Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:09:26 (4083127): wrapper (7.7.26015): starting
07:09:26 (4083127): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 07:09:26] Arguments: --nthreads 9
[2025-11-21 07:09:26] Threads: 9
[2025-11-21 07:09:26] Checking for CVMFS
[2025-11-21 07:09:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 07:09:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 07:09:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 07:09:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 07:09:26] 2.13.3.0 290515 25589 348324 153124 1 165 39098028 40960000 9235 16776704 0 122771967 99.747 79619775 38480 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 07:09:26] CVMFS is ok
[2025-11-21 07:09:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 07:09:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 07:09:26] Further information can be found at the LHC@home message board.
[2025-11-21 07:09:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 07:09:26] Checking for apptainer binary...
[2025-11-21 07:09:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 07:09:26] Running /usr/bin/apptainer --version
[2025-11-21 07:09:26] apptainer version 1.4.4-1.el9
[2025-11-21 07:09:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 07:09:26] c6-5-37-4.aglt2.org
[2025-11-21 07:09:26] apptainer works
[2025-11-21 07:09:26] Set ATHENA_PROC_NUMBER=9
[2025-11-21 07:09:26] Set ATHENA_CORE_NUMBER=9
[2025-11-21 07:09:26] Starting ATLAS job with PandaID=6893877263
[2025-11-21 07:09:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 21:19:21]  *** The last 200 lines of the pilot log: ***
[2025-11-21 21:19:21] 2025-11-22 02:17:56,097 | INFO     | monitor loop #3159: job 0:6893877263 is in state 'finished'
[2025-11-21 21:19:21] 2025-11-22 02:17:56,097 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:19:21] 2025-11-22 02:17:56,390 | INFO     | time since job start (50897s) is within the limit (172800.0s)
[2025-11-21 21:19:21] 2025-11-22 02:17:58,621 | INFO     | monitor loop #3160: job 0:6893877263 is in state 'finished'
[2025-11-21 21:19:21] 2025-11-22 02:17:58,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:19:21] 2025-11-22 02:17:58,829 | INFO     | PID=4086918 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 21:19:21] 2025-11-22 02:17:58,830 | INFO     | .. there are 32 such processes running
[2025-11-21 21:19:21] 2025-11-22 02:17:59,846 | INFO     | time since job start (50900s) is within the limit (172800.0s)
[2025-11-21 21:19:21] 2025-11-22 02:18:01,131 | INFO     | monitor loop #3161: job 0:6893877263 is in state 'finished'
[2025-11-21 21:19:21] 2025-11-22 02:18:01,131 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:19:21] 2025-11-22 02:18:01,856 | INFO     | time since job start (50902s) is within the limit (172800.0s)
[2025-11-21 21:19:21] 2025-11-22 02:18:03,636 | INFO     | monitor loop #3162: job 0:6893877263 is in state 'finished'
[2025-11-21 21:19:21] 2025-11-22 02:18:03,636 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:19:21] 2025-11-22 02:18:03,863 | INFO     | time since job start (50904s) is within the limit (172800.0s)
[2025-11-21 21:19:21] 2025-11-22 02:18:05,883 | INFO     | time since job start (50906s) is within the limit (172800.0s)
[2025-11-21 21:19:21] 2025-11-22 02:18:06,203 | INFO     | monitor loop #3163: job 0:6893877263 is in state 'finished'
[2025-11-21 21:19:21] 2025-11-22 02:18:06,203 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:19:21] 2025-11-22 02:18:06,641 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 21:19:21] 2025-11-22 02:18:06,674 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2973.295821428572
[2025-11-21 21:19:21] 2025-11-22 02:18:06,700 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6893877263/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 21:19:21] 2025-11-22 02:18:06,712 | INFO     | extracted standard info from prmon json
[2025-11-21 21:19:21] 2025-11-22 02:18:06,712 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 21:19:21] 2025-11-22 02:18:06,712 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 21:19:21] 2025-11-22 02:18:06,766 | INFO     | fitting pss+swap vs Time
[2025-11-21 21:19:21] 2025-11-22 02:18:06,768 | INFO     | sum of square deviations: 179897992224.3224
[2025-11-21 21:19:21] 2025-11-22 02:18:06,853 | INFO     | sum of deviations: 491331688508.4186
[2025-11-21 21:19:21] 2025-11-22 02:18:06,854 | INFO     | mean x: 1763752416.3297362
[2025-11-21 21:19:21] 2025-11-22 02:18:06,854 | INFO     | mean y: 3136768.805755396
[2025-11-21 21:19:21] 2025-11-22 02:18:06,854 | INFO     | intersect: -4813967869.835836
[2025-11-21 21:19:21] 2025-11-22 02:18:06,876 | INFO     | chi2: 15.627134104567606
[2025-11-21 21:19:21] 2025-11-22 02:18:06,877 | INFO     | sum of square deviations: 176682865641.54395
[2025-11-21 21:19:21] 2025-11-22 02:18:07,013 | INFO     | sum of deviations: 794447883144.2423
[2025-11-21 21:19:21] 2025-11-22 02:18:07,013 | INFO     | mean x: 1763752263.8468034
[2025-11-21 21:19:21] 2025-11-22 02:18:07,013 | INFO     | mean y: 3151140.978287093
[2025-11-21 21:19:21] 2025-11-22 02:18:07,013 | INFO     | intersect: -7927494806.584881
[2025-11-21 21:19:21] 2025-11-22 02:18:07,014 | INFO     | chi2: 12.259365788115808
[2025-11-21 21:19:21] 2025-11-22 02:18:07,014 | INFO     | current chi2=12.259365788115808 (change=21.550773762589287 %)
[2025-11-21 21:19:21] 2025-11-22 02:18:07,014 | INFO     | right removable region: 828
[2025-11-21 21:19:21] 2025-11-22 02:18:07,015 | INFO     | sum of square deviations: 176681527432.92648
[2025-11-21 21:19:21] 2025-11-22 02:18:07,028 | INFO     | sum of deviations: 277305880353.119
[2025-11-21 21:19:21] 2025-11-22 02:18:07,028 | INFO     | mean x: 1763752568.8443909
[2025-11-21 21:19:21] 2025-11-22 02:18:07,028 | INFO     | mean y: 3146897.659831122
[2025-11-21 21:19:21] 2025-11-22 02:18:07,028 | INFO     | intersect: -2765104916.4079714
[2025-11-21 21:19:21] 2025-11-22 02:18:07,029 | INFO     | chi2: 13.855175064286673
[2025-11-21 21:19:21] 2025-11-22 02:18:07,030 | INFO     | current chi2=13.855175064286673 (change=11.338989148131857 %)
[2025-11-21 21:19:21] 2025-11-22 02:18:07,030 | INFO     | left removable region: 10
[2025-11-21 21:19:21] 2025-11-22 02:18:07,031 | INFO     | sum of square deviations: 169742359842.51892
[2025-11-21 21:19:21] 2025-11-22 02:18:07,079 | INFO     | sum of deviations: 584297883760.2357
[2025-11-21 21:19:21] 2025-11-22 02:18:07,079 | INFO     | mean x: 1763752538.378973
[2025-11-21 21:19:21] 2025-11-22 02:18:07,079 | INFO     | mean y: 3166752.350855746
[2025-11-21 21:19:21] 2025-11-22 02:18:07,079 | INFO     | intersect: -6068133756.300567
[2025-11-21 21:19:21] 2025-11-22 02:18:07,080 | INFO     | chi2: 9.834905130013993
[2025-11-21 21:19:21] 2025-11-22 02:18:07,081 | INFO     | current memory leak: 3.44 B/s (using 818 data points, chi2=9.83)
[2025-11-21 21:19:21] 2025-11-22 02:18:07,082 | INFO     | could have reported an average CPU frequency of 3069 MHz (31 samples)
[2025-11-21 21:19:21] 2025-11-22 02:18:07,082 | INFO     | ..............................
[2025-11-21 21:19:21] 2025-11-22 02:18:07,082 | INFO     | . Timing measurements:
[2025-11-21 21:19:21] 2025-11-22 02:18:07,082 | INFO     | . get job = 0 s
[2025-11-21 21:19:21] 2025-11-22 02:18:07,082 | INFO     | . initial setup = 2 s
[2025-11-21 21:19:21] 2025-11-22 02:18:07,082 | INFO     | . payload setup = 6 s
[2025-11-21 21:19:21] 2025-11-22 02:18:07,082 | INFO     | . stage-in = 0 s
[2025-11-21 21:19:21] 2025-11-22 02:18:07,082 | INFO     | . payload execution = 50838 s
[2025-11-21 21:19:21] 2025-11-22 02:18:07,082 | INFO     | . stage-out = 12 s
[2025-11-21 21:19:21] 2025-11-22 02:18:07,082 | INFO     | . log creation = 4 s
[2025-11-21 21:19:21] 2025-11-22 02:18:07,082 | INFO     | ..............................
[2025-11-21 21:19:21] 2025-11-22 02:18:07,665 | INFO     | 
[2025-11-21 21:19:21] 2025-11-22 02:18:07,696 | INFO     | job summary report
[2025-11-21 21:19:21] 2025-11-22 02:18:07,696 | INFO     | --------------------------------------------------
[2025-11-21 21:19:21] 2025-11-22 02:18:07,696 | INFO     | PanDA job id: 6893877263
[2025-11-21 21:19:21] 2025-11-22 02:18:07,696 | INFO     | task id: 47523449
[2025-11-21 21:19:21] 2025-11-22 02:18:07,696 | INFO     | errors: (none)
[2025-11-21 21:19:21] 2025-11-22 02:18:07,697 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 21:19:21] 2025-11-22 02:18:07,697 | INFO     | pilot state: finished 
[2025-11-21 21:19:21] 2025-11-22 02:18:07,697 | INFO     | transexitcode: 0
[2025-11-21 21:19:21] 2025-11-22 02:18:07,697 | INFO     | exeerrorcode: 0
[2025-11-21 21:19:21] 2025-11-22 02:18:07,697 | INFO     | exeerrordiag: 
[2025-11-21 21:19:21] 2025-11-22 02:18:07,738 | INFO     | exitcode: 0
[2025-11-21 21:19:21] 2025-11-22 02:18:07,739 | INFO     | exitmsg: OK
[2025-11-21 21:19:21] 2025-11-22 02:18:07,739 | INFO     | cpuconsumptiontime: 227132 s
[2025-11-21 21:19:21] 2025-11-22 02:18:07,739 | INFO     | nevents: 1000
[2025-11-21 21:19:21] 2025-11-22 02:18:07,739 | INFO     | neventsw: 0
[2025-11-21 21:19:21] 2025-11-22 02:18:07,739 | INFO     | pid: 4093978
[2025-11-21 21:19:21] 2025-11-22 02:18:07,739 | INFO     | pgrp: 4093978
[2025-11-21 21:19:21] 2025-11-22 02:18:07,739 | INFO     | corecount: 9
[2025-11-21 21:19:21] 2025-11-22 02:18:07,739 | INFO     | event service: False
[2025-11-21 21:19:21] 2025-11-22 02:18:07,739 | INFO     | sizes: {0: 2297927, 1: 2298783, 6: 2299045, 12: 2299073, 50846: 2347159, 50859: 2356153, 50860: 2356337, 50893: 2356583}
[2025-11-21 21:19:21] 2025-11-22 02:18:07,739 | INFO     | --------------------------------------------------
[2025-11-21 21:19:21] 2025-11-22 02:18:07,740 | INFO     | 
[2025-11-21 21:19:21] 2025-11-22 02:18:07,740 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-21 21:19:21] 2025-11-22 02:18:07,926 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,926 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,926 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,926 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,926 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,926 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,926 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,926 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,926 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,926 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,927 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,927 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,927 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,927 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,927 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,927 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,927 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,927 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 21:19:21] 2025-11-22 02:18:07,927 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,927 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 21:19:21] 2025-11-22 02:18:07,927 | INFO     | job 6893877263 has completed (purged errors)
[2025-11-21 21:19:21] 2025-11-22 02:18:07,927 | INFO     | overall cleanup function is called
[2025-11-21 21:19:21] 2025-11-22 02:18:08,958 | INFO     | --- collectZombieJob: --- 10, [4093978]
[2025-11-21 21:19:21] 2025-11-22 02:18:08,958 | INFO     | zombie collector waiting for pid 4093978
[2025-11-21 21:19:21] 2025-11-22 02:18:08,958 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 21:19:21] 2025-11-22 02:18:08,959 | INFO     | collected zombie processes
[2025-11-21 21:19:21] 2025-11-22 02:18:08,959 | INFO     | will attempt to kill all subprocesses of pid=4093978
[2025-11-21 21:19:21] 2025-11-22 02:18:11,789 | INFO     | process IDs to be killed: [4093978] (in reverse order)
[2025-11-21 21:19:21] 2025-11-22 02:18:12,169 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 21:19:21] 2025-11-22 02:18:12,169 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 21:19:21] 2025-11-22 02:18:12,198 | INFO     | did not find any defunct processes belonging to 4093978
[2025-11-21 21:19:21] 2025-11-22 02:18:12,223 | INFO     | did not find any defunct processes belonging to 4093978
[2025-11-21 21:19:21] 2025-11-22 02:18:12,231 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 21:19:21] 2025-11-22 02:18:12,232 | INFO     | ready for new job
[2025-11-21 21:19:21] 2025-11-22 02:18:12,232 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 21:19:21] 2025-11-22 02:18:12,240 | INFO     | ***************************************
[2025-11-21 21:19:21] 2025-11-22 02:18:12,240 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 21:19:21] 2025-11-22 02:18:12,240 | INFO     | ***************************************
[2025-11-21 21:19:21] 2025-11-22 02:18:12,241 | INFO     | 
[2025-11-21 21:19:21] 2025-11-22 02:18:12,247 | INFO     | architecture information:
[2025-11-21 21:19:21] 2025-11-22 02:18:12,256 | INFO     | executing command: cat /etc/os-release
[2025-11-21 21:19:21] 2025-11-22 02:18:12,333 | INFO     | cat /etc/os-release:
[2025-11-21 21:19:21] NAME="CentOS Linux"
[2025-11-21 21:19:21] VERSION="7 (Core)"
[2025-11-21 21:19:21] ID="centos"
[2025-11-21 21:19:21] ID_LIKE="rhel fedora"
[2025-11-21 21:19:21] VERSION_ID="7"
[2025-11-21 21:19:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 21:19:21] ANSI_COLOR="0;31"
[2025-11-21 21:19:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 21:19:21] HOME_URL="https://www.centos.org/"
[2025-11-21 21:19:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 21:19:21] 
[2025-11-21 21:19:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 21:19:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 21:19:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 21:19:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 21:19:21] 
[2025-11-21 21:19:21] 2025-11-22 02:18:12,334 | INFO     | ***************************************
[2025-11-21 21:19:21] 2025-11-22 02:18:12,837 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-21 21:19:21] 2025-11-22 02:18:12,899 | INFO     | sufficient remaining disk space (69164072960 B)
[2025-11-21 21:19:21] 2025-11-22 02:18:12,899 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 21:19:21] 2025-11-22 02:18:12,900 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 21:19:21] 2025-11-22 02:18:12,900 | INFO     | update_server=False
[2025-11-21 21:19:21] 2025-11-22 02:18:12,900 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 21:19:21] 2025-11-22 02:18:12,900 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:19:21] 2025-11-22 02:18:12,901 | INFO     | aborting loop
[2025-11-21 21:19:21] 2025-11-22 02:18:12,901 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:19:21] 2025-11-22 02:18:12,901 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 21:19:21] 2025-11-22 02:18:12,901 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 21:19:21] 2025-11-22 02:18:13,868 | INFO     | all data control threads have been joined
[2025-11-21 21:19:21] 2025-11-22 02:18:13,906 | INFO     | [job] retrieve thread has finished
[2025-11-21 21:19:21] 2025-11-22 02:18:13,907 | INFO     | [job] job monitor thread has finished
[2025-11-21 21:19:21] 2025-11-22 02:18:13,907 | INFO     | [job] queue monitor thread has finished
[2025-11-21 21:19:21] 2025-11-22 02:18:14,132 | INFO     | all payload control threads have been joined
[2025-11-21 21:19:21] 2025-11-22 02:18:14,171 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 21:19:21] 2025-11-22 02:18:14,254 | INFO     | [job] validate thread has finished
[2025-11-21 21:19:21] 2025-11-22 02:18:14,255 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 21:19:21] 2025-11-22 02:18:14,288 | INFO     | [data] copytool_in thread has finished
[2025-11-21 21:19:21] 2025-11-22 02:18:14,616 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 21:19:21] 2025-11-22 02:18:14,765 | INFO     | [payload] validate_post thread has finished
[2025-11-21 21:19:21] 2025-11-22 02:18:14,775 | INFO     | [payload] failed_post thread has finished
[2025-11-21 21:19:21] 2025-11-22 02:18:14,776 | INFO     | all job control threads have been joined
[2025-11-21 21:19:21] 2025-11-22 02:18:14,874 | INFO     | [data] control thread has finished
[2025-11-21 21:19:21] 2025-11-22 02:18:14,915 | INFO     | [data] copytool_out thread has finished
[2025-11-21 21:19:21] 2025-11-22 02:18:14,988 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 21:19:21] 2025-11-22 02:18:15,151 | INFO     | [payload] control thread has finished
[2025-11-21 21:19:21] 2025-11-22 02:18:15,787 | INFO     | [job] control thread has finished
[2025-11-21 21:19:21] 2025-11-22 02:18:16,931 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 21:19:21] 2025-11-22 02:18:41,554 | INFO     | PID=4086918 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 21:19:21] 2025-11-22 02:18:41,554 | INFO     | .. there are 32 such processes running
[2025-11-21 21:19:21] 2025-11-22 02:18:41,554 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 21:19:21] 2025-11-22 02:18:41,555 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 21:19:21] 2025-11-22 02:18:41,555 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 21:19:21] 2025-11-22 02:19:11,649 | INFO     | [monitor] cgroup control has ended
[2025-11-21 21:19:21] 2025-11-22 02:19:13,670 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140121978177344)>', '<ExcThread(monitor, started 140121328301824)>']
[2025-11-21 21:19:21] 2025-11-22 02:19:13,853 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 21:19:21] 2025-11-22 02:19:13,853 | INFO     | [monitor] control thread has ended
[2025-11-21 21:19:21] 2025-11-22 02:19:18,696 | INFO     | all workflow threads have been joined
[2025-11-21 21:19:21] 2025-11-22 02:19:18,696 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 21:19:21] 2025-11-22 02:19:18,697 | INFO     | traces error code: 0
[2025-11-21 21:19:21] 2025-11-22 02:19:18,697 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 21:19:21] 2025-11-22 02:19:20,113 [wrapper] ==== pilot stdout END ====
[2025-11-21 21:19:21] 2025-11-22 02:19:20,135 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 21:19:21] 2025-11-22 02:19:20,158 [wrapper] pilotpid: 4086918
[2025-11-21 21:19:21] 2025-11-22 02:19:20,176 [wrapper] Pilot exit status: 0
[2025-11-21 21:19:21] 2025-11-22 02:19:20,255 [wrapper] pandaids: 6893877263
[2025-11-21 21:19:21] 2025-11-22 02:19:20,747 [wrapper] cleanup supervisor_pilot 2726536 4086919
[2025-11-21 21:19:21] 2025-11-22 02:19:20,776 [wrapper] Test setup, not cleaning
[2025-11-21 21:19:21] 2025-11-22 02:19:20,793 [wrapper] apfmon messages muted
[2025-11-21 21:19:21] 2025-11-22 02:19:20,813 [wrapper] ==== wrapper stdout END ====
[2025-11-21 21:19:21] 2025-11-22 02:19:20,833 [wrapper] ==== wrapper stderr END ====
[2025-11-21 21:19:21]  *** Error codes and diagnostics ***
[2025-11-21 21:19:21]     "exeErrorCode": 0,
[2025-11-21 21:19:21]     "exeErrorDiag": "",
[2025-11-21 21:19:21]     "pilotErrorCode": 0,
[2025-11-21 21:19:21]     "pilotErrorDiag": "",
[2025-11-21 21:19:21]  *** Listing of results directory ***
[2025-11-21 21:19:21] total 1314616
[2025-11-21 21:19:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 13:04 pilot3.tar.gz
[2025-11-21 21:19:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 13:29 queuedata.json
[2025-11-21 21:19:21] -rwx------. 1 boincer umatlas     36292 Nov 20 13:29 runpilot2-wrapper.sh
[2025-11-21 21:19:21] -rw-r--r--. 1 boincer umatlas       100 Nov 21 07:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 21:19:21] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 07:09 run_atlas
[2025-11-21 21:19:21] -rw-r--r--. 1 boincer umatlas       105 Nov 21 07:09 job.xml
[2025-11-21 21:19:21] -rw-r--r--. 2 boincer umatlas 408067932 Nov 21 07:09 EVNT.47493127._000795.pool.root.1
[2025-11-21 21:19:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 07:09 start_atlas.sh
[2025-11-21 21:19:21] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 07:09 shared
[2025-11-21 21:19:21] -rw-r--r--. 2 boincer umatlas    590101 Nov 21 07:09 input.tar.gz
[2025-11-21 21:19:21] -rw-r--r--. 1 boincer umatlas         0 Nov 21 07:09 boinc_lockfile
[2025-11-21 21:19:21] -rw-r--r--. 1 boincer umatlas      2784 Nov 21 07:09 pandaJob.out
[2025-11-21 21:19:21] -rw-------. 1 boincer umatlas        57 Nov 21 07:09 setup.sh.local
[2025-11-21 21:19:21] -rw-------. 1 boincer umatlas    989817 Nov 21 07:09 agis_schedconf.cvmfs.json
[2025-11-21 21:19:21] drwx------. 5 boincer umatlas      4096 Nov 21 07:09 pilot3
[2025-11-21 21:19:21] -rw-r--r--. 1 boincer umatlas       533 Nov 21 20:51 boinc_task_state.xml
[2025-11-21 21:19:21] -rw-r--r--. 1 boincer umatlas      6843 Nov 21 21:11 init_data.xml
[2025-11-21 21:19:21] -rw-------. 1 boincer umatlas 916907515 Nov 21 21:16 HITS.47523449._007946.pool.root.1
[2025-11-21 21:19:21] -rw-------. 1 boincer umatlas      1057 Nov 21 21:17 memory_monitor_summary.json
[2025-11-21 21:19:21] -rw-------. 1 boincer umatlas   1526164 Nov 21 21:17 agis_ddmendpoints.agis.ALL.json
[2025-11-21 21:19:21] -rw-------. 1 boincer umatlas   2118934 Nov 21 21:17 log.47523449._007946.job.log.tgz.1
[2025-11-21 21:19:21] -rw-------. 1 boincer umatlas        95 Nov 21 21:17 pilot_heartbeat.json
[2025-11-21 21:19:21] -rw-------. 1 boincer umatlas      8618 Nov 21 21:18 heartbeat.json
[2025-11-21 21:19:21] -rw-r--r--. 1 boincer umatlas        29 Nov 21 21:19 wrapper_checkpoint.txt
[2025-11-21 21:19:21] -rw-------. 1 boincer umatlas      4824 Nov 21 21:19 pilotlog.txt
[2025-11-21 21:19:21] -rw-------. 1 boincer umatlas   6510726 Nov 21 21:19 log.47523449._007946.job.log.1
[2025-11-21 21:19:21] -rw-------. 1 boincer umatlas       353 Nov 21 21:19 output.list
[2025-11-21 21:19:21] -rw-r--r--. 1 boincer umatlas       620 Nov 21 21:19 runtime_log
[2025-11-21 21:19:21] -rw-------. 1 boincer umatlas   8652800 Nov 21 21:19 result.tar.gz
[2025-11-21 21:19:21] -rw-r--r--. 1 boincer umatlas      9348 Nov 21 21:19 runtime_log.err
[2025-11-21 21:19:21] -rw-------. 1 boincer umatlas       661 Nov 21 21:19 4p8MDmtaOg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtOIKDmiold0n.diag
[2025-11-21 21:19:21] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 21:19 boinc_mmap_file
[2025-11-21 21:19:21] -rw-r--r--. 1 boincer umatlas     21851 Nov 21 21:19 stderr.txt
[2025-11-21 21:19:21] HITS file was successfully produced:
[2025-11-21 21:19:21] -rw-------. 1 boincer umatlas 916907515 Nov 21 21:16 shared/HITS.pool.root.1
[2025-11-21 21:19:21]  *** Contents of shared directory: ***
[2025-11-21 21:19:21] total 1302980
[2025-11-21 21:19:21] -rw-r--r--. 2 boincer umatlas 408067932 Nov 21 07:09 ATLAS.root_0
[2025-11-21 21:19:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 07:09 start_atlas.sh
[2025-11-21 21:19:21] -rw-r--r--. 2 boincer umatlas    590101 Nov 21 07:09 input.tar.gz
[2025-11-21 21:19:21] -rw-------. 1 boincer umatlas 916907515 Nov 21 21:16 HITS.pool.root.1
[2025-11-21 21:19:21] -rw-------. 1 boincer umatlas   8652800 Nov 21 21:19 result.tar.gz
21:19:22 (4083127): run_atlas exited; CPU time 228233.632567
21:19:22 (4083127): called boinc_finish(0)

</stderr_txt>
]]>

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