Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:30 (2978577): wrapper (7.7.26015): starting
00:03:30 (2978577): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 00:03:30] Arguments: --nthreads 8
[2025-11-21 00:03:30] Threads: 8
[2025-11-21 00:03:30] Checking for CVMFS
[2025-11-21 00:03:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:03:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:03:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:03:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:03:33] 2.13.3.0 12755 22398 209428 153108 3 151 28752983 40960000 15326 16776704 0 17308527 99.642 14721910 10739 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 00:03:33] CVMFS is ok
[2025-11-21 00:03:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:03:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:03:33] Further information can be found at the LHC@home message board.
[2025-11-21 00:03:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:03:33] Checking for apptainer binary...
[2025-11-21 00:03:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:03:33] Running /usr/bin/apptainer --version
[2025-11-21 00:03:33] apptainer version 1.4.4-1.el9
[2025-11-21 00:03:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:03:35] c7-10-13.aglt2.org
[2025-11-21 00:03:35] apptainer works
[2025-11-21 00:03:35] Set ATHENA_PROC_NUMBER=8
[2025-11-21 00:03:35] Set ATHENA_CORE_NUMBER=8
[2025-11-21 00:03:35] Starting ATLAS job with PandaID=6893877103
[2025-11-21 00:03:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 18:31:26]  *** The last 200 lines of the pilot log: ***
[2025-11-22 18:31:26] 2025-11-22 23:30:38,980 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 18:31:26] 2025-11-22 23:30:39,735 | INFO     | time since job start (152764s) is within the limit (172800.0s)
[2025-11-22 18:31:26] 2025-11-22 23:30:41,484 | INFO     | monitor loop #5809: job 0:6893877103 is in state 'finished'
[2025-11-22 18:31:26] 2025-11-22 23:30:41,484 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 18:31:26] 2025-11-22 23:30:41,741 | INFO     | time since job start (152766s) is within the limit (172800.0s)
[2025-11-22 18:31:26] 2025-11-22 23:30:43,951 | INFO     | PID=2986494 has CPU usage=16.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-22 18:31:26] 2025-11-22 23:30:43,952 | INFO     | .. there are 27 such processes running
[2025-11-22 18:31:26] 2025-11-22 23:30:43,992 | INFO     | monitor loop #5810: job 0:6893877103 is in state 'finished'
[2025-11-22 18:31:26] 2025-11-22 23:30:43,993 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 18:31:26] 2025-11-22 23:30:44,953 | INFO     | time since job start (152769s) is within the limit (172800.0s)
[2025-11-22 18:31:26] 2025-11-22 23:30:46,499 | INFO     | monitor loop #5811: job 0:6893877103 is in state 'finished'
[2025-11-22 18:31:26] 2025-11-22 23:30:46,499 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 18:31:26] 2025-11-22 23:30:46,969 | INFO     | time since job start (152771s) is within the limit (172800.0s)
[2025-11-22 18:31:26] 2025-11-22 23:30:47,040 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 18:31:26] 2025-11-22 23:30:47,054 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3292.306625
[2025-11-22 18:31:26] 2025-11-22 23:30:47,095 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6893877103/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 18:31:26] 2025-11-22 23:30:47,097 | INFO     | extracted standard info from prmon json
[2025-11-22 18:31:26] 2025-11-22 23:30:47,097 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 18:31:26] 2025-11-22 23:30:47,097 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 18:31:26] 2025-11-22 23:30:47,215 | INFO     | fitting pss+swap vs Time
[2025-11-22 18:31:26] 2025-11-22 23:30:47,224 | INFO     | sum of square deviations: 4857180923576.599
[2025-11-22 18:31:26] 2025-11-22 23:30:48,028 | INFO     | sum of deviations: 8485901732800.1455
[2025-11-22 18:31:26] 2025-11-22 23:30:48,029 | INFO     | mean x: 1763777887.7234213
[2025-11-22 18:31:26] 2025-11-22 23:30:48,029 | INFO     | mean y: 2938713.5883293366
[2025-11-22 18:31:26] 2025-11-22 23:30:48,029 | INFO     | intersect: -3078528925.604651
[2025-11-22 18:31:26] 2025-11-22 23:30:48,037 | INFO     | chi2: 38.24797893037786
[2025-11-22 18:31:26] 2025-11-22 23:30:48,043 | INFO     | sum of square deviations: 4828127741902.703
[2025-11-22 18:31:26] 2025-11-22 23:30:49,033 | INFO     | time since job start (152774s) is within the limit (172800.0s)
[2025-11-22 18:31:26] 2025-11-22 23:30:49,044 | INFO     | monitor loop #5812: job 0:6893877103 is in state 'finished'
[2025-11-22 18:31:26] 2025-11-22 23:30:49,045 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 18:31:26] 2025-11-22 23:30:49,290 | INFO     | sum of deviations: 9530744446981.25
[2025-11-22 18:31:26] 2025-11-22 23:30:49,291 | INFO     | mean x: 1763777735.2378855
[2025-11-22 18:31:26] 2025-11-22 23:30:49,291 | INFO     | mean y: 2944197.462555066
[2025-11-22 18:31:26] 2025-11-22 23:30:49,291 | INFO     | intersect: -3478760462.075511
[2025-11-22 18:31:26] 2025-11-22 23:30:49,295 | INFO     | chi2: 33.47530775381538
[2025-11-22 18:31:26] 2025-11-22 23:30:49,296 | INFO     | current chi2=33.47530775381538 (change=12.47823103346217 %)
[2025-11-22 18:31:26] 2025-11-22 23:30:49,296 | INFO     | right removable region: 2496
[2025-11-22 18:31:26] 2025-11-22 23:30:49,299 | INFO     | sum of square deviations: 4828116717372.707
[2025-11-22 18:31:26] 2025-11-22 23:30:50,027 | INFO     | sum of deviations: 7499350081490.034
[2025-11-22 18:31:26] 2025-11-22 23:30:50,028 | INFO     | mean x: 1763778040.2378855
[2025-11-22 18:31:26] 2025-11-22 23:30:50,028 | INFO     | mean y: 2943890.1581898276
[2025-11-22 18:31:26] 2025-11-22 23:30:50,029 | INFO     | intersect: -2736672768.6921983
[2025-11-22 18:31:26] 2025-11-22 23:30:50,037 | INFO     | chi2: 34.537785274593965
[2025-11-22 18:31:26] 2025-11-22 23:30:50,038 | INFO     | current chi2=34.537785274593965 (change=9.700365246847417 %)
[2025-11-22 18:31:26] 2025-11-22 23:30:50,039 | INFO     | left removable region: 10
[2025-11-22 18:31:26] 2025-11-22 23:30:50,046 | INFO     | sum of square deviations: 4764597184536.376
[2025-11-22 18:31:26] 2025-11-22 23:30:50,853 | INFO     | sum of deviations: 8069475069575.699
[2025-11-22 18:31:26] 2025-11-22 23:30:50,853 | INFO     | mean x: 1763778009.7699115
[2025-11-22 18:31:26] 2025-11-22 23:30:50,854 | INFO     | mean y: 2954123.0116653256
[2025-11-22 18:31:26] 2025-11-22 23:30:50,854 | INFO     | intersect: -2984237055.3521523
[2025-11-22 18:31:26] 2025-11-22 23:30:50,861 | INFO     | chi2: 27.121784135126116
[2025-11-22 18:31:26] 2025-11-22 23:30:50,862 | INFO     | current memory leak: 1.69 B/s (using 2486 data points, chi2=27.12)
[2025-11-22 18:31:26] 2025-11-22 23:30:50,866 | INFO     | could have reported an average CPU frequency of 3292 MHz (84 samples)
[2025-11-22 18:31:26] 2025-11-22 23:30:50,867 | INFO     | ..............................
[2025-11-22 18:31:26] 2025-11-22 23:30:50,867 | INFO     | . Timing measurements:
[2025-11-22 18:31:26] 2025-11-22 23:30:50,867 | INFO     | . get job = 0 s
[2025-11-22 18:31:26] 2025-11-22 23:30:50,867 | INFO     | . initial setup = 7 s
[2025-11-22 18:31:26] 2025-11-22 23:30:50,867 | INFO     | . payload setup = 30 s
[2025-11-22 18:31:26] 2025-11-22 23:30:50,868 | INFO     | . stage-in = 0 s
[2025-11-22 18:31:26] 2025-11-22 23:30:50,868 | INFO     | . payload execution = 152639 s
[2025-11-22 18:31:26] 2025-11-22 23:30:50,868 | INFO     | . stage-out = 13 s
[2025-11-22 18:31:26] 2025-11-22 23:30:50,868 | INFO     | . log creation = 3 s
[2025-11-22 18:31:26] 2025-11-22 23:30:50,868 | INFO     | ..............................
[2025-11-22 18:31:26] 2025-11-22 23:30:51,080 | INFO     | time since job start (152776s) is within the limit (172800.0s)
[2025-11-22 18:31:26] 2025-11-22 23:30:51,195 | INFO     | 
[2025-11-22 18:31:26] 2025-11-22 23:30:51,196 | INFO     | job summary report
[2025-11-22 18:31:26] 2025-11-22 23:30:51,197 | INFO     | --------------------------------------------------
[2025-11-22 18:31:26] 2025-11-22 23:30:51,197 | INFO     | PanDA job id: 6893877103
[2025-11-22 18:31:26] 2025-11-22 23:30:51,197 | INFO     | task id: 47523449
[2025-11-22 18:31:26] 2025-11-22 23:30:51,197 | INFO     | errors: (none)
[2025-11-22 18:31:26] 2025-11-22 23:30:51,197 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 18:31:26] 2025-11-22 23:30:51,197 | INFO     | pilot state: finished 
[2025-11-22 18:31:26] 2025-11-22 23:30:51,198 | INFO     | transexitcode: 0
[2025-11-22 18:31:26] 2025-11-22 23:30:51,198 | INFO     | exeerrorcode: 0
[2025-11-22 18:31:26] 2025-11-22 23:30:51,198 | INFO     | exeerrordiag: 
[2025-11-22 18:31:26] 2025-11-22 23:30:51,198 | INFO     | exitcode: 0
[2025-11-22 18:31:26] 2025-11-22 23:30:51,198 | INFO     | exitmsg: OK
[2025-11-22 18:31:26] 2025-11-22 23:30:51,198 | INFO     | cpuconsumptiontime: 615096 s
[2025-11-22 18:31:26] 2025-11-22 23:30:51,198 | INFO     | nevents: 1000
[2025-11-22 18:31:26] 2025-11-22 23:30:51,199 | INFO     | neventsw: 0
[2025-11-22 18:31:26] 2025-11-22 23:30:51,199 | INFO     | pid: 3014296
[2025-11-22 18:31:26] 2025-11-22 23:30:51,199 | INFO     | pgrp: 3014296
[2025-11-22 18:31:26] 2025-11-22 23:30:51,199 | INFO     | corecount: 8
[2025-11-22 18:31:26] 2025-11-22 23:30:51,199 | INFO     | event service: False
[2025-11-22 18:31:26] 2025-11-22 23:30:51,199 | INFO     | sizes: {0: 2298534, 1: 2298534, 2: 2298761, 14: 2298761, 25: 2298789, 26: 2299079, 36: 2299235, 152674: 2385679, 152675: 2385678, 152689: 2394728, 152691: 2394784,
[2025-11-22 18:31:26] 2025-11-22 23:30:51,200 | INFO     | --------------------------------------------------
[2025-11-22 18:31:26] 2025-11-22 23:30:51,200 | INFO     | 
[2025-11-22 18:31:26] 2025-11-22 23:30:51,228 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-22 18:31:26] 2025-11-22 23:30:51,474 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,475 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,475 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,475 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,475 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,475 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,476 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,476 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,476 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,476 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,476 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,476 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,477 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,477 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,519 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,519 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,520 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,520 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 18:31:26] 2025-11-22 23:30:51,520 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,520 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 18:31:26] 2025-11-22 23:30:51,521 | INFO     | job 6893877103 has completed (purged errors)
[2025-11-22 18:31:26] 2025-11-22 23:30:51,521 | INFO     | overall cleanup function is called
[2025-11-22 18:31:26] 2025-11-22 23:30:52,582 | INFO     | --- collectZombieJob: --- 10, [3014296]
[2025-11-22 18:31:26] 2025-11-22 23:30:52,583 | INFO     | zombie collector waiting for pid 3014296
[2025-11-22 18:31:26] 2025-11-22 23:30:52,583 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 18:31:26] 2025-11-22 23:30:52,583 | INFO     | collected zombie processes
[2025-11-22 18:31:26] 2025-11-22 23:30:52,583 | INFO     | will attempt to kill all subprocesses of pid=3014296
[2025-11-22 18:31:26] 2025-11-22 23:30:53,830 | INFO     | process IDs to be killed: [3014296] (in reverse order)
[2025-11-22 18:31:26] 2025-11-22 23:30:54,166 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 18:31:26] 2025-11-22 23:30:54,167 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 18:31:26] 2025-11-22 23:30:54,203 | INFO     | did not find any defunct processes belonging to 3014296
[2025-11-22 18:31:26] 2025-11-22 23:30:54,270 | INFO     | did not find any defunct processes belonging to 3014296
[2025-11-22 18:31:26] 2025-11-22 23:30:54,272 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 18:31:26] 2025-11-22 23:30:54,272 | INFO     | ready for new job
[2025-11-22 18:31:26] 2025-11-22 23:30:54,273 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 18:31:26] 2025-11-22 23:30:54,293 | INFO     | ***************************************
[2025-11-22 18:31:26] 2025-11-22 23:30:54,293 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 18:31:26] 2025-11-22 23:30:54,293 | INFO     | ***************************************
[2025-11-22 18:31:26] 2025-11-22 23:30:54,294 | INFO     | 
[2025-11-22 18:31:26] 2025-11-22 23:30:54,305 | INFO     | architecture information:
[2025-11-22 18:31:26] 2025-11-22 23:30:54,306 | INFO     | executing command: cat /etc/os-release
[2025-11-22 18:31:26] 2025-11-22 23:30:54,359 | INFO     | cat /etc/os-release:
[2025-11-22 18:31:26] NAME="CentOS Linux"
[2025-11-22 18:31:26] VERSION="7 (Core)"
[2025-11-22 18:31:26] ID="centos"
[2025-11-22 18:31:26] ID_LIKE="rhel fedora"
[2025-11-22 18:31:26] VERSION_ID="7"
[2025-11-22 18:31:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 18:31:26] ANSI_COLOR="0;31"
[2025-11-22 18:31:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 18:31:26] HOME_URL="https://www.centos.org/"
[2025-11-22 18:31:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 18:31:26] 
[2025-11-22 18:31:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 18:31:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 18:31:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 18:31:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 18:31:26] 
[2025-11-22 18:31:26] 2025-11-22 23:30:54,360 | INFO     | ***************************************
[2025-11-22 18:31:26] 2025-11-22 23:30:54,864 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-22 18:31:26] 2025-11-22 23:30:54,991 | INFO     | sufficient remaining disk space (79052144640 B)
[2025-11-22 18:31:26] 2025-11-22 23:30:54,992 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 18:31:26] 2025-11-22 23:30:54,993 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 18:31:26] 2025-11-22 23:30:54,993 | INFO     | update_server=False
[2025-11-22 18:31:26] 2025-11-22 23:30:54,993 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 18:31:26] 2025-11-22 23:30:54,994 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 18:31:26] 2025-11-22 23:30:55,082 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 18:31:26] 2025-11-22 23:30:55,095 | INFO     | aborting loop
[2025-11-22 18:31:26] 2025-11-22 23:30:55,155 | INFO     | all data control threads have been joined
[2025-11-22 18:31:26] 2025-11-22 23:30:55,979 | INFO     | all job control threads have been joined
[2025-11-22 18:31:26] 2025-11-22 23:30:56,022 | INFO     | [job] retrieve thread has finished
[2025-11-22 18:31:26] 2025-11-22 23:30:56,060 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 18:31:26] 2025-11-22 23:30:56,101 | INFO     | [job] job monitor thread has finished
[2025-11-22 18:31:26] 2025-11-22 23:30:56,162 | INFO     | [data] control thread has finished
[2025-11-22 18:31:26] 2025-11-22 23:30:56,223 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 18:31:26] 2025-11-22 23:30:56,395 | INFO     | [data] copytool_in thread has finished
[2025-11-22 18:31:26] 2025-11-22 23:30:56,491 | INFO     | all payload control threads have been joined
[2025-11-22 18:31:26] 2025-11-22 23:30:56,545 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 18:31:26] 2025-11-22 23:30:56,594 | INFO     | [payload] failed_post thread has finished
[2025-11-22 18:31:26] 2025-11-22 23:30:56,664 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 18:31:26] 2025-11-22 23:30:56,995 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 18:31:26] 2025-11-22 23:30:56,998 | INFO     | [job] validate thread has finished
[2025-11-22 18:31:26] 2025-11-22 23:30:57,000 | INFO     | [job] control thread has finished
[2025-11-22 18:31:26] 2025-11-22 23:30:57,019 | INFO     | [data] copytool_out thread has finished
[2025-11-22 18:31:26] 2025-11-22 23:30:57,026 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 18:31:26] 2025-11-22 23:30:57,166 | INFO     | [payload] validate_post thread has finished
[2025-11-22 18:31:26] 2025-11-22 23:30:57,230 | INFO     | [job] queue monitor thread has finished
[2025-11-22 18:31:26] 2025-11-22 23:30:57,497 | INFO     | [payload] control thread has finished
[2025-11-22 18:31:26] 2025-11-22 23:31:01,036 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 18:31:26] 2025-11-22 23:31:08,126 | INFO     | [monitor] cgroup control has ended
[2025-11-22 18:31:26] 2025-11-22 23:31:08,559 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140475413174080)>', '<ExcThread(monitor, started 140474908120832)>']
[2025-11-22 18:31:26] 2025-11-22 23:31:13,586 | INFO     | all workflow threads have been joined
[2025-11-22 18:31:26] 2025-11-22 23:31:13,587 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 18:31:26] 2025-11-22 23:31:13,587 | INFO     | traces error code: 0
[2025-11-22 18:31:26] 2025-11-22 23:31:13,588 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 18:31:26] 2025-11-22 23:31:25,130 | INFO     | PID=2986494 has CPU usage=11.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-22 18:31:26] 2025-11-22 23:31:25,130 | INFO     | .. there are 27 such processes running
[2025-11-22 18:31:26] 2025-11-22 23:31:25,132 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 18:31:26] 2025-11-22 23:31:25,132 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 18:31:26] 2025-11-22 23:31:25,132 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 18:31:26] 2025-11-22 23:31:25,132 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 18:31:26] 2025-11-22 23:31:25,133 | INFO     | [monitor] control thread has ended
[2025-11-22 18:31:26] 2025-11-22 23:31:25,545 [wrapper] ==== pilot stdout END ====
[2025-11-22 18:31:26] 2025-11-22 23:31:25,552 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 18:31:26] 2025-11-22 23:31:25,557 [wrapper] pilotpid: 2986494
[2025-11-22 18:31:26] 2025-11-22 23:31:25,562 [wrapper] Pilot exit status: 0
[2025-11-22 18:31:26] 2025-11-22 23:31:25,585 [wrapper] pandaids: 6893877103
[2025-11-22 18:31:26] 2025-11-22 23:31:25,804 [wrapper] cleanup supervisor_pilot 3259753 2986495
[2025-11-22 18:31:26] 2025-11-22 23:31:25,823 [wrapper] Test setup, not cleaning
[2025-11-22 18:31:26] 2025-11-22 23:31:25,835 [wrapper] apfmon messages muted
[2025-11-22 18:31:26] 2025-11-22 23:31:25,841 [wrapper] ==== wrapper stdout END ====
[2025-11-22 18:31:26] 2025-11-22 23:31:25,846 [wrapper] ==== wrapper stderr END ====
[2025-11-22 18:31:26]  *** Error codes and diagnostics ***
[2025-11-22 18:31:26]     "exeErrorCode": 0,
[2025-11-22 18:31:26]     "exeErrorDiag": "",
[2025-11-22 18:31:26]     "pilotErrorCode": 0,
[2025-11-22 18:31:26]     "pilotErrorDiag": "",
[2025-11-22 18:31:26]  *** Listing of results directory ***
[2025-11-22 18:31:26] total 1333688
[2025-11-22 18:31:26] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 13:04 pilot3.tar.gz
[2025-11-22 18:31:26] -rwx------. 1 boincer umatlas     36292 Nov 20 13:06 runpilot2-wrapper.sh
[2025-11-22 18:31:26] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 13:06 queuedata.json
[2025-11-22 18:31:26] -rw-r--r--. 1 boincer umatlas       100 Nov 21 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 18:31:26] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 00:03 run_atlas
[2025-11-22 18:31:26] -rw-r--r--. 1 boincer umatlas       105 Nov 21 00:03 job.xml
[2025-11-22 18:31:26] -rw-r--r--. 2 boincer umatlas 408450817 Nov 21 00:03 EVNT.47493127._000787.pool.root.1
[2025-11-22 18:31:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:03 start_atlas.sh
[2025-11-22 18:31:26] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 00:03 shared
[2025-11-22 18:31:26] -rw-r--r--. 2 boincer umatlas    590101 Nov 21 00:03 input.tar.gz
[2025-11-22 18:31:26] -rw-r--r--. 1 boincer umatlas         0 Nov 21 00:03 boinc_lockfile
[2025-11-22 18:31:26] -rw-r--r--. 1 boincer umatlas      2784 Nov 21 00:03 pandaJob.out
[2025-11-22 18:31:26] -rw-------. 1 boincer umatlas        57 Nov 21 00:03 setup.sh.local
[2025-11-22 18:31:26] -rw-------. 1 boincer umatlas    989817 Nov 21 00:04 agis_schedconf.cvmfs.json
[2025-11-22 18:31:26] drwx------. 5 boincer umatlas      4096 Nov 21 00:04 pilot3
[2025-11-22 18:31:26] -rw-r--r--. 1 boincer umatlas       534 Nov 22 17:41 boinc_task_state.xml
[2025-11-22 18:31:26] -rw-------. 1 boincer umatlas 918522173 Nov 22 18:02 HITS.47523449._007870.pool.root.1
[2025-11-22 18:31:26] -rw-r--r--. 1 boincer umatlas      6901 Nov 22 18:29 init_data.xml
[2025-11-22 18:31:26] -rw-------. 1 boincer umatlas      1046 Nov 22 18:30 memory_monitor_summary.json
[2025-11-22 18:31:26] -rw-------. 1 boincer umatlas   1526164 Nov 22 18:30 agis_ddmendpoints.agis.ALL.json
[2025-11-22 18:31:26] -rw-------. 1 boincer umatlas   2920852 Nov 22 18:30 log.47523449._007870.job.log.tgz.1
[2025-11-22 18:31:26] -rw-------. 1 boincer umatlas      8594 Nov 22 18:30 heartbeat.json
[2025-11-22 18:31:26] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 18:31 boinc_mmap_file
[2025-11-22 18:31:26] -rw-r--r--. 1 boincer umatlas        30 Nov 22 18:31 wrapper_checkpoint.txt
[2025-11-22 18:31:26] -rw-------. 1 boincer umatlas        96 Nov 22 18:31 pilot_heartbeat.json
[2025-11-22 18:31:26] -rw-------. 1 boincer umatlas       824 Nov 22 18:31 pilotlog.txt
[2025-11-22 18:31:26] -rw-------. 1 boincer umatlas  14476890 Nov 22 18:31 log.47523449._007870.job.log.1
[2025-11-22 18:31:26] -rw-------. 1 boincer umatlas       353 Nov 22 18:31 output.list
[2025-11-22 18:31:26] -rw-r--r--. 1 boincer umatlas       620 Nov 22 18:31 runtime_log
[2025-11-22 18:31:26] -rw-------. 1 boincer umatlas  17418240 Nov 22 18:31 result.tar.gz
[2025-11-22 18:31:26] -rw-r--r--. 1 boincer umatlas      9344 Nov 22 18:31 runtime_log.err
[2025-11-22 18:31:26] -rw-------. 1 boincer umatlas       664 Nov 22 18:31 aooKDmdEOg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8NIKDmLOh34m.diag
[2025-11-22 18:31:26] -rw-r--r--. 1 boincer umatlas     21898 Nov 22 18:31 stderr.txt
[2025-11-22 18:31:26] HITS file was successfully produced:
[2025-11-22 18:31:26] -rw-------. 1 boincer umatlas 918522173 Nov 22 18:02 shared/HITS.pool.root.1
[2025-11-22 18:31:26]  *** Contents of shared directory: ***
[2025-11-22 18:31:26] total 1313492
[2025-11-22 18:31:26] -rw-r--r--. 2 boincer umatlas 408450817 Nov 21 00:03 ATLAS.root_0
[2025-11-22 18:31:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:03 start_atlas.sh
[2025-11-22 18:31:26] -rw-r--r--. 2 boincer umatlas    590101 Nov 21 00:03 input.tar.gz
[2025-11-22 18:31:26] -rw-------. 1 boincer umatlas 918522173 Nov 22 18:02 HITS.pool.root.1
[2025-11-22 18:31:26] -rw-------. 1 boincer umatlas  17418240 Nov 22 18:31 result.tar.gz
18:31:27 (2978577): run_atlas exited; CPU time 616319.711665
18:31:27 (2978577): called boinc_finish(0)

</stderr_txt>
]]>

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