Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:04 (4073205): wrapper (7.7.26015): starting
00:03:04 (4073205): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 00:03:04] Arguments: --nthreads 9
[2025-11-21 00:03:04] Threads: 9
[2025-11-21 00:03:04] Checking for CVMFS
[2025-11-21 00:03:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:03:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:03:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:03:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:03:06] 2.13.3.0 11601 22404 224332 153108 1 349 18465307 32935937 13185 16776704 0 82706420 99.505 100061057 38199 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 00:03:06] CVMFS is ok
[2025-11-21 00:03:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:03:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:03:06] Further information can be found at the LHC@home message board.
[2025-11-21 00:03:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:03:06] Checking for apptainer binary...
[2025-11-21 00:03:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:03:06] Running /usr/bin/apptainer --version
[2025-11-21 00:03:06] apptainer version 1.4.4-1.el9
[2025-11-21 00:03:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:03:07] c6-6-39-4.aglt2.org
[2025-11-21 00:03:07] apptainer works
[2025-11-21 00:03:07] Set ATHENA_PROC_NUMBER=9
[2025-11-21 00:03:07] Set ATHENA_CORE_NUMBER=9
[2025-11-21 00:03:07] Starting ATLAS job with PandaID=6892537389
[2025-11-21 00:03:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 23:03:11]  *** The last 200 lines of the pilot log: ***
[2025-11-21 23:03:11] 2025-11-22 03:51:28,777 | INFO     | time since job start (82037s) is within the limit (172800.0s)
[2025-11-21 23:03:11] 2025-11-22 03:51:30,469 | INFO     | monitor loop #4744: job 0:6892537389 is in state 'finished'
[2025-11-21 23:03:11] 2025-11-22 03:51:30,470 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:03:11] 2025-11-22 03:51:30,785 | INFO     | time since job start (82039s) is within the limit (172800.0s)
[2025-11-21 23:03:11] 2025-11-22 03:51:32,792 | INFO     | time since job start (82041s) is within the limit (172800.0s)
[2025-11-21 23:03:11] 2025-11-22 03:51:32,973 | INFO     | monitor loop #4745: job 0:6892537389 is in state 'finished'
[2025-11-21 23:03:11] 2025-11-22 03:51:32,973 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:03:11] 2025-11-22 03:51:34,806 | INFO     | time since job start (82043s) is within the limit (172800.0s)
[2025-11-21 23:03:11] 2025-11-22 03:51:35,477 | INFO     | monitor loop #4746: job 0:6892537389 is in state 'finished'
[2025-11-21 23:03:11] 2025-11-22 03:51:35,478 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:03:11] 2025-11-22 03:51:36,199 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 23:03:11] 2025-11-22 03:51:36,204 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2862.74075
[2025-11-21 23:03:11] 2025-11-22 03:51:36,217 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6892537389/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 23:03:11] 2025-11-22 03:51:36,218 | INFO     | extracted standard info from prmon json
[2025-11-21 23:03:11] 2025-11-22 03:51:36,219 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 23:03:11] 2025-11-22 03:51:36,219 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 23:03:11] 2025-11-22 03:51:36,256 | INFO     | fitting pss+swap vs Time
[2025-11-21 23:03:11] 2025-11-22 03:51:36,259 | INFO     | sum of square deviations: 749677975675.6266
[2025-11-21 23:03:11] 2025-11-22 03:51:36,290 | INFO     | sum of deviations: 4746364259511.086
[2025-11-21 23:03:11] 2025-11-22 03:51:36,290 | INFO     | mean x: 1763742515.8062594
[2025-11-21 23:03:11] 2025-11-22 03:51:36,290 | INFO     | mean y: 3100100.3464977643
[2025-11-21 23:03:11] 2025-11-22 03:51:36,290 | INFO     | intersect: -11163513714.68326
[2025-11-21 23:03:11] 2025-11-22 03:51:36,292 | INFO     | chi2: 15.708551605140245
[2025-11-21 23:03:11] 2025-11-22 03:51:36,294 | INFO     | sum of square deviations: 741334995563.5403
[2025-11-21 23:03:11] 2025-11-22 03:51:36,325 | INFO     | sum of deviations: 5199141010079.77
[2025-11-21 23:03:11] 2025-11-22 03:51:36,325 | INFO     | mean x: 1763742363.329843
[2025-11-21 23:03:11] 2025-11-22 03:51:36,325 | INFO     | mean y: 3108375.3792071803
[2025-11-21 23:03:11] 2025-11-22 03:51:36,325 | INFO     | intersect: -12366394355.882639
[2025-11-21 23:03:11] 2025-11-22 03:51:36,327 | INFO     | chi2: 12.872120389395352
[2025-11-21 23:03:11] 2025-11-22 03:51:36,327 | INFO     | current chi2=12.872120389395352 (change=18.056605644130418 %)
[2025-11-21 23:03:11] 2025-11-22 03:51:36,327 | INFO     | right removable region: 1336
[2025-11-21 23:03:11] 2025-11-22 03:51:36,329 | INFO     | sum of square deviations: 741329914885.1987
[2025-11-21 23:03:11] 2025-11-22 03:51:36,359 | INFO     | sum of deviations: 4169715157162.449
[2025-11-21 23:03:11] 2025-11-22 03:51:36,359 | INFO     | mean x: 1763742668.329095
[2025-11-21 23:03:11] 2025-11-22 03:51:36,359 | INFO     | mean y: 3110634.962602842
[2025-11-21 23:03:11] 2025-11-22 03:51:36,359 | INFO     | intersect: -9917309935.958033
[2025-11-21 23:03:11] 2025-11-22 03:51:36,360 | INFO     | chi2: 11.635200652448344
[2025-11-21 23:03:11] 2025-11-22 03:51:36,361 | INFO     | current chi2=11.635200652448344 (change=25.930786332706802 %)
[2025-11-21 23:03:11] 2025-11-22 03:51:36,362 | INFO     | sum of square deviations: 733043959859.1604
[2025-11-21 23:03:11] 2025-11-22 03:51:36,392 | INFO     | sum of deviations: 3720368734307.116
[2025-11-21 23:03:11] 2025-11-22 03:51:36,393 | INFO     | mean x: 1763742820.8528528
[2025-11-21 23:03:11] 2025-11-22 03:51:36,393 | INFO     | mean y: 3118903.7454954954
[2025-11-21 23:03:11] 2025-11-22 03:51:36,393 | INFO     | intersect: -8948286476.25423
[2025-11-21 23:03:11] 2025-11-22 03:51:36,394 | INFO     | chi2: 9.277592813330962
[2025-11-21 23:03:11] 2025-11-22 03:51:36,395 | INFO     | current chi2=9.277592813330962 (change=20.262717503039198 %)
[2025-11-21 23:03:11] 2025-11-22 03:51:36,395 | INFO     | left removable region: 20
[2025-11-21 23:03:11] 2025-11-22 03:51:36,396 | INFO     | sum of square deviations: 706952229239.7751
[2025-11-21 23:03:11] 2025-11-22 03:51:36,425 | INFO     | sum of deviations: 3990790991021.718
[2025-11-21 23:03:11] 2025-11-22 03:51:36,425 | INFO     | mean x: 1763742942.911854
[2025-11-21 23:03:11] 2025-11-22 03:51:36,425 | INFO     | mean y: 3134876.1527355625
[2025-11-21 23:03:11] 2025-11-22 03:51:36,425 | INFO     | intersect: -9953307944.06426
[2025-11-21 23:03:11] 2025-11-22 03:51:36,427 | INFO     | chi2: 5.324403707197546
[2025-11-21 23:03:11] 2025-11-22 03:51:36,427 | INFO     | current memory leak: 5.65 B/s (using 1316 data points, chi2=5.32)
[2025-11-21 23:03:11] 2025-11-22 03:51:36,428 | INFO     | could have reported an average CPU frequency of 3017 MHz (48 samples)
[2025-11-21 23:03:11] 2025-11-22 03:51:36,428 | INFO     | ..............................
[2025-11-21 23:03:11] 2025-11-22 03:51:36,429 | INFO     | . Timing measurements:
[2025-11-21 23:03:11] 2025-11-22 03:51:36,429 | INFO     | . get job = 0 s
[2025-11-21 23:03:11] 2025-11-22 03:51:36,429 | INFO     | . initial setup = 4 s
[2025-11-21 23:03:11] 2025-11-22 03:51:36,429 | INFO     | . payload setup = 39 s
[2025-11-21 23:03:11] 2025-11-22 03:51:36,429 | INFO     | . stage-in = 0 s
[2025-11-21 23:03:11] 2025-11-22 03:51:36,429 | INFO     | . payload execution = 81898 s
[2025-11-21 23:03:11] 2025-11-22 03:51:36,429 | INFO     | . stage-out = 5 s
[2025-11-21 23:03:11] 2025-11-22 03:51:36,429 | INFO     | . log creation = 1 s
[2025-11-21 23:03:11] 2025-11-22 03:51:36,429 | INFO     | ..............................
[2025-11-21 23:03:11] 2025-11-22 03:51:36,652 | INFO     | 
[2025-11-21 23:03:11] 2025-11-22 03:51:36,652 | INFO     | job summary report
[2025-11-21 23:03:11] 2025-11-22 03:51:36,652 | INFO     | --------------------------------------------------
[2025-11-21 23:03:11] 2025-11-22 03:51:36,652 | INFO     | PanDA job id: 6892537389
[2025-11-21 23:03:11] 2025-11-22 03:51:36,652 | INFO     | task id: 47493029
[2025-11-21 23:03:11] 2025-11-22 03:51:36,653 | INFO     | errors: (none)
[2025-11-21 23:03:11] 2025-11-22 03:51:36,653 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 23:03:11] 2025-11-22 03:51:36,653 | INFO     | pilot state: finished 
[2025-11-21 23:03:11] 2025-11-22 03:51:36,653 | INFO     | transexitcode: 0
[2025-11-21 23:03:11] 2025-11-22 03:51:36,653 | INFO     | exeerrorcode: 0
[2025-11-21 23:03:11] 2025-11-22 03:51:36,653 | INFO     | exeerrordiag: 
[2025-11-21 23:03:11] 2025-11-22 03:51:36,653 | INFO     | exitcode: 0
[2025-11-21 23:03:11] 2025-11-22 03:51:36,653 | INFO     | exitmsg: OK
[2025-11-21 23:03:11] 2025-11-22 03:51:36,653 | INFO     | cpuconsumptiontime: 240274 s
[2025-11-21 23:03:11] 2025-11-22 03:51:36,653 | INFO     | nevents: 1000
[2025-11-21 23:03:11] 2025-11-22 03:51:36,653 | INFO     | neventsw: 0
[2025-11-21 23:03:11] 2025-11-22 03:51:36,653 | INFO     | pid: 4125099
[2025-11-21 23:03:11] 2025-11-22 03:51:36,653 | INFO     | pgrp: 4125099
[2025-11-21 23:03:11] 2025-11-22 03:51:36,653 | INFO     | corecount: 9
[2025-11-21 23:03:11] 2025-11-22 03:51:36,653 | INFO     | event service: False
[2025-11-21 23:03:11] 2025-11-22 03:51:36,653 | INFO     | sizes: {0: 2298569, 1: 2298653, 2: 2298852, 13: 2298852, 23: 2298908, 34: 2299326, 45: 2299354, 81938: 2362797, 81944: 2371791, 81948: 2371875, 81972: 2372121}
[2025-11-21 23:03:11] 2025-11-22 03:51:36,654 | INFO     | --------------------------------------------------
[2025-11-21 23:03:11] 2025-11-22 03:51:36,654 | INFO     | 
[2025-11-21 23:03:11] 2025-11-22 03:51:36,654 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-21 23:03:11] 2025-11-22 03:51:36,811 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,811 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,811 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,811 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,811 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,811 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,811 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,811 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,812 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,812 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,812 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,812 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,812 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,812 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,812 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,812 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,812 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,812 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 23:03:11] 2025-11-22 03:51:36,812 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,812 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 23:03:11] 2025-11-22 03:51:36,813 | INFO     | job 6892537389 has completed (purged errors)
[2025-11-21 23:03:11] 2025-11-22 03:51:36,813 | INFO     | overall cleanup function is called
[2025-11-21 23:03:11] 2025-11-22 03:51:37,830 | INFO     | --- collectZombieJob: --- 10, [4125099]
[2025-11-21 23:03:11] 2025-11-22 03:51:37,830 | INFO     | zombie collector waiting for pid 4125099
[2025-11-21 23:03:11] 2025-11-22 03:51:37,831 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 23:03:11] 2025-11-22 03:51:37,831 | INFO     | collected zombie processes
[2025-11-21 23:03:11] 2025-11-22 03:51:37,831 | INFO     | will attempt to kill all subprocesses of pid=4125099
[2025-11-21 23:03:11] 2025-11-22 03:51:38,421 | INFO     | process IDs to be killed: [4125099] (in reverse order)
[2025-11-21 23:03:11] 2025-11-22 03:51:38,575 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 23:03:11] 2025-11-22 03:51:38,575 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 23:03:11] 2025-11-22 03:51:38,589 | INFO     | did not find any defunct processes belonging to 4125099
[2025-11-21 23:03:11] 2025-11-22 03:51:38,606 | INFO     | did not find any defunct processes belonging to 4125099
[2025-11-21 23:03:11] 2025-11-22 03:51:38,607 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 23:03:11] 2025-11-22 03:51:38,607 | INFO     | ready for new job
[2025-11-21 23:03:11] 2025-11-22 03:51:38,607 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 23:03:11] 2025-11-22 03:51:38,612 | INFO     | ***************************************
[2025-11-21 23:03:11] 2025-11-22 03:51:38,612 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 23:03:11] 2025-11-22 03:51:38,613 | INFO     | ***************************************
[2025-11-21 23:03:11] 2025-11-22 03:51:38,613 | INFO     | 
[2025-11-21 23:03:11] 2025-11-22 03:51:38,616 | INFO     | architecture information:
[2025-11-21 23:03:11] 2025-11-22 03:51:38,630 | INFO     | executing command: cat /etc/os-release
[2025-11-21 23:03:11] 2025-11-22 03:51:38,672 | INFO     | cat /etc/os-release:
[2025-11-21 23:03:11] NAME="CentOS Linux"
[2025-11-21 23:03:11] VERSION="7 (Core)"
[2025-11-21 23:03:11] ID="centos"
[2025-11-21 23:03:11] ID_LIKE="rhel fedora"
[2025-11-21 23:03:11] VERSION_ID="7"
[2025-11-21 23:03:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 23:03:11] ANSI_COLOR="0;31"
[2025-11-21 23:03:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 23:03:11] HOME_URL="https://www.centos.org/"
[2025-11-21 23:03:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 23:03:11] 
[2025-11-21 23:03:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 23:03:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 23:03:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 23:03:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 23:03:11] 
[2025-11-21 23:03:11] 2025-11-22 03:51:38,673 | INFO     | ***************************************
[2025-11-21 23:03:11] 2025-11-22 03:51:39,177 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-21 23:03:11] 2025-11-22 03:51:39,237 | INFO     | sufficient remaining disk space (69974622208 B)
[2025-11-21 23:03:11] 2025-11-22 03:51:39,237 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 23:03:11] 2025-11-22 03:51:39,237 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 23:03:11] 2025-11-22 03:51:39,237 | INFO     | update_server=False
[2025-11-21 23:03:11] 2025-11-22 03:51:39,237 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 23:03:11] 2025-11-22 03:51:39,238 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:03:11] 2025-11-22 03:51:39,238 | INFO     | aborting loop
[2025-11-21 23:03:11] 2025-11-22 03:51:39,383 | INFO     | all data control threads have been joined
[2025-11-21 23:03:11] 2025-11-22 03:51:39,489 | INFO     | all payload control threads have been joined
[2025-11-21 23:03:11] 2025-11-22 03:51:39,942 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 23:03:11] 2025-11-22 03:51:40,168 | INFO     | all job control threads have been joined
[2025-11-21 23:03:11] 2025-11-22 03:51:40,243 | INFO     | [job] retrieve thread has finished
[2025-11-21 23:03:11] 2025-11-22 03:51:40,243 | INFO     | [job] job monitor thread has finished
[2025-11-21 23:03:11] 2025-11-22 03:51:40,442 | INFO     | [data] control thread has finished
[2025-11-21 23:03:11] 2025-11-22 03:51:40,497 | INFO     | [payload] control thread has finished
[2025-11-21 23:03:11] 2025-11-22 03:51:40,729 | INFO     | [payload] failed_post thread has finished
[2025-11-21 23:03:11] 2025-11-22 03:51:40,878 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 23:03:11] 2025-11-22 03:51:40,879 | INFO     | [job] validate thread has finished
[2025-11-21 23:03:11] 2025-11-22 03:51:41,100 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 23:03:11] 2025-11-22 03:51:41,174 | INFO     | [job] control thread has finished
[2025-11-21 23:03:11] 2025-11-22 03:51:41,293 | INFO     | [data] copytool_in thread has finished
[2025-11-21 23:03:11] 2025-11-22 03:51:41,433 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 23:03:11] 2025-11-22 03:51:41,436 | INFO     | [payload] validate_post thread has finished
[2025-11-21 23:03:11] 2025-11-22 03:51:41,527 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 23:03:11] 2025-11-22 03:51:41,667 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:03:11] 2025-11-22 03:51:41,691 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 23:03:11] 2025-11-22 03:51:41,949 | INFO     | [data] copytool_out thread has finished
[2025-11-21 23:03:11] 2025-11-22 03:51:42,673 | INFO     | [job] queue monitor thread has finished
[2025-11-21 23:03:11] 2025-11-22 03:51:42,886 | INFO     | [monitor] cgroup control has ended
[2025-11-21 23:03:11] 2025-11-22 03:51:45,699 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 23:03:11] 2025-11-22 03:51:46,217 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139821941884736)>', '<ExcThread(monitor, started 139821301356288)>']
[2025-11-21 23:03:11] 2025-11-22 03:51:51,245 | INFO     | all workflow threads have been joined
[2025-11-21 23:03:11] 2025-11-22 03:51:51,245 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 23:03:11] 2025-11-22 03:51:51,246 | INFO     | traces error code: 0
[2025-11-21 23:03:11] 2025-11-22 03:51:51,246 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 23:03:11] 2025-11-22 03:52:08,654 | INFO     | PID=4086197 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 23:03:11] 2025-11-22 03:52:08,655 | INFO     | .. there are 39 such processes running
[2025-11-21 23:03:11] 2025-11-22 03:52:08,656 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 23:03:11] 2025-11-22 03:52:08,656 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 23:03:11] 2025-11-22 03:52:08,656 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 23:03:11] 2025-11-22 03:52:08,656 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 23:03:11] 2025-11-22 03:52:08,656 | INFO     | [monitor] control thread has ended
[2025-11-21 23:03:11] 2025-11-22 03:52:08,839 [wrapper] ==== pilot stdout END ====
[2025-11-21 23:03:11] 2025-11-22 03:52:08,842 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 23:03:11] 2025-11-22 03:52:08,853 [wrapper] pilotpid: 4086197
[2025-11-21 23:03:11] 2025-11-22 03:52:08,866 [wrapper] Pilot exit status: 0
[2025-11-21 23:03:11] 2025-11-22 03:52:09,029 [wrapper] pandaids: 6892537389
[2025-11-21 23:03:11] 2025-11-22 03:52:09,366 [wrapper] cleanup supervisor_pilot  538783 4086198
[2025-11-21 23:03:11] 2025-11-22 03:52:09,372 [wrapper] Test setup, not cleaning
[2025-11-21 23:03:11] 2025-11-22 03:52:09,375 [wrapper] apfmon messages muted
[2025-11-21 23:03:11] 2025-11-22 03:52:09,385 [wrapper] ==== wrapper stdout END ====
[2025-11-21 23:03:11] 2025-11-22 03:52:09,390 [wrapper] ==== wrapper stderr END ====
[2025-11-21 23:03:11]  *** Error codes and diagnostics ***
[2025-11-21 23:03:11]     "exeErrorCode": 0,
[2025-11-21 23:03:11]     "exeErrorDiag": "",
[2025-11-21 23:03:11]     "pilotErrorCode": 0,
[2025-11-21 23:03:11]     "pilotErrorDiag": "",
[2025-11-21 23:03:11]  *** Listing of results directory ***
[2025-11-21 23:03:11] total 1314900
[2025-11-21 23:03:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 02:27 pilot3.tar.gz
[2025-11-21 23:03:11] -rwx------. 1 boincer umatlas     36292 Nov 19 02:31 runpilot2-wrapper.sh
[2025-11-21 23:03:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 02:31 queuedata.json
[2025-11-21 23:03:11] -rw-r--r--. 1 boincer umatlas       100 Nov 21 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 23:03:11] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 00:03 run_atlas
[2025-11-21 23:03:11] -rw-r--r--. 1 boincer umatlas       105 Nov 21 00:03 job.xml
[2025-11-21 23:03:11] -rw-r--r--. 2 boincer umatlas 407807661 Nov 21 00:03 EVNT.47493027._000219.pool.root.1
[2025-11-21 23:03:11] -rw-r--r--. 2 boincer umatlas     15120 Nov 21 00:03 start_atlas.sh
[2025-11-21 23:03:11] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 00:03 shared
[2025-11-21 23:03:11] -rw-r--r--. 2 boincer umatlas    590097 Nov 21 00:03 input.tar.gz
[2025-11-21 23:03:11] -rw-r--r--. 1 boincer umatlas         0 Nov 21 00:03 boinc_lockfile
[2025-11-21 23:03:11] -rw-r--r--. 1 boincer umatlas      2773 Nov 21 00:03 pandaJob.out
[2025-11-21 23:03:11] -rw-------. 1 boincer umatlas    989817 Nov 21 00:04 agis_schedconf.cvmfs.json
[2025-11-21 23:03:11] drwx------. 5 boincer umatlas      4096 Nov 21 00:04 pilot3
[2025-11-21 23:03:11] -rw-r--r--. 1 boincer umatlas       533 Nov 21 22:32 boinc_task_state.xml
[2025-11-21 23:03:11] -rw-------. 1 boincer umatlas 909418641 Nov 21 22:50 HITS.47493029._002143.pool.root.1
[2025-11-21 23:03:11] -rw-------. 1 boincer umatlas      1068 Nov 21 22:51 memory_monitor_summary.json
[2025-11-21 23:03:11] -rw-------. 1 boincer umatlas   1526164 Nov 21 22:51 agis_ddmendpoints.agis.ALL.json
[2025-11-21 23:03:11] -rw-------. 1 boincer umatlas   2485770 Nov 21 22:51 log.47493029._002143.job.log.tgz.1
[2025-11-21 23:03:11] -rw-------. 1 boincer umatlas      8669 Nov 21 22:51 heartbeat.json
[2025-11-21 23:03:11] -rw-------. 1 boincer umatlas       823 Nov 21 22:52 pilotlog.txt
[2025-11-21 23:03:11] -rw-------. 1 boincer umatlas        95 Nov 21 22:52 pilot_heartbeat.json
[2025-11-21 23:03:11] -rw-------. 1 boincer umatlas  10168019 Nov 21 22:52 log.47493029._002143.job.log.1
[2025-11-21 23:03:11] -rw-------. 1 boincer umatlas       353 Nov 21 22:52 output.list
[2025-11-21 23:03:11] -rw-r--r--. 1 boincer umatlas       620 Nov 21 22:52 runtime_log
[2025-11-21 23:03:11] -rw-------. 1 boincer umatlas  12677120 Nov 21 22:52 result.tar.gz
[2025-11-21 23:03:11] -rw-r--r--. 1 boincer umatlas      8709 Nov 21 22:52 runtime_log.err
[2025-11-21 23:03:11] -rw-------. 1 boincer umatlas       667 Nov 21 22:52 cZNODm9prf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1sGKDmx83C6n.diag
[2025-11-21 23:03:11] -rw-r--r--. 1 boincer umatlas      6842 Nov 21 23:00 init_data.xml
[2025-11-21 23:03:11] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 23:03 boinc_mmap_file
[2025-11-21 23:03:11] -rw-r--r--. 1 boincer umatlas        29 Nov 21 23:03 wrapper_checkpoint.txt
[2025-11-21 23:03:11] -rw-r--r--. 1 boincer umatlas     21586 Nov 21 23:03 stderr.txt
[2025-11-21 23:03:11] HITS file was successfully produced:
[2025-11-21 23:03:11] -rw-------. 1 boincer umatlas 909418641 Nov 21 22:50 shared/HITS.pool.root.1
[2025-11-21 23:03:11]  *** Contents of shared directory: ***
[2025-11-21 23:03:11] total 1299344
[2025-11-21 23:03:11] -rw-r--r--. 2 boincer umatlas 407807661 Nov 21 00:03 ATLAS.root_0
[2025-11-21 23:03:11] -rw-r--r--. 2 boincer umatlas     15120 Nov 21 00:03 start_atlas.sh
[2025-11-21 23:03:11] -rw-r--r--. 2 boincer umatlas    590097 Nov 21 00:03 input.tar.gz
[2025-11-21 23:03:11] -rw-------. 1 boincer umatlas 909418641 Nov 21 22:50 HITS.pool.root.1
[2025-11-21 23:03:11] -rw-------. 1 boincer umatlas  12677120 Nov 21 22:52 result.tar.gz
23:03:33 (4073205): run_atlas exited; CPU time 242133.295427
23:03:33 (4073205): called boinc_finish(0)

</stderr_txt>
]]>

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