-23 00:02:19] total 1341164
[2025-11-23 00:02:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 13:04 pilot3.tar.gz
[2025-11-23 00:02:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 13:10 queuedata.json
[2025-11-23 00:02:19] -rwx------. 1 boincer umatlas     36292 Nov 20 13:11 runpilot2-wrapper.sh
[2025-11-23 00:02:19] -rw-r--r--. 1 boincer umatlas       100 Nov 21 00:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 00:02:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 00:14 run_atlas
[2025-11-23 00:02:19] -rw-r--r--. 1 boincer umatlas       105 Nov 21 00:14 job.xml
[2025-11-23 00:02:19] -rw-r--r--. 2 boincer umatlas 409482989 Nov 21 00:14 EVNT.47493127._000789.pool.root.1
[2025-11-23 00:02:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:14 start_atlas.sh
[2025-11-23 00:02:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 00:14 shared
[2025-11-23 00:02:19] -rw-r--r--. 2 boincer umatlas    590100 Nov 21 00:14 input.tar.gz
[2025-11-23 00:02:19] -rw-r--r--. 1 boincer umatlas         0 Nov 21 00:14 boinc_lockfile
[2025-11-23 00:02:19] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 00:15 pandaJob.out
[2025-11-23 00:02:19] -rw-------. 1 boincer umatlas        57 Nov 21 00:15 setup.sh.local
[2025-11-23 00:02:19] -rw-------. 1 boincer umatlas    989817 Nov 21 00:16 agis_schedconf.cvmfs.json
[2025-11-23 00:02:19] drwx------. 5 boincer umatlas      4096 Nov 21 00:16 pilot3
[2025-11-23 00:02:19] -rw-r--r--. 1 boincer umatlas       533 Nov 22 19:54 boinc_task_state.xml
[2025-11-23 00:02:19] -rw-------. 1 boincer umatlas 918472492 Nov 22 20:40 HITS.47523449._007882.pool.root.1
[2025-11-23 00:02:19] -rw-------. 1 boincer umatlas      1070 Nov 22 20:42 memory_monitor_summary.json
[2025-11-23 00:02:19] -rw-------. 1 boincer umatlas   1526164 Nov 22 20:42 agis_ddmendpoints.agis.ALL.json
[2025-11-23 00:02:19] -rw-------. 1 boincer umatlas   3240121 Nov 22 20:42 log.47523449._007882.job.log.tgz.1
[2025-11-23 00:02:19] -rw-------. 1 boincer umatlas        95 Nov 22 20:43 pilot_heartbeat.json
[2025-11-23 00:02:19] -rw-------. 1 boincer umatlas      8653 Nov 22 20:43 heartbeat.json
[2025-11-23 00:02:19] -rw-------. 1 boincer umatlas      4824 Nov 22 20:44 pilotlog.txt
[2025-11-23 00:02:19] -rw-------. 1 boincer umatlas  17493724 Nov 22 20:44 log.47523449._007882.job.log.1
[2025-11-23 00:02:19] -rw-------. 1 boincer umatlas       353 Nov 22 20:44 output.list
[2025-11-23 00:02:19] -rw-r--r--. 1 boincer umatlas       620 Nov 22 20:44 runtime_log
[2025-11-23 00:02:19] -rw-------. 1 boincer umatlas  20756480 Nov 22 20:44 result.tar.gz
[2025-11-23 00:02:19] -rw-r--r--. 1 boincer umatlas      9334 Nov 22 20:44 runtime_log.err
[2025-11-23 00:02:19] -rw-------. 1 boincer umatlas       666 Nov 22 20:44 oPCNDmaJOg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1wGKDmpququn.diag
[2025-11-23 00:02:19] -rw-r--r--. 1 boincer umatlas      6663 Nov 23 00:02 init_data.xml
[2025-11-23 00:02:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 00:02 boinc_mmap_file
[2025-11-23 00:02:19] -rw-r--r--. 1 boincer umatlas        29 Nov 23 00:02 wrapper_checkpoint.txt
[2025-11-23 00:02:19] -rw-r--r--. 1 boincer umatlas     21892 Nov 23 00:02 stderr.txt
[2025-11-23 00:02:20] HITS file was successfully produced:
[2025-11-23 00:02:20] -rw-------. 1 boincer umatlas 918472492 Nov 22 20:40 shared/HITS.pool.root.1
[2025-11-23 00:02:20]  *** Contents of shared directory: ***
[2025-11-23 00:02:20] total 1317708
[2025-11-23 00:02:20] -rw-r--r--. 2 boincer umatlas 409482989 Nov 21 00:14 ATLAS.root_0
[2025-11-23 00:02:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:14 start_atlas.sh
[2025-11-23 00:02:20] -rw-r--r--. 2 boincer umatlas    590100 Nov 21 00:14 input.tar.gz
[2025-11-23 00:02:20] -rw-------. 1 boincer umatlas 918472492 Nov 22 20:40 HITS.pool.root.1
[2025-11-23 00:02:20] -rw-------. 1 boincer umatlas  20756480 Nov 22 20:44 result.tar.gz
00:02:21 (2764519): run_atlas exited; CPU time 303015.903526
00:02:21 (2764519): called boinc_finish(0)

</stderr_txt>
]]>

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