Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:03:42 (2938775): wrapper (7.7.26015): starting
04:03:42 (2938775): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 04:03:42] Arguments: --nthreads 9
[2025-11-21 04:03:42] Threads: 9
[2025-11-21 04:03:42] Checking for CVMFS
[2025-11-21 04:03:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 04:03:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 04:03:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 04:03:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 04:03:43] 2.13.2.0 9630 26436 196604 153115 3 3 34359349 39288833 3817 16776704 0 13921702 99.577 11194894 25984 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 04:03:43] CVMFS is ok
[2025-11-21 04:03:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 04:03:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 04:03:43] Further information can be found at the LHC@home message board.
[2025-11-21 04:03:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 04:03:43] Checking for apptainer binary...
[2025-11-21 04:03:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 04:03:43] Running /usr/bin/apptainer --version
[2025-11-21 04:03:43] apptainer version 1.4.4-1.el9
[2025-11-21 04:03:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 04:03:43] c-211-17.aglt2.org
[2025-11-21 04:03:43] apptainer works
[2025-11-21 04:03:43] Set ATHENA_PROC_NUMBER=9
[2025-11-21 04:03:43] Set ATHENA_CORE_NUMBER=9
[2025-11-21 04:03:43] Starting ATLAS job with PandaID=6893836282
[2025-11-21 04:03:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 16:18:27]  *** The last 200 lines of the pilot log: ***
[2025-11-21 16:18:28] 2025-11-21 21:17:31,653 | INFO     | PID=2942442 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 16:18:28] 2025-11-21 21:17:31,654 | INFO     | .. there are 10 such processes running
[2025-11-21 16:18:28] 2025-11-21 21:17:32,196 | INFO     | monitor loop #2897: job 0:6893836282 is in state 'finished'
[2025-11-21 16:18:28] 2025-11-21 21:17:32,197 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 16:18:28] 2025-11-21 21:17:32,656 | INFO     | time since job start (44019s) is within the limit (172800.0s)
[2025-11-21 16:18:28] 2025-11-21 21:17:34,666 | INFO     | time since job start (44021s) is within the limit (172800.0s)
[2025-11-21 16:18:28] 2025-11-21 21:17:34,755 | INFO     | monitor loop #2898: job 0:6893836282 is in state 'finished'
[2025-11-21 16:18:28] 2025-11-21 21:17:34,756 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 16:18:28] 2025-11-21 21:17:36,672 | INFO     | time since job start (44023s) is within the limit (172800.0s)
[2025-11-21 16:18:28] 2025-11-21 21:17:37,314 | INFO     | monitor loop #2899: job 0:6893836282 is in state 'finished'
[2025-11-21 16:18:28] 2025-11-21 21:17:37,337 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 16:18:28] 2025-11-21 21:17:38,679 | INFO     | time since job start (44025s) is within the limit (172800.0s)
[2025-11-21 16:18:28] 2025-11-21 21:17:39,850 | INFO     | monitor loop #2900: job 0:6893836282 is in state 'finished'
[2025-11-21 16:18:28] 2025-11-21 21:17:39,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 16:18:28] 2025-11-21 21:17:40,686 | INFO     | time since job start (44027s) is within the limit (172800.0s)
[2025-11-21 16:18:28] 2025-11-21 21:17:40,700 | INFO     | 44029s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-21 16:18:28] 2025-11-21 21:17:41,011 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 16:18:28] 2025-11-21 21:17:41,023 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.87715
[2025-11-21 16:18:28] 2025-11-21 21:17:41,040 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6893836282/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 16:18:28] 2025-11-21 21:17:41,041 | INFO     | extracted standard info from prmon json
[2025-11-21 16:18:28] 2025-11-21 21:17:41,041 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 16:18:28] 2025-11-21 21:17:41,042 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 16:18:28] 2025-11-21 21:17:41,068 | INFO     | fitting pss+swap vs Time
[2025-11-21 16:18:28] 2025-11-21 21:17:41,080 | INFO     | sum of square deviations: 115326949361.0766
[2025-11-21 16:18:28] 2025-11-21 21:17:41,121 | INFO     | sum of deviations: 219968265473.5454
[2025-11-21 16:18:28] 2025-11-21 21:17:41,121 | INFO     | mean x: 1763737760.8511822
[2025-11-21 16:18:28] 2025-11-21 21:17:41,122 | INFO     | mean y: 3076161.5938803894
[2025-11-21 16:18:28] 2025-11-21 21:17:41,122 | INFO     | intersect: -3360980012.214615
[2025-11-21 16:18:28] 2025-11-21 21:17:41,131 | INFO     | chi2: 20.526287312755702
[2025-11-21 16:18:28] 2025-11-21 21:17:41,133 | INFO     | sum of square deviations: 112939831213.1557
[2025-11-21 16:18:28] 2025-11-21 21:17:41,357 | INFO     | sum of deviations: 533475778106.51733
[2025-11-21 16:18:28] 2025-11-21 21:17:41,410 | INFO     | mean x: 1763737608.3739495
[2025-11-21 16:18:28] 2025-11-21 21:17:41,410 | INFO     | mean y: 3096187.18907563
[2025-11-21 16:18:28] 2025-11-21 21:17:41,410 | INFO     | intersect: -8327988452.269987
[2025-11-21 16:18:28] 2025-11-21 21:17:41,411 | INFO     | chi2: 15.460034307034412
[2025-11-21 16:18:28] 2025-11-21 21:17:41,411 | INFO     | current chi2=15.460034307034412 (change=24.681779654194724 %)
[2025-11-21 16:18:28] 2025-11-21 21:17:41,411 | INFO     | right removable region: 713
[2025-11-21 16:18:28] 2025-11-21 21:17:41,413 | INFO     | sum of square deviations: 112938317667.6542
[2025-11-21 16:18:28] 2025-11-21 21:17:41,731 | INFO     | sum of deviations: 27701631113.03515
[2025-11-21 16:18:28] 2025-11-21 21:17:41,731 | INFO     | mean x: 1763737913.3767507
[2025-11-21 16:18:28] 2025-11-21 21:17:41,732 | INFO     | mean y: 3088414.4719887953
[2025-11-21 16:18:28] 2025-11-21 21:17:41,732 | INFO     | intersect: -429523103.61537737
[2025-11-21 16:18:28] 2025-11-21 21:17:41,733 | INFO     | chi2: 18.704553835307166
[2025-11-21 16:18:28] 2025-11-21 21:17:41,733 | INFO     | current chi2=18.704553835307166 (change=8.875124125912686 %)
[2025-11-21 16:18:28] 2025-11-21 21:17:41,734 | INFO     | left removable region: 10
[2025-11-21 16:18:28] 2025-11-21 21:17:41,786 | INFO     | sum of square deviations: 107801915490.15381
[2025-11-21 16:18:28] 2025-11-21 21:17:42,147 | INFO     | sum of deviations: 354354078364.6954
[2025-11-21 16:18:28] 2025-11-21 21:17:42,147 | INFO     | mean x: 1763737882.9260314
[2025-11-21 16:18:28] 2025-11-21 21:17:42,148 | INFO     | mean y: 3115864.109530583
[2025-11-21 16:18:28] 2025-11-21 21:17:42,148 | INFO     | intersect: -5794440785.412497
[2025-11-21 16:18:28] 2025-11-21 21:17:42,149 | INFO     | chi2: 12.58741327693376
[2025-11-21 16:18:28] 2025-11-21 21:17:42,198 | INFO     | current memory leak: 3.29 B/s (using 703 data points, chi2=12.59)
[2025-11-21 16:18:28] 2025-11-21 21:17:42,199 | INFO     | could have reported an average CPU frequency of 2599 MHz (28 samples)
[2025-11-21 16:18:28] 2025-11-21 21:17:42,199 | INFO     | ..............................
[2025-11-21 16:18:28] 2025-11-21 21:17:42,199 | INFO     | . Timing measurements:
[2025-11-21 16:18:28] 2025-11-21 21:17:42,199 | INFO     | . get job = 0 s
[2025-11-21 16:18:28] 2025-11-21 21:17:42,199 | INFO     | . initial setup = 2 s
[2025-11-21 16:18:28] 2025-11-21 21:17:42,200 | INFO     | . payload setup = 5 s
[2025-11-21 16:18:28] 2025-11-21 21:17:42,200 | INFO     | . stage-in = 0 s
[2025-11-21 16:18:28] 2025-11-21 21:17:42,200 | INFO     | . payload execution = 43838 s
[2025-11-21 16:18:28] 2025-11-21 21:17:42,200 | INFO     | . stage-out = 87 s
[2025-11-21 16:18:28] 2025-11-21 21:17:42,200 | INFO     | . log creation = 14 s
[2025-11-21 16:18:28] 2025-11-21 21:17:42,200 | INFO     | ..............................
[2025-11-21 16:18:28] 2025-11-21 21:17:43,071 | INFO     | time since job start (44030s) is within the limit (172800.0s)
[2025-11-21 16:18:28] 2025-11-21 21:17:43,828 | INFO     | 
[2025-11-21 16:18:28] 2025-11-21 21:17:43,829 | INFO     | job summary report
[2025-11-21 16:18:28] 2025-11-21 21:17:43,829 | INFO     | --------------------------------------------------
[2025-11-21 16:18:28] 2025-11-21 21:17:43,829 | INFO     | PanDA job id: 6893836282
[2025-11-21 16:18:28] 2025-11-21 21:17:43,829 | INFO     | task id: 47523449
[2025-11-21 16:18:28] 2025-11-21 21:17:43,829 | INFO     | errors: (none)
[2025-11-21 16:18:28] 2025-11-21 21:17:43,829 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 16:18:28] 2025-11-21 21:17:43,829 | INFO     | pilot state: finished 
[2025-11-21 16:18:28] 2025-11-21 21:17:43,829 | INFO     | transexitcode: 0
[2025-11-21 16:18:28] 2025-11-21 21:17:43,829 | INFO     | exeerrorcode: 0
[2025-11-21 16:18:28] 2025-11-21 21:17:43,830 | INFO     | exeerrordiag: 
[2025-11-21 16:18:28] 2025-11-21 21:17:43,830 | INFO     | exitcode: 0
[2025-11-21 16:18:28] 2025-11-21 21:17:43,830 | INFO     | exitmsg: OK
[2025-11-21 16:18:28] 2025-11-21 21:17:43,830 | INFO     | cpuconsumptiontime: 285683 s
[2025-11-21 16:18:28] 2025-11-21 21:17:43,830 | INFO     | nevents: 1000
[2025-11-21 16:18:28] 2025-11-21 21:17:43,830 | INFO     | neventsw: 0
[2025-11-21 16:18:28] 2025-11-21 21:17:43,830 | INFO     | pid: 2948869
[2025-11-21 16:18:28] 2025-11-21 21:17:43,830 | INFO     | pgrp: 2948869
[2025-11-21 16:18:28] 2025-11-21 21:17:43,830 | INFO     | corecount: 9
[2025-11-21 16:18:28] 2025-11-21 21:17:43,830 | INFO     | event service: False
[2025-11-21 16:18:28] 2025-11-21 21:17:43,830 | INFO     | sizes: {0: 2298807, 1: 2298807, 4: 2299097, 11: 2299125, 43849: 2344292, 43851: 2344291, 43942: 2353743, 43943: 2353799, 44015: 2353823}
[2025-11-21 16:18:28] 2025-11-21 21:17:43,831 | INFO     | --------------------------------------------------
[2025-11-21 16:18:28] 2025-11-21 21:17:43,831 | INFO     | 
[2025-11-21 16:18:28] 2025-11-21 21:17:43,831 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-21 16:18:28] 2025-11-21 21:17:43,923 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,924 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,924 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,924 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,924 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,924 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,924 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,925 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,925 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,925 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,925 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,925 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,925 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,925 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,925 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,925 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,926 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,926 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 16:18:28] 2025-11-21 21:17:43,926 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,926 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 16:18:28] 2025-11-21 21:17:43,970 | INFO     | job 6893836282 has completed (purged errors)
[2025-11-21 16:18:28] 2025-11-21 21:17:43,971 | INFO     | overall cleanup function is called
[2025-11-21 16:18:28] 2025-11-21 21:17:45,154 | INFO     | --- collectZombieJob: --- 10, [2948869]
[2025-11-21 16:18:28] 2025-11-21 21:17:45,155 | INFO     | zombie collector waiting for pid 2948869
[2025-11-21 16:18:28] 2025-11-21 21:17:45,155 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 16:18:28] 2025-11-21 21:17:45,155 | INFO     | collected zombie processes
[2025-11-21 16:18:28] 2025-11-21 21:17:45,155 | INFO     | will attempt to kill all subprocesses of pid=2948869
[2025-11-21 16:18:28] 2025-11-21 21:17:48,608 | INFO     | process IDs to be killed: [2948869] (in reverse order)
[2025-11-21 16:18:28] 2025-11-21 21:17:49,760 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 16:18:28] 2025-11-21 21:17:49,761 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 16:18:28] 2025-11-21 21:17:49,824 | INFO     | did not find any defunct processes belonging to 2948869
[2025-11-21 16:18:28] 2025-11-21 21:17:49,983 | INFO     | did not find any defunct processes belonging to 2948869
[2025-11-21 16:18:28] 2025-11-21 21:17:50,022 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 16:18:28] 2025-11-21 21:17:50,023 | INFO     | ready for new job
[2025-11-21 16:18:28] 2025-11-21 21:17:50,023 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 16:18:28] 2025-11-21 21:17:50,075 | INFO     | ***************************************
[2025-11-21 16:18:28] 2025-11-21 21:17:50,075 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 16:18:28] 2025-11-21 21:17:50,075 | INFO     | ***************************************
[2025-11-21 16:18:28] 2025-11-21 21:17:50,075 | INFO     | 
[2025-11-21 16:18:28] 2025-11-21 21:17:50,197 | INFO     | architecture information:
[2025-11-21 16:18:28] 2025-11-21 21:17:50,249 | INFO     | executing command: cat /etc/os-release
[2025-11-21 16:18:28] 2025-11-21 21:17:50,480 | INFO     | cat /etc/os-release:
[2025-11-21 16:18:28] NAME="CentOS Linux"
[2025-11-21 16:18:28] VERSION="7 (Core)"
[2025-11-21 16:18:28] ID="centos"
[2025-11-21 16:18:28] ID_LIKE="rhel fedora"
[2025-11-21 16:18:28] VERSION_ID="7"
[2025-11-21 16:18:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 16:18:28] ANSI_COLOR="0;31"
[2025-11-21 16:18:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 16:18:28] HOME_URL="https://www.centos.org/"
[2025-11-21 16:18:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 16:18:28] 
[2025-11-21 16:18:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 16:18:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 16:18:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 16:18:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 16:18:28] 
[2025-11-21 16:18:28] 2025-11-21 21:17:50,481 | INFO     | ***************************************
[2025-11-21 16:18:28] 2025-11-21 21:17:50,985 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-21 16:18:28] 2025-11-21 21:17:51,450 | INFO     | sufficient remaining disk space (48438968320 B)
[2025-11-21 16:18:28] 2025-11-21 21:17:51,450 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 16:18:28] 2025-11-21 21:17:51,450 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 16:18:28] 2025-11-21 21:17:51,451 | INFO     | update_server=False
[2025-11-21 16:18:28] 2025-11-21 21:17:51,451 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 16:18:28] 2025-11-21 21:17:51,451 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 16:18:28] 2025-11-21 21:17:51,451 | INFO     | aborting loop
[2025-11-21 16:18:28] 2025-11-21 21:17:51,455 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 16:18:28] 2025-11-21 21:17:51,686 | INFO     | all payload control threads have been joined
[2025-11-21 16:18:28] 2025-11-21 21:17:51,727 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 16:18:28] 2025-11-21 21:17:52,220 | INFO     | all data control threads have been joined
[2025-11-21 16:18:28] 2025-11-21 21:17:52,459 | INFO     | [job] job monitor thread has finished
[2025-11-21 16:18:28] 2025-11-21 21:17:52,473 | INFO     | [job] retrieve thread has finished
[2025-11-21 16:18:28] 2025-11-21 21:17:52,497 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 16:18:28] 2025-11-21 21:17:52,705 | INFO     | all job control threads have been joined
[2025-11-21 16:18:28] 2025-11-21 21:17:52,714 | INFO     | [payload] control thread has finished
[2025-11-21 16:18:28] 2025-11-21 21:17:52,733 | INFO     | [job] validate thread has finished
[2025-11-21 16:18:28] 2025-11-21 21:17:52,832 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 16:18:28] 2025-11-21 21:17:52,846 | INFO     | [data] copytool_in thread has finished
[2025-11-21 16:18:28] 2025-11-21 21:17:52,861 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 16:18:28] 2025-11-21 21:17:52,978 | INFO     | [payload] failed_post thread has finished
[2025-11-21 16:18:28] 2025-11-21 21:17:52,979 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 16:18:28] 2025-11-21 21:17:52,993 | INFO     | [payload] validate_post thread has finished
[2025-11-21 16:18:28] 2025-11-21 21:17:53,244 | INFO     | [data] control thread has finished
[2025-11-21 16:18:28] 2025-11-21 21:17:53,462 | INFO     | [data] copytool_out thread has finished
[2025-11-21 16:18:28] 2025-11-21 21:17:53,718 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 16:18:28] 2025-11-21 21:17:53,719 | INFO     | [job] control thread has finished
[2025-11-21 16:18:28] 2025-11-21 21:17:53,985 | INFO     | [job] queue monitor thread has finished
[2025-11-21 16:18:28] 2025-11-21 21:17:55,757 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 16:18:28] 2025-11-21 21:18:13,844 | INFO     | [monitor] cgroup control has ended
[2025-11-21 16:18:28] 2025-11-21 21:18:15,000 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140332197873472)>', '<ExcThread(monitor, started 140331832022784)>']
[2025-11-21 16:18:28] 2025-11-21 21:18:20,081 | INFO     | all workflow threads have been joined
[2025-11-21 16:18:28] 2025-11-21 21:18:20,082 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 16:18:28] 2025-11-21 21:18:20,082 | INFO     | traces error code: 0
[2025-11-21 16:18:28] 2025-11-21 21:18:20,083 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 16:18:28] 2025-11-21 21:18:21,908 | INFO     | PID=2942442 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 16:18:28] 2025-11-21 21:18:21,909 | INFO     | .. there are 10 such processes running
[2025-11-21 16:18:28] 2025-11-21 21:18:21,909 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 16:18:28] 2025-11-21 21:18:21,909 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 16:18:28] 2025-11-21 21:18:21,910 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 16:18:28] 2025-11-21 21:18:21,910 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 16:18:28] 2025-11-21 21:18:21,910 | INFO     | [monitor] control thread has ended
[2025-11-21 16:18:28] 2025-11-21 21:18:24,194 [wrapper] ==== pilot stdout END ====
[2025-11-21 16:18:28] 2025-11-21 21:18:24,258 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 16:18:28] 2025-11-21 21:18:24,348 [wrapper] pilotpid: 2942442
[2025-11-21 16:18:28] 2025-11-21 21:18:24,412 [wrapper] Pilot exit status: 0
[2025-11-21 16:18:28] 2025-11-21 21:18:24,604 [wrapper] pandaids: 6893836282
[2025-11-21 16:18:28] 2025-11-21 21:18:25,476 [wrapper] cleanup supervisor_pilot 4158414 2942443
[2025-11-21 16:18:28] 2025-11-21 21:18:25,531 [wrapper] Test setup, not cleaning
[2025-11-21 16:18:28] 2025-11-21 21:18:25,582 [wrapper] apfmon messages muted
[2025-11-21 16:18:28] 2025-11-21 21:18:25,631 [wrapper] ==== wrapper stdout END ====
[2025-11-21 16:18:28] 2025-11-21 21:18:25,681 [wrapper] ==== wrapper stderr END ====
[2025-11-21 16:18:28]  *** Error codes and diagnostics ***
[2025-11-21 16:18:28]     "exeErrorCode": 0,
[2025-11-21 16:18:28]     "exeErrorDiag": "",
[2025-11-21 16:18:28]     "pilotErrorCode": 0,
[2025-11-21 16:18:28]     "pilotErrorDiag": "",
[2025-11-21 16:18:28]  *** Listing of results directory ***
[2025-11-21 16:18:28] total 1320212
[2025-11-21 16:18:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-21 16:18:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:17 queuedata.json
[2025-11-21 16:18:28] -rwx------. 1 boincer umatlas     36292 Nov 20 05:18 runpilot2-wrapper.sh
[2025-11-21 16:18:28] -rw-r--r--. 1 boincer umatlas       100 Nov 21 04:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 16:18:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 04:03 run_atlas
[2025-11-21 16:18:28] -rw-r--r--. 1 boincer umatlas       105 Nov 21 04:03 job.xml
[2025-11-21 16:18:28] -rw-r--r--. 2 boincer umatlas 410167581 Nov 21 04:03 EVNT.47493127._000101.pool.root.1
[2025-11-21 16:18:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 04:03 start_atlas.sh
[2025-11-21 16:18:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 04:03 shared
[2025-11-21 16:18:28] -rw-r--r--. 2 boincer umatlas    590102 Nov 21 04:03 input.tar.gz
[2025-11-21 16:18:28] -rw-r--r--. 1 boincer umatlas         0 Nov 21 04:03 boinc_lockfile
[2025-11-21 16:18:28] -rw-r--r--. 1 boincer umatlas      2786 Nov 21 04:03 pandaJob.out
[2025-11-21 16:18:28] -rw-------. 1 boincer umatlas        57 Nov 21 04:03 setup.sh.local
[2025-11-21 16:18:28] -rw-------. 1 boincer umatlas    989817 Nov 21 04:03 agis_schedconf.cvmfs.json
[2025-11-21 16:18:28] drwx------. 5 boincer umatlas      4096 Nov 21 04:03 pilot3
[2025-11-21 16:18:28] -rw-r--r--. 1 boincer umatlas       533 Nov 21 15:45 boinc_task_state.xml
[2025-11-21 16:18:28] -rw-------. 1 boincer umatlas 922051420 Nov 21 16:06 HITS.47523449._001006.pool.root.1
[2025-11-21 16:18:28] -rw-------. 1 boincer umatlas      1056 Nov 21 16:14 memory_monitor_summary.json
[2025-11-21 16:18:28] -rw-------. 1 boincer umatlas   1526164 Nov 21 16:15 agis_ddmendpoints.agis.ALL.json
[2025-11-21 16:18:28] -rw-------. 1 boincer umatlas   2060849 Nov 21 16:16 log.47523449._001006.job.log.tgz.1
[2025-11-21 16:18:28] -rw-------. 1 boincer umatlas        95 Nov 21 16:17 pilot_heartbeat.json
[2025-11-21 16:18:28] -rw-------. 1 boincer umatlas      8625 Nov 21 16:17 heartbeat.json
[2025-11-21 16:18:28] -rw-r--r--. 1 boincer umatlas      6658 Nov 21 16:18 init_data.xml
[2025-11-21 16:18:28] -rw-------. 1 boincer umatlas       823 Nov 21 16:18 pilotlog.txt
[2025-11-21 16:18:28] -rw-r--r--. 1 boincer umatlas        29 Nov 21 16:18 wrapper_checkpoint.txt
[2025-11-21 16:18:28] -rw-------. 1 boincer umatlas   5813107 Nov 21 16:18 log.47523449._001006.job.log.1
[2025-11-21 16:18:28] -rw-------. 1 boincer umatlas       353 Nov 21 16:18 output.list
[2025-11-21 16:18:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 16:18 boinc_mmap_file
[2025-11-21 16:18:28] -rw-r--r--. 1 boincer umatlas       620 Nov 21 16:18 runtime_log
[2025-11-21 16:18:28] -rw-------. 1 boincer umatlas   7895040 Nov 21 16:18 result.tar.gz
[2025-11-21 16:18:28] -rw-r--r--. 1 boincer umatlas      9343 Nov 21 16:18 runtime_log.err
[2025-11-21 16:18:28] -rw-------. 1 boincer umatlas       660 Nov 21 16:18 DZ5MDm2uGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvHHKDmtS77Zm.diag
[2025-11-21 16:18:28] -rw-r--r--. 1 boincer umatlas     21858 Nov 21 16:18 stderr.txt
[2025-11-21 16:18:28] HITS file was successfully produced:
[2025-11-21 16:18:28] -rw-------. 1 boincer umatlas 922051420 Nov 21 16:06 shared/HITS.pool.root.1
[2025-11-21 16:18:28]  *** Contents of shared directory: ***
[2025-11-21 16:18:28] total 1309316
[2025-11-21 16:18:28] -rw-r--r--. 2 boincer umatlas 410167581 Nov 21 04:03 ATLAS.root_0
[2025-11-21 16:18:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 04:03 start_atlas.sh
[2025-11-21 16:18:28] -rw-r--r--. 2 boincer umatlas    590102 Nov 21 04:03 input.tar.gz
[2025-11-21 16:18:28] -rw-------. 1 boincer umatlas 922051420 Nov 21 16:06 HITS.pool.root.1
[2025-11-21 16:18:28] -rw-------. 1 boincer umatlas   7895040 Nov 21 16:18 result.tar.gz
16:18:29 (2938775): run_atlas exited; CPU time 286219.823874
16:18:29 (2938775): called boinc_finish(0)

</stderr_txt>
]]>

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