Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:39:55 (3058447): wrapper (7.7.26015): starting
03:39:55 (3058447): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 03:39:56] Arguments: --nthreads 8
[2025-11-21 03:39:56] Threads: 8
[2025-11-21 03:39:56] Checking for CVMFS
[2025-11-21 03:39:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 03:39:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 03:39:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 03:39:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 03:39:58] 2.13.2.0 37103 26283 207736 153114 0 198 32012851 40960001 6742 16776704 0 35952698 99.595 35460745 21773 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 03:39:58] CVMFS is ok
[2025-11-21 03:39:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 03:39:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 03:39:58] Further information can be found at the LHC@home message board.
[2025-11-21 03:39:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 03:39:58] Checking for apptainer binary...
[2025-11-21 03:39:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 03:39:58] Running /usr/bin/apptainer --version
[2025-11-21 03:39:58] apptainer version 1.4.4-1.el9
[2025-11-21 03:39:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 03:39:59] c-211-9.aglt2.org
[2025-11-21 03:39:59] apptainer works
[2025-11-21 03:39:59] Set ATHENA_PROC_NUMBER=8
[2025-11-21 03:39:59] Set ATHENA_CORE_NUMBER=8
[2025-11-21 03:39:59] Starting ATLAS job with PandaID=6893861999
[2025-11-21 03:39:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 01:04:21]  *** The last 200 lines of the pilot log: ***
[2025-11-23 01:04:21] 2025-11-23 06:02:51,989 | INFO     | monitor loop #8953: job 0:6893861999 is in state 'finished'
[2025-11-23 01:04:21] 2025-11-23 06:02:51,989 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:04:21] 2025-11-23 06:02:51,996 | INFO     | time since job start (163333s) is within the limit (172800.0s)
[2025-11-23 01:04:21] 2025-11-23 06:02:54,003 | INFO     | time since job start (163336s) is within the limit (172800.0s)
[2025-11-23 01:04:21] 2025-11-23 06:02:54,494 | INFO     | monitor loop #8954: job 0:6893861999 is in state 'finished'
[2025-11-23 01:04:21] 2025-11-23 06:02:54,494 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:04:21] 2025-11-23 06:02:57,068 | INFO     | monitor loop #8955: job 0:6893861999 is in state 'finished'
[2025-11-23 01:04:21] 2025-11-23 06:02:57,068 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:04:21] 2025-11-23 06:02:57,646 | INFO     | PID=3064401 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 01:04:21] 2025-11-23 06:02:57,646 | INFO     | .. there are 17 such processes running
[2025-11-23 01:04:21] 2025-11-23 06:02:58,650 | INFO     | time since job start (163340s) is within the limit (172800.0s)
[2025-11-23 01:04:21] 2025-11-23 06:02:59,577 | INFO     | monitor loop #8956: job 0:6893861999 is in state 'finished'
[2025-11-23 01:04:21] 2025-11-23 06:02:59,578 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:04:21] 2025-11-23 06:03:00,661 | INFO     | time since job start (163342s) is within the limit (172800.0s)
[2025-11-23 01:04:21] 2025-11-23 06:03:01,665 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 01:04:21] 2025-11-23 06:03:01,683 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2562.8743541666668
[2025-11-23 01:04:21] 2025-11-23 06:03:01,703 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6893861999/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 01:04:21] 2025-11-23 06:03:01,704 | INFO     | extracted standard info from prmon json
[2025-11-23 01:04:21] 2025-11-23 06:03:01,704 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 01:04:21] 2025-11-23 06:03:01,704 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 01:04:21] 2025-11-23 06:03:01,755 | INFO     | fitting pss+swap vs Time
[2025-11-23 01:04:21] 2025-11-23 06:03:01,760 | INFO     | sum of square deviations: 5941967892493.539
[2025-11-23 01:04:21] 2025-11-23 06:03:02,095 | INFO     | monitor loop #8957: job 0:6893861999 is in state 'finished'
[2025-11-23 01:04:21] 2025-11-23 06:03:02,096 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:04:21] 2025-11-23 06:03:02,214 | INFO     | sum of deviations: 5226142414330.68
[2025-11-23 01:04:21] 2025-11-23 06:03:02,214 | INFO     | mean x: 1763796123.7589686
[2025-11-23 01:04:21] 2025-11-23 06:03:02,215 | INFO     | mean y: 3004700.492526158
[2025-11-23 01:04:21] 2025-11-23 06:03:02,215 | INFO     | intersect: -1548307911.656331
[2025-11-23 01:04:21] 2025-11-23 06:03:02,222 | INFO     | chi2: 30.80027128962708
[2025-11-23 01:04:21] 2025-11-23 06:03:02,231 | INFO     | sum of square deviations: 5908726075382.655
[2025-11-23 01:04:21] 2025-11-23 06:03:02,658 | INFO     | sum of deviations: 6371548697195.467
[2025-11-23 01:04:21] 2025-11-23 06:03:02,659 | INFO     | mean x: 1763795971.2669413
[2025-11-23 01:04:21] 2025-11-23 06:03:02,659 | INFO     | mean y: 3009954.8843129915
[2025-11-23 01:04:21] 2025-11-23 06:03:02,659 | INFO     | intersect: -1898941799.092825
[2025-11-23 01:04:21] 2025-11-23 06:03:02,667 | INFO     | chi2: 26.117604579762308
[2025-11-23 01:04:21] 2025-11-23 06:03:02,669 | INFO     | current chi2=26.117604579762308 (change=15.203329431198231 %)
[2025-11-23 01:04:21] 2025-11-23 06:03:02,669 | INFO     | right removable region: 2670
[2025-11-23 01:04:21] 2025-11-23 06:03:02,677 | INFO     | sum of square deviations: 5908719123212.661
[2025-11-23 01:04:21] 2025-11-23 06:03:02,691 | INFO     | time since job start (163344s) is within the limit (172800.0s)
[2025-11-23 01:04:21] 2025-11-23 06:03:02,901 | INFO     | sum of deviations: 4248225073532.049
[2025-11-23 01:04:21] 2025-11-23 06:03:02,902 | INFO     | mean x: 1763796276.2669413
[2025-11-23 01:04:21] 2025-11-23 06:03:02,902 | INFO     | mean y: 3009185.3084986894
[2025-11-23 01:04:21] 2025-11-23 06:03:02,902 | INFO     | intersect: -1265117359.4113357
[2025-11-23 01:04:21] 2025-11-23 06:03:02,906 | INFO     | chi2: 27.65920041195292
[2025-11-23 01:04:21] 2025-11-23 06:03:02,906 | INFO     | current chi2=27.65920041195292 (change=10.198192243624849 %)
[2025-11-23 01:04:21] 2025-11-23 06:03:02,906 | INFO     | left removable region: 10
[2025-11-23 01:04:21] 2025-11-23 06:03:02,910 | INFO     | sum of square deviations: 5836017802799.852
[2025-11-23 01:04:21] 2025-11-23 06:03:03,173 | INFO     | sum of deviations: 5307992668621.64
[2025-11-23 01:04:21] 2025-11-23 06:03:03,173 | INFO     | mean x: 1763796245.7830827
[2025-11-23 01:04:21] 2025-11-23 06:03:03,173 | INFO     | mean y: 3016944.5921052634
[2025-11-23 01:04:21] 2025-11-23 06:03:03,173 | INFO     | intersect: -1601196383.384279
[2025-11-23 01:04:21] 2025-11-23 06:03:03,178 | INFO     | chi2: 21.705819797415497
[2025-11-23 01:04:21] 2025-11-23 06:03:03,179 | INFO     | current memory leak: 0.91 B/s (using 2660 data points, chi2=21.71)
[2025-11-23 01:04:21] 2025-11-23 06:03:03,181 | INFO     | could have reported an average CPU frequency of 2629 MHz (92 samples)
[2025-11-23 01:04:21] 2025-11-23 06:03:03,182 | INFO     | ..............................
[2025-11-23 01:04:21] 2025-11-23 06:03:03,182 | INFO     | . Timing measurements:
[2025-11-23 01:04:21] 2025-11-23 06:03:03,182 | INFO     | . get job = 0 s
[2025-11-23 01:04:21] 2025-11-23 06:03:03,182 | INFO     | . initial setup = 5 s
[2025-11-23 01:04:21] 2025-11-23 06:03:03,182 | INFO     | . payload setup = 25 s
[2025-11-23 01:04:21] 2025-11-23 06:03:03,182 | INFO     | . stage-in = 0 s
[2025-11-23 01:04:21] 2025-11-23 06:03:03,183 | INFO     | . payload execution = 163211 s
[2025-11-23 01:04:21] 2025-11-23 06:03:03,183 | INFO     | . stage-out = 11 s
[2025-11-23 01:04:21] 2025-11-23 06:03:03,183 | INFO     | . log creation = 4 s
[2025-11-23 01:04:21] 2025-11-23 06:03:03,183 | INFO     | ..............................
[2025-11-23 01:04:21] 2025-11-23 06:03:03,311 | INFO     | 
[2025-11-23 01:04:21] 2025-11-23 06:03:03,311 | INFO     | job summary report
[2025-11-23 01:04:21] 2025-11-23 06:03:03,311 | INFO     | --------------------------------------------------
[2025-11-23 01:04:21] 2025-11-23 06:03:03,311 | INFO     | PanDA job id: 6893861999
[2025-11-23 01:04:21] 2025-11-23 06:03:03,311 | INFO     | task id: 47523449
[2025-11-23 01:04:21] 2025-11-23 06:03:03,312 | INFO     | errors: (none)
[2025-11-23 01:04:21] 2025-11-23 06:03:03,312 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 01:04:21] 2025-11-23 06:03:03,312 | INFO     | pilot state: finished 
[2025-11-23 01:04:21] 2025-11-23 06:03:03,312 | INFO     | transexitcode: 0
[2025-11-23 01:04:21] 2025-11-23 06:03:03,312 | INFO     | exeerrorcode: 0
[2025-11-23 01:04:21] 2025-11-23 06:03:03,312 | INFO     | exeerrordiag: 
[2025-11-23 01:04:21] 2025-11-23 06:03:03,312 | INFO     | exitcode: 0
[2025-11-23 01:04:21] 2025-11-23 06:03:03,312 | INFO     | exitmsg: OK
[2025-11-23 01:04:21] 2025-11-23 06:03:03,313 | INFO     | cpuconsumptiontime: 336956 s
[2025-11-23 01:04:21] 2025-11-23 06:03:03,313 | INFO     | nevents: 1000
[2025-11-23 01:04:21] 2025-11-23 06:03:03,313 | INFO     | neventsw: 0
[2025-11-23 01:04:21] 2025-11-23 06:03:03,313 | INFO     | pid: 3080036
[2025-11-23 01:04:21] 2025-11-23 06:03:03,313 | INFO     | pgrp: 3080036
[2025-11-23 01:04:21] 2025-11-23 06:03:03,313 | INFO     | corecount: 8
[2025-11-23 01:04:21] 2025-11-23 06:03:03,313 | INFO     | event service: False
[2025-11-23 01:04:21] 2025-11-23 06:03:03,313 | INFO     | sizes: {0: 2298636, 1: 2298835, 2: 2298835, 12: 2298863, 23: 2298891, 25: 2299181, 34: 2299337, 163242: 2397974, 163255: 2407024, 163292: 2407214}
[2025-11-23 01:04:21] 2025-11-23 06:03:03,314 | INFO     | --------------------------------------------------
[2025-11-23 01:04:21] 2025-11-23 06:03:03,314 | INFO     | 
[2025-11-23 01:04:21] 2025-11-23 06:03:03,314 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-23 01:04:21] 2025-11-23 06:03:03,394 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,394 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,394 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,395 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,395 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,395 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,395 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,395 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,395 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,396 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,396 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,396 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,396 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,396 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,396 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,397 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,397 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,397 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 01:04:21] 2025-11-23 06:03:03,423 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,424 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 01:04:21] 2025-11-23 06:03:03,424 | INFO     | job 6893861999 has completed (purged errors)
[2025-11-23 01:04:21] 2025-11-23 06:03:03,424 | INFO     | overall cleanup function is called
[2025-11-23 01:04:21] 2025-11-23 06:03:04,539 | INFO     | --- collectZombieJob: --- 10, [3080036]
[2025-11-23 01:04:21] 2025-11-23 06:03:04,539 | INFO     | zombie collector waiting for pid 3080036
[2025-11-23 01:04:21] 2025-11-23 06:03:04,554 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 01:04:21] 2025-11-23 06:03:04,554 | INFO     | collected zombie processes
[2025-11-23 01:04:21] 2025-11-23 06:03:04,554 | INFO     | will attempt to kill all subprocesses of pid=3080036
[2025-11-23 01:04:21] 2025-11-23 06:03:07,618 | INFO     | process IDs to be killed: [3080036] (in reverse order)
[2025-11-23 01:04:21] 2025-11-23 06:03:08,018 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 01:04:21] 2025-11-23 06:03:08,018 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 01:04:21] 2025-11-23 06:03:08,080 | INFO     | did not find any defunct processes belonging to 3080036
[2025-11-23 01:04:21] 2025-11-23 06:03:08,132 | INFO     | did not find any defunct processes belonging to 3080036
[2025-11-23 01:04:21] 2025-11-23 06:03:08,142 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 01:04:21] 2025-11-23 06:03:08,143 | INFO     | ready for new job
[2025-11-23 01:04:21] 2025-11-23 06:03:08,143 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 01:04:21] 2025-11-23 06:03:08,167 | INFO     | ***************************************
[2025-11-23 01:04:21] 2025-11-23 06:03:08,167 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 01:04:21] 2025-11-23 06:03:08,167 | INFO     | ***************************************
[2025-11-23 01:04:21] 2025-11-23 06:03:08,167 | INFO     | 
[2025-11-23 01:04:21] 2025-11-23 06:03:08,194 | INFO     | architecture information:
[2025-11-23 01:04:21] 2025-11-23 06:03:08,216 | INFO     | executing command: cat /etc/os-release
[2025-11-23 01:04:21] 2025-11-23 06:03:08,373 | INFO     | cat /etc/os-release:
[2025-11-23 01:04:21] NAME="CentOS Linux"
[2025-11-23 01:04:21] VERSION="7 (Core)"
[2025-11-23 01:04:21] ID="centos"
[2025-11-23 01:04:21] ID_LIKE="rhel fedora"
[2025-11-23 01:04:21] VERSION_ID="7"
[2025-11-23 01:04:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 01:04:21] ANSI_COLOR="0;31"
[2025-11-23 01:04:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 01:04:21] HOME_URL="https://www.centos.org/"
[2025-11-23 01:04:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 01:04:21] 
[2025-11-23 01:04:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 01:04:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 01:04:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 01:04:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 01:04:21] 
[2025-11-23 01:04:21] 2025-11-23 06:03:08,373 | INFO     | ***************************************
[2025-11-23 01:04:21] 2025-11-23 06:03:08,876 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-23 01:04:21] 2025-11-23 06:03:08,962 | INFO     | sufficient remaining disk space (60345548800 B)
[2025-11-23 01:04:21] 2025-11-23 06:03:08,963 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 01:04:21] 2025-11-23 06:03:08,963 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 01:04:21] 2025-11-23 06:03:08,963 | INFO     | update_server=False
[2025-11-23 01:04:21] 2025-11-23 06:03:08,963 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 01:04:21] 2025-11-23 06:03:08,964 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:04:21] 2025-11-23 06:03:08,964 | INFO     | aborting loop
[2025-11-23 01:04:21] 2025-11-23 06:03:08,964 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:04:21] 2025-11-23 06:03:08,965 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 01:04:21] 2025-11-23 06:03:09,362 | INFO     | all data control threads have been joined
[2025-11-23 01:04:21] 2025-11-23 06:03:09,422 | INFO     | all job control threads have been joined
[2025-11-23 01:04:21] 2025-11-23 06:03:09,445 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 01:04:21] 2025-11-23 06:03:09,687 | INFO     | all payload control threads have been joined
[2025-11-23 01:04:21] 2025-11-23 06:03:09,970 | INFO     | [job] retrieve thread has finished
[2025-11-23 01:04:21] 2025-11-23 06:03:09,971 | INFO     | [job] job monitor thread has finished
[2025-11-23 01:04:21] 2025-11-23 06:03:09,971 | INFO     | [job] queue monitor thread has finished
[2025-11-23 01:04:21] 2025-11-23 06:03:09,988 | INFO     | [payload] validate_post thread has finished
[2025-11-23 01:04:21] 2025-11-23 06:03:10,035 | INFO     | [data] copytool_in thread has finished
[2025-11-23 01:04:21] 2025-11-23 06:03:10,159 | INFO     | [payload] failed_post thread has finished
[2025-11-23 01:04:21] 2025-11-23 06:03:10,382 | INFO     | [data] control thread has finished
[2025-11-23 01:04:21] 2025-11-23 06:03:10,441 | INFO     | [job] control thread has finished
[2025-11-23 01:04:21] 2025-11-23 06:03:10,712 | INFO     | [payload] control thread has finished
[2025-11-23 01:04:21] 2025-11-23 06:03:10,829 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 01:04:21] 2025-11-23 06:03:11,070 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 01:04:21] 2025-11-23 06:03:11,077 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 01:04:21] 2025-11-23 06:03:11,078 | INFO     | [job] validate thread has finished
[2025-11-23 01:04:21] 2025-11-23 06:03:11,087 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 01:04:21] 2025-11-23 06:03:11,491 | INFO     | [data] copytool_out thread has finished
[2025-11-23 01:04:21] 2025-11-23 06:03:12,991 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 01:04:21] 2025-11-23 06:03:36,940 | INFO     | PID=3064401 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 01:04:21] 2025-11-23 06:03:36,940 | INFO     | .. there are 17 such processes running
[2025-11-23 01:04:21] 2025-11-23 06:03:36,945 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 01:04:21] 2025-11-23 06:03:36,946 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 01:04:21] 2025-11-23 06:03:36,946 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 01:04:21] 2025-11-23 06:03:52,191 | INFO     | [monitor] cgroup control has ended
[2025-11-23 01:04:21] 2025-11-23 06:03:53,429 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139678810498880)>', '<ExcThread(monitor, started 139678099433216)>']
[2025-11-23 01:04:21] 2025-11-23 06:03:54,152 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 01:04:21] 2025-11-23 06:03:54,152 | INFO     | [monitor] control thread has ended
[2025-11-23 01:04:21] 2025-11-23 06:03:58,460 | INFO     | all workflow threads have been joined
[2025-11-23 01:04:21] 2025-11-23 06:03:58,461 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 01:04:21] 2025-11-23 06:03:58,461 | INFO     | traces error code: 0
[2025-11-23 01:04:21] 2025-11-23 06:03:58,461 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 01:04:21] 2025-11-23 06:03:59,309 [wrapper] ==== pilot stdout END ====
[2025-11-23 01:04:21] 2025-11-23 06:03:59,329 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 01:04:21] 2025-11-23 06:03:59,346 [wrapper] pilotpid: 3064401
[2025-11-23 01:04:21] 2025-11-23 06:03:59,373 [wrapper] Pilot exit status: 0
[2025-11-23 01:04:21] 2025-11-23 06:03:59,497 [wrapper] pandaids: 6893861999
[2025-11-23 01:04:21] 2025-11-23 06:04:00,022 [wrapper] cleanup supervisor_pilot 3895192 3064402
[2025-11-23 01:04:21] 2025-11-23 06:04:00,026 [wrapper] Test setup, not cleaning
[2025-11-23 01:04:21] 2025-11-23 06:04:00,029 [wrapper] apfmon messages muted
[2025-11-23 01:04:21] 2025-11-23 06:04:00,035 [wrapper] ==== wrapper stdout END ====
[2025-11-23 01:04:21] 2025-11-23 06:04:00,064 [wrapper] ==== wrapper stderr END ====
[2025-11-23 01:04:21]  *** Error codes and diagnostics ***
[2025-11-23 01:04:21]     "exeErrorCode": 0,
[2025-11-23 01:04:21]     "exeErrorDiag": "",
[2025-11-23 01:04:21]     "pilotErrorCode": 0,
[2025-11-23 01:04:21]     "pilotErrorDiag": "",
[2025-11-23 01:04:21]  *** Listing of results directory ***
[2025-11-23 01:04:21] total 1353196
[2025-11-23 01:04:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 09:06 pilot3.tar.gz
[2025-11-23 01:04:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 09:09 queuedata.json
[2025-11-23 01:04:21] -rwx------. 1 boincer umatlas     36292 Nov 20 09:09 runpilot2-wrapper.sh
[2025-11-23 01:04:21] -rw-r--r--. 1 boincer umatlas       100 Nov 21 03:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 01:04:21] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 03:39 run_atlas
[2025-11-23 01:04:21] -rw-r--r--. 1 boincer umatlas       105 Nov 21 03:39 job.xml
[2025-11-23 01:04:21] -rw-r--r--. 2 boincer umatlas 412244018 Nov 21 03:39 EVNT.47493127._000585.pool.root.1
[2025-11-23 01:04:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 03:39 start_atlas.sh
[2025-11-23 01:04:21] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 03:39 shared
[2025-11-23 01:04:21] -rw-r--r--. 2 boincer umatlas    590102 Nov 21 03:39 input.tar.gz
[2025-11-23 01:04:21] -rw-r--r--. 1 boincer umatlas         0 Nov 21 03:39 boinc_lockfile
[2025-11-23 01:04:21] -rw-r--r--. 1 boincer umatlas      2786 Nov 21 03:39 pandaJob.out
[2025-11-23 01:04:21] -rw-------. 1 boincer umatlas        57 Nov 21 03:40 setup.sh.local
[2025-11-23 01:04:21] -rw-------. 1 boincer umatlas    989817 Nov 21 03:40 agis_schedconf.cvmfs.json
[2025-11-23 01:04:21] drwx------. 5 boincer umatlas      4096 Nov 21 03:40 pilot3
[2025-11-23 01:04:21] -rw-r--r--. 1 boincer umatlas       533 Nov 22 23:56 boinc_task_state.xml
[2025-11-23 01:04:21] -rw-------. 1 boincer umatlas 924115565 Nov 23 00:52 HITS.47523449._005843.pool.root.1
[2025-11-23 01:04:21] -rw-------. 1 boincer umatlas      1083 Nov 23 01:02 memory_monitor_summary.json
[2025-11-23 01:04:21] -rw-r--r--. 1 boincer umatlas      6615 Nov 23 01:02 init_data.xml
[2025-11-23 01:04:21] -rw-------. 1 boincer umatlas   1526164 Nov 23 01:02 agis_ddmendpoints.agis.ALL.json
[2025-11-23 01:04:21] -rw-------. 1 boincer umatlas   3267946 Nov 23 01:02 log.47523449._005843.job.log.tgz.1
[2025-11-23 01:04:21] -rw-------. 1 boincer umatlas      8675 Nov 23 01:03 heartbeat.json
[2025-11-23 01:04:21] -rw-------. 1 boincer umatlas        95 Nov 23 01:03 pilot_heartbeat.json
[2025-11-23 01:04:21] -rw-------. 1 boincer umatlas      4824 Nov 23 01:03 pilotlog.txt
[2025-11-23 01:04:21] -rw-------. 1 boincer umatlas  19426859 Nov 23 01:04 log.47523449._005843.job.log.1
[2025-11-23 01:04:21] -rw-------. 1 boincer umatlas       353 Nov 23 01:04 output.list
[2025-11-23 01:04:21] -rw-r--r--. 1 boincer umatlas       620 Nov 23 01:04 runtime_log
[2025-11-23 01:04:21] -rw-------. 1 boincer umatlas  22712320 Nov 23 01:04 result.tar.gz
[2025-11-23 01:04:21] -rw-r--r--. 1 boincer umatlas      9339 Nov 23 01:04 runtime_log.err
[2025-11-23 01:04:21] -rw-------. 1 boincer umatlas       668 Nov 23 01:04 ob2KDmNXKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmd2HKDmjU5czm.diag
[2025-11-23 01:04:21] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 01:04 boinc_mmap_file
[2025-11-23 01:04:21] -rw-r--r--. 1 boincer umatlas        29 Nov 23 01:04 wrapper_checkpoint.txt
[2025-11-23 01:04:21] -rw-r--r--. 1 boincer umatlas     21882 Nov 23 01:04 stderr.txt
[2025-11-23 01:04:22] HITS file was successfully produced:
[2025-11-23 01:04:22] -rw-------. 1 boincer umatlas 924115565 Nov 23 00:52 shared/HITS.pool.root.1
[2025-11-23 01:04:22]  *** Contents of shared directory: ***
[2025-11-23 01:04:22] total 1327828
[2025-11-23 01:04:22] -rw-r--r--. 2 boincer umatlas 412244018 Nov 21 03:39 ATLAS.root_0
[2025-11-23 01:04:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 03:39 start_atlas.sh
[2025-11-23 01:04:22] -rw-r--r--. 2 boincer umatlas    590102 Nov 21 03:39 input.tar.gz
[2025-11-23 01:04:22] -rw-------. 1 boincer umatlas 924115565 Nov 23 00:52 HITS.pool.root.1
[2025-11-23 01:04:22] -rw-------. 1 boincer umatlas  22712320 Nov 23 01:04 result.tar.gz
01:04:23 (3058447): run_atlas exited; CPU time 341572.252400
01:04:23 (3058447): called boinc_finish(0)

</stderr_txt>
]]>

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