Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:13:56 (1757886): wrapper (7.7.26015): starting
00:13:56 (1757886): wrapper: running run_atlas (--nthreads 11)
[2025-11-21 00:13:56] Arguments: --nthreads 11
[2025-11-21 00:13:56] Threads: 11
[2025-11-21 00:13:56] Checking for CVMFS
[2025-11-21 00:13:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:13:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:13:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:14:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:14:18] 2.13.3.0 9185 22371 316876 153109 0 133 28523955 32935937 15611 16776704 0 131752849 99.780 71006403 32245 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 00:14:18] CVMFS is ok
[2025-11-21 00:14:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:14:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:14:18] Further information can be found at the LHC@home message board.
[2025-11-21 00:14:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:14:18] Checking for apptainer binary...
[2025-11-21 00:14:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:14:18] Running /usr/bin/apptainer --version
[2025-11-21 00:14:19] apptainer version 1.4.4-1.el9
[2025-11-21 00:14:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:14:19] c-5-6.aglt2.org
[2025-11-21 00:14:19] apptainer works
[2025-11-21 00:14:19] Set ATHENA_PROC_NUMBER=11
[2025-11-21 00:14:19] Set ATHENA_CORE_NUMBER=11
[2025-11-21 00:14:20] Starting ATLAS job with PandaID=6893876823
[2025-11-21 00:14:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:00:03 (1757886): BOINC client no longer exists - exiting
09:00:03 (1757886): timer handler: client dead, exiting
09:55:23 (521786): wrapper (7.7.26015): starting
09:55:23 (521786): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 09:55:23] Arguments: --nthreads 8
[2025-11-22 09:55:23] Threads: 8
[2025-11-22 09:55:23] This job has been restarted, cleaning up previous attempt
[2025-11-22 09:55:23] Checking for CVMFS
[2025-11-22 09:55:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 09:55:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 09:55:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 09:55:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 09:55:24] 2.13.3.0 9185 24392 323704 153174 2 538 30375893 32935937 19004 16776704 0 143481739 99.787 75144227 32112 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 09:55:24] CVMFS is ok
[2025-11-22 09:55:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 09:55:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 09:55:24] Further information can be found at the LHC@home message board.
[2025-11-22 09:55:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 09:55:24] Checking for apptainer binary...
[2025-11-22 09:55:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 09:55:24] Running /usr/bin/apptainer --version
[2025-11-22 09:55:24] apptainer version 1.4.4-1.el9
[2025-11-22 09:55:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 09:55:24] c-5-6.aglt2.org
[2025-11-22 09:55:24] apptainer works
[2025-11-22 09:55:24] Set ATHENA_PROC_NUMBER=8
[2025-11-22 09:55:24] Set ATHENA_CORE_NUMBER=8
[2025-11-22 09:55:24] Starting ATLAS job with PandaID=6893876823
[2025-11-22 09:55:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 18:17:38]  *** The last 200 lines of the pilot log: ***
[2025-11-23 18:17:38] 2025-11-23 23:16:30,764 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 18:17:38] 2025-11-23 23:16:30,835 | INFO     | fitting pss+swap vs Time
[2025-11-23 18:17:38] 2025-11-23 23:16:30,843 | INFO     | sum of square deviations: 2153828073167.0312
[2025-11-23 18:17:38] 2025-11-23 23:16:31,025 | INFO     | sum of deviations: 7320933887468.576
[2025-11-23 18:17:38] 2025-11-23 23:16:31,028 | INFO     | mean x: 1763881543.4544024
[2025-11-23 18:17:38] 2025-11-23 23:16:31,029 | INFO     | mean y: 2971737.115828092
[2025-11-23 18:17:38] 2025-11-23 23:16:31,029 | INFO     | intersect: -5992520812.095771
[2025-11-23 18:17:38] 2025-11-23 23:16:31,031 | INFO     | chi2: 11.291441669239553
[2025-11-23 18:17:38] 2025-11-23 23:16:31,041 | INFO     | sum of square deviations: 2136941419943.277
[2025-11-23 18:17:38] 2025-11-23 23:16:31,154 | INFO     | sum of deviations: 7959086177799.257
[2025-11-23 18:17:38] 2025-11-23 23:16:31,154 | INFO     | mean x: 1763881390.962165
[2025-11-23 18:17:38] 2025-11-23 23:16:31,154 | INFO     | mean y: 2977499.697845507
[2025-11-23 18:17:38] 2025-11-23 23:16:31,154 | INFO     | intersect: -6566638245.059885
[2025-11-23 18:17:38] 2025-11-23 23:16:31,157 | INFO     | chi2: 8.347085102302334
[2025-11-23 18:17:38] 2025-11-23 23:16:31,157 | INFO     | current chi2=8.347085102302334 (change=26.076002101293362 %)
[2025-11-23 18:17:38] 2025-11-23 23:16:31,160 | INFO     | sum of square deviations: 2120143280006.7883
[2025-11-23 18:17:38] 2025-11-23 23:16:31,278 | INFO     | sum of deviations: 8647384785308.648
[2025-11-23 18:17:38] 2025-11-23 23:16:31,278 | INFO     | mean x: 1763881238.4699683
[2025-11-23 18:17:38] 2025-11-23 23:16:31,279 | INFO     | mean y: 2983746.449947313
[2025-11-23 18:17:38] 2025-11-23 23:16:31,279 | INFO     | intersect: -7191322378.269955
[2025-11-23 18:17:38] 2025-11-23 23:16:31,281 | INFO     | chi2: 4.892207670462968
[2025-11-23 18:17:38] 2025-11-23 23:16:31,281 | INFO     | current chi2=4.892207670462968 (change=41.390226522147536 %)
[2025-11-23 18:17:38] 2025-11-23 23:16:31,284 | INFO     | sum of square deviations: 2103433305144.0254
[2025-11-23 18:17:38] 2025-11-23 23:16:31,373 | INFO     | sum of deviations: 8941478914186.246
[2025-11-23 18:17:38] 2025-11-23 23:16:31,373 | INFO     | mean x: 1763881085.9772847
[2025-11-23 18:17:38] 2025-11-23 23:16:31,373 | INFO     | mean y: 2986429.656629688
[2025-11-23 18:17:38] 2025-11-23 23:16:31,373 | INFO     | intersect: -7495090879.867531
[2025-11-23 18:17:38] 2025-11-23 23:16:31,376 | INFO     | chi2: 4.114300494393081
[2025-11-23 18:17:38] 2025-11-23 23:16:31,376 | INFO     | current chi2=4.114300494393081 (change=15.900943469071303 %)
[2025-11-23 18:17:38] 2025-11-23 23:16:31,376 | INFO     | right removable region: 1892
[2025-11-23 18:17:38] 2025-11-23 23:16:31,379 | INFO     | sum of square deviations: 2136937981373.2769
[2025-11-23 18:17:38] 2025-11-23 23:16:31,465 | INFO     | sum of deviations: 6635436331177.857
[2025-11-23 18:17:38] 2025-11-23 23:16:31,465 | INFO     | mean x: 1763881695.962165
[2025-11-23 18:17:38] 2025-11-23 23:16:31,465 | INFO     | mean y: 2977925.1229637414
[2025-11-23 18:17:38] 2025-11-23 23:16:31,465 | INFO     | intersect: -5474076061.144552
[2025-11-23 18:17:38] 2025-11-23 23:16:31,468 | INFO     | chi2: 8.1715023336487
[2025-11-23 18:17:38] 2025-11-23 23:16:31,468 | INFO     | current chi2=8.1715023336487 (change=27.631009635291083 %)
[2025-11-23 18:17:38] 2025-11-23 23:16:31,470 | INFO     | sum of square deviations: 2120138955235.211
[2025-11-23 18:17:38] 2025-11-23 23:16:31,559 | INFO     | sum of deviations: 6451620306623.463
[2025-11-23 18:17:38] 2025-11-23 23:16:31,560 | INFO     | mean x: 1763881848.4583771
[2025-11-23 18:17:38] 2025-11-23 23:16:31,560 | INFO     | mean y: 2979593.651211802
[2025-11-23 18:17:38] 2025-11-23 23:16:31,560 | INFO     | intersect: -5364544041.485286
[2025-11-23 18:17:38] 2025-11-23 23:16:31,562 | INFO     | chi2: 8.051746031351298
[2025-11-23 18:17:38] 2025-11-23 23:16:31,563 | INFO     | current chi2=8.051746031351298 (change=1.4655359248233728 %)
[2025-11-23 18:17:38] 2025-11-23 23:16:31,563 | INFO     | left removable region: 20
[2025-11-23 18:17:38] 2025-11-23 23:16:31,565 | INFO     | sum of square deviations: 2034200729583.8838
[2025-11-23 18:17:38] 2025-11-23 23:16:31,651 | INFO     | sum of deviations: 7783718063848.338
[2025-11-23 18:17:38] 2025-11-23 23:16:31,651 | INFO     | mean x: 1763881665.4919872
[2025-11-23 18:17:38] 2025-11-23 23:16:31,652 | INFO     | mean y: 2997529.155982906
[2025-11-23 18:17:38] 2025-11-23 23:16:31,652 | INFO     | intersect: -6746364705.607049
[2025-11-23 18:17:38] 2025-11-23 23:16:31,654 | INFO     | chi2: 0.6699887705257075
[2025-11-23 18:17:38] 2025-11-23 23:16:31,654 | INFO     | current memory leak: 3.83 B/s (using 1872 data points, chi2=0.67)
[2025-11-23 18:17:38] 2025-11-23 23:16:31,656 | INFO     | could have reported an average CPU frequency of 2600 MHz (66 samples)
[2025-11-23 18:17:38] 2025-11-23 23:16:31,656 | INFO     | ..............................
[2025-11-23 18:17:38] 2025-11-23 23:16:31,657 | INFO     | . Timing measurements:
[2025-11-23 18:17:38] 2025-11-23 23:16:31,657 | INFO     | . get job = 0 s
[2025-11-23 18:17:38] 2025-11-23 23:16:31,657 | INFO     | . initial setup = 3 s
[2025-11-23 18:17:38] 2025-11-23 23:16:31,657 | INFO     | . payload setup = 8 s
[2025-11-23 18:17:38] 2025-11-23 23:16:31,657 | INFO     | . stage-in = 0 s
[2025-11-23 18:17:38] 2025-11-23 23:16:31,657 | INFO     | . payload execution = 116389 s
[2025-11-23 18:17:38] 2025-11-23 23:16:31,657 | INFO     | . stage-out = 5 s
[2025-11-23 18:17:38] 2025-11-23 23:16:31,657 | INFO     | . log creation = 1 s
[2025-11-23 18:17:38] 2025-11-23 23:16:31,657 | INFO     | ..............................
[2025-11-23 18:17:38] 2025-11-23 23:16:31,777 | INFO     | 
[2025-11-23 18:17:38] 2025-11-23 23:16:31,777 | INFO     | job summary report
[2025-11-23 18:17:38] 2025-11-23 23:16:31,777 | INFO     | --------------------------------------------------
[2025-11-23 18:17:38] 2025-11-23 23:16:31,777 | INFO     | PanDA job id: 6893876823
[2025-11-23 18:17:38] 2025-11-23 23:16:31,777 | INFO     | task id: 47523449
[2025-11-23 18:17:38] 2025-11-23 23:16:31,777 | INFO     | errors: (none)
[2025-11-23 18:17:38] 2025-11-23 23:16:31,778 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 18:17:38] 2025-11-23 23:16:31,778 | INFO     | pilot state: finished 
[2025-11-23 18:17:38] 2025-11-23 23:16:31,778 | INFO     | transexitcode: 0
[2025-11-23 18:17:38] 2025-11-23 23:16:31,778 | INFO     | exeerrorcode: 0
[2025-11-23 18:17:38] 2025-11-23 23:16:31,778 | INFO     | exeerrordiag: 
[2025-11-23 18:17:38] 2025-11-23 23:16:31,778 | INFO     | exitcode: 0
[2025-11-23 18:17:38] 2025-11-23 23:16:31,778 | INFO     | exitmsg: OK
[2025-11-23 18:17:38] 2025-11-23 23:16:31,778 | INFO     | cpuconsumptiontime: 294265 s
[2025-11-23 18:17:38] 2025-11-23 23:16:31,778 | INFO     | nevents: 1000
[2025-11-23 18:17:38] 2025-11-23 23:16:31,779 | INFO     | neventsw: 0
[2025-11-23 18:17:38] 2025-11-23 23:16:31,779 | INFO     | pid: 532395
[2025-11-23 18:17:38] 2025-11-23 23:16:31,779 | INFO     | pgrp: 532395
[2025-11-23 18:17:38] 2025-11-23 23:16:31,779 | INFO     | corecount: 8
[2025-11-23 18:17:38] 2025-11-23 23:16:31,779 | INFO     | event service: False
[2025-11-23 18:17:38] 2025-11-23 23:16:31,779 | INFO     | sizes: {0: 2298585, 1: 2298784, 2: 2298784, 8: 2299074, 12: 2299102, 116398: 2376172, 116404: 2385222, 116430: 2385412}
[2025-11-23 18:17:38] 2025-11-23 23:16:31,779 | INFO     | --------------------------------------------------
[2025-11-23 18:17:38] 2025-11-23 23:16:31,779 | INFO     | 
[2025-11-23 18:17:38] 2025-11-23 23:16:31,779 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-23 18:17:38] 2025-11-23 23:16:31,843 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,844 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,844 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,844 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,844 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,844 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,844 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,844 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,844 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,845 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,845 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,845 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,845 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,845 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,845 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,845 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,845 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,845 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 18:17:38] 2025-11-23 23:16:31,845 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,846 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 18:17:38] 2025-11-23 23:16:31,846 | INFO     | job 6893876823 has completed (purged errors)
[2025-11-23 18:17:38] 2025-11-23 23:16:31,846 | INFO     | overall cleanup function is called
[2025-11-23 18:17:38] 2025-11-23 23:16:32,881 | INFO     | --- collectZombieJob: --- 10, [532395]
[2025-11-23 18:17:38] 2025-11-23 23:16:32,882 | INFO     | zombie collector waiting for pid 532395
[2025-11-23 18:17:38] 2025-11-23 23:16:32,882 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 18:17:38] 2025-11-23 23:16:32,882 | INFO     | collected zombie processes
[2025-11-23 18:17:38] 2025-11-23 23:16:32,882 | INFO     | will attempt to kill all subprocesses of pid=532395
[2025-11-23 18:17:38] 2025-11-23 23:16:33,558 | INFO     | process IDs to be killed: [532395] (in reverse order)
[2025-11-23 18:17:38] 2025-11-23 23:16:33,687 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 18:17:38] 2025-11-23 23:16:33,688 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 18:17:38] 2025-11-23 23:16:33,765 | INFO     | did not find any defunct processes belonging to 532395
[2025-11-23 18:17:38] 2025-11-23 23:16:33,781 | INFO     | did not find any defunct processes belonging to 532395
[2025-11-23 18:17:38] 2025-11-23 23:16:33,783 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 18:17:38] 2025-11-23 23:16:33,783 | INFO     | ready for new job
[2025-11-23 18:17:38] 2025-11-23 23:16:33,783 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 18:17:38] 2025-11-23 23:16:33,789 | INFO     | ***************************************
[2025-11-23 18:17:38] 2025-11-23 23:16:33,789 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 18:17:38] 2025-11-23 23:16:33,789 | INFO     | ***************************************
[2025-11-23 18:17:38] 2025-11-23 23:16:33,789 | INFO     | 
[2025-11-23 18:17:38] 2025-11-23 23:16:33,791 | INFO     | architecture information:
[2025-11-23 18:17:38] 2025-11-23 23:16:33,792 | INFO     | executing command: cat /etc/os-release
[2025-11-23 18:17:38] 2025-11-23 23:16:33,833 | INFO     | cat /etc/os-release:
[2025-11-23 18:17:38] NAME="CentOS Linux"
[2025-11-23 18:17:38] VERSION="7 (Core)"
[2025-11-23 18:17:38] ID="centos"
[2025-11-23 18:17:38] ID_LIKE="rhel fedora"
[2025-11-23 18:17:38] VERSION_ID="7"
[2025-11-23 18:17:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 18:17:38] ANSI_COLOR="0;31"
[2025-11-23 18:17:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 18:17:38] HOME_URL="https://www.centos.org/"
[2025-11-23 18:17:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 18:17:38] 
[2025-11-23 18:17:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 18:17:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 18:17:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 18:17:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 18:17:38] 
[2025-11-23 18:17:38] 2025-11-23 23:16:33,833 | INFO     | ***************************************
[2025-11-23 18:17:38] 2025-11-23 23:16:34,339 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-23 18:17:38] 2025-11-23 23:16:34,382 | INFO     | sufficient remaining disk space (71996276736 B)
[2025-11-23 18:17:38] 2025-11-23 23:16:34,383 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 18:17:38] 2025-11-23 23:16:34,383 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 18:17:38] 2025-11-23 23:16:34,383 | INFO     | update_server=False
[2025-11-23 18:17:38] 2025-11-23 23:16:34,383 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 18:17:38] 2025-11-23 23:16:34,383 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 18:17:38] 2025-11-23 23:16:34,384 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 18:17:38] 2025-11-23 23:16:34,384 | INFO     | aborting loop
[2025-11-23 18:17:38] 2025-11-23 23:16:35,141 | INFO     | all data control threads have been joined
[2025-11-23 18:17:38] 2025-11-23 23:16:35,144 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 18:17:38] 2025-11-23 23:16:35,290 | INFO     | all job control threads have been joined
[2025-11-23 18:17:38] 2025-11-23 23:16:35,390 | INFO     | [job] retrieve thread has finished
[2025-11-23 18:17:38] 2025-11-23 23:16:35,398 | INFO     | [job] job monitor thread has finished
[2025-11-23 18:17:38] 2025-11-23 23:16:35,476 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 18:17:38] 2025-11-23 23:16:35,787 | INFO     | all payload control threads have been joined
[2025-11-23 18:17:38] 2025-11-23 23:16:35,876 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 18:17:38] 2025-11-23 23:16:35,877 | INFO     | [payload] failed_post thread has finished
[2025-11-23 18:17:38] 2025-11-23 23:16:36,147 | INFO     | [data] control thread has finished
[2025-11-23 18:17:38] 2025-11-23 23:16:36,296 | INFO     | [job] control thread has finished
[2025-11-23 18:17:38] 2025-11-23 23:16:36,390 | INFO     | [data] copytool_out thread has finished
[2025-11-23 18:17:38] 2025-11-23 23:16:36,554 | INFO     | [payload] validate_post thread has finished
[2025-11-23 18:17:38] 2025-11-23 23:16:36,598 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 18:17:38] 2025-11-23 23:16:36,729 | INFO     | [job] validate thread has finished
[2025-11-23 18:17:38] 2025-11-23 23:16:36,774 | INFO     | [data] copytool_in thread has finished
[2025-11-23 18:17:38] 2025-11-23 23:16:36,793 | INFO     | [payload] control thread has finished
[2025-11-23 18:17:38] 2025-11-23 23:16:36,804 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 18:17:38] 2025-11-23 23:16:37,810 | INFO     | [job] queue monitor thread has finished
[2025-11-23 18:17:38] 2025-11-23 23:16:39,153 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 18:17:38] 2025-11-23 23:16:45,158 | INFO     | job.realtimelogging is not enabled
[2025-11-23 18:17:38] 2025-11-23 23:16:46,165 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 18:17:38] 2025-11-23 23:17:04,350 | INFO     | PID=525554 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 18:17:38] 2025-11-23 23:17:04,351 | INFO     | .. there are 39 such processes running
[2025-11-23 18:17:38] 2025-11-23 23:17:04,351 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 18:17:38] 2025-11-23 23:17:04,352 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 18:17:38] 2025-11-23 23:17:04,352 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 18:17:38] 2025-11-23 23:17:32,279 | INFO     | [monitor] cgroup control has ended
[2025-11-23 18:17:38] 2025-11-23 23:17:32,904 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140623626774336)>', '<ExcThread(monitor, started 140623000631040)>']
[2025-11-23 18:17:38] 2025-11-23 23:17:33,557 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 18:17:38] 2025-11-23 23:17:33,558 | INFO     | [monitor] control thread has ended
[2025-11-23 18:17:38] 2025-11-23 23:17:37,930 | INFO     | all workflow threads have been joined
[2025-11-23 18:17:38] 2025-11-23 23:17:37,930 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 18:17:38] 2025-11-23 23:17:37,930 | INFO     | traces error code: 0
[2025-11-23 18:17:38] 2025-11-23 23:17:37,931 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 18:17:38] 2025-11-23 23:17:38,157 [wrapper] ==== pilot stdout END ====
[2025-11-23 18:17:38] 2025-11-23 23:17:38,161 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 18:17:38] 2025-11-23 23:17:38,164 [wrapper] pilotpid: 525554
[2025-11-23 18:17:38] 2025-11-23 23:17:38,167 [wrapper] Pilot exit status: 0
[2025-11-23 18:17:38] 2025-11-23 23:17:38,222 [wrapper] pandaids: 6893876823 6893876823
[2025-11-23 18:17:38] 2025-11-23 23:17:38,411 [wrapper] cleanup supervisor_pilot 2815979 525555
[2025-11-23 18:17:38] 2025-11-23 23:17:38,452 [wrapper] Test setup, not cleaning
[2025-11-23 18:17:38] 2025-11-23 23:17:38,476 [wrapper] apfmon messages muted
[2025-11-23 18:17:38] 2025-11-23 23:17:38,486 [wrapper] ==== wrapper stdout END ====
[2025-11-23 18:17:38] 2025-11-23 23:17:38,521 [wrapper] ==== wrapper stderr END ====
[2025-11-23 18:17:38]  *** Error codes and diagnostics ***
[2025-11-23 18:17:38]     "exeErrorCode": 0,
[2025-11-23 18:17:38]     "exeErrorDiag": "",
[2025-11-23 18:17:38]     "pilotErrorCode": 0,
[2025-11-23 18:17:38]     "pilotErrorDiag": "",
[2025-11-23 18:17:38]  *** Listing of results directory ***
[2025-11-23 18:17:39] total 1721800
[2025-11-23 18:17:39] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-23 18:17:39] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 12:21 pilot3.tar.gz
[2025-11-23 18:17:39] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 12:51 queuedata.json
[2025-11-23 18:17:39] -rwx------. 1 boincer umatlas     36292 Nov 20 12:52 runpilot2-wrapper.sh
[2025-11-23 18:17:39] -rw-r--r--. 1 boincer umatlas       100 Nov 21 00:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 18:17:39] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 00:13 run_atlas
[2025-11-23 18:17:39] -rw-r--r--. 1 boincer umatlas       105 Nov 21 00:13 job.xml
[2025-11-23 18:17:39] -rw-r--r--. 3 boincer umatlas 407809221 Nov 21 00:13 EVNT.47493127._000776.pool.root.1
[2025-11-23 18:17:39] -rw-r--r--. 3 boincer umatlas 407809221 Nov 21 00:13 ATLAS.root_0
[2025-11-23 18:17:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:13 start_atlas.sh
[2025-11-23 18:17:39] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 00:13 shared
[2025-11-23 18:17:39] -rw-r--r--. 2 boincer umatlas    590102 Nov 21 00:13 input.tar.gz
[2025-11-23 18:17:39] -rw-r--r--. 1 boincer umatlas         0 Nov 21 00:13 boinc_lockfile
[2025-11-23 18:17:39] -rw-r--r--. 1 boincer umatlas      2785 Nov 22 09:55 pandaJob.out
[2025-11-23 18:17:39] -rw-------. 1 boincer umatlas        57 Nov 22 09:55 setup.sh.local
[2025-11-23 18:17:39] -rw-------. 1 boincer umatlas    989768 Nov 22 09:55 agis_schedconf.cvmfs.json
[2025-11-23 18:17:39] -rw-r--r--. 1 boincer umatlas       534 Nov 23 17:57 boinc_task_state.xml
[2025-11-23 18:17:39] -rw-r--r--. 1 boincer umatlas      6660 Nov 23 18:12 init_data.xml
[2025-11-23 18:17:39] -rw-------. 1 boincer umatlas 910888544 Nov 23 18:15 HITS.47523449._007754.pool.root.1
[2025-11-23 18:17:39] -rw-------. 1 boincer umatlas      1073 Nov 23 18:15 memory_monitor_summary.json
[2025-11-23 18:17:39] -rw-------. 1 boincer umatlas   1526164 Nov 23 18:16 agis_ddmendpoints.agis.ALL.json
[2025-11-23 18:17:39] -rw-------. 1 boincer umatlas   2710011 Nov 23 18:16 log.47523449._007754.job.log.tgz.1
[2025-11-23 18:17:39] -rw-------. 1 boincer umatlas      8653 Nov 23 18:16 heartbeat.json
[2025-11-23 18:17:39] -rw-------. 1 boincer umatlas        97 Nov 23 18:17 pilot_heartbeat.json
[2025-11-23 18:17:39] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 18:17 boinc_mmap_file
[2025-11-23 18:17:39] -rw-r--r--. 1 boincer umatlas        30 Nov 23 18:17 wrapper_checkpoint.txt
[2025-11-23 18:17:39] -rw-------. 1 boincer umatlas      4895 Nov 23 18:17 pilotlog.txt
[2025-11-23 18:17:39] -rw-------. 1 boincer umatlas  13634580 Nov 23 18:17 log.47523449._007754.job.log.1
[2025-11-23 18:17:39] -rw-------. 1 boincer umatlas       353 Nov 23 18:17 output.list
[2025-11-23 18:17:39] -rw-r--r--. 1 boincer umatlas       620 Nov 23 18:17 runtime_log
[2025-11-23 18:17:39] -rw-------. 1 boincer umatlas  16363520 Nov 23 18:17 result.tar.gz
[2025-11-23 18:17:39] -rw-r--r--. 1 boincer umatlas      9414 Nov 23 18:17 runtime_log.err
[2025-11-23 18:17:39] -rw-------. 1 boincer umatlas       790 Nov 23 18:17 n5vNDmg0Ng8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRNIKDmE3QoXn.diag
[2025-11-23 18:17:39] -rw-r--r--. 1 boincer umatlas     23375 Nov 23 18:17 stderr.txt
[2025-11-23 18:17:39] HITS file was successfully produced:
[2025-11-23 18:17:39] -rw-------. 1 boincer umatlas 910888544 Nov 23 18:15 shared/HITS.pool.root.1
[2025-11-23 18:17:39]  *** Contents of shared directory: ***
[2025-11-23 18:17:39] total 1304376
[2025-11-23 18:17:39] -rw-r--r--. 3 boincer umatlas 407809221 Nov 21 00:13 ATLAS.root_0
[2025-11-23 18:17:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:13 start_atlas.sh
[2025-11-23 18:17:39] -rw-r--r--. 2 boincer umatlas    590102 Nov 21 00:13 input.tar.gz
[2025-11-23 18:17:39] -rw-------. 1 boincer umatlas 910888544 Nov 23 18:15 HITS.pool.root.1
[2025-11-23 18:17:39] -rw-------. 1 boincer umatlas  16363520 Nov 23 18:17 result.tar.gz
18:17:40 (521786): run_atlas exited; CPU time 297485.312435
18:17:40 (521786): called boinc_finish(0)

</stderr_txt>
]]>

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