Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:11 (211568): wrapper (7.7.26015): starting
00:01:11 (211568): wrapper: running run_atlas (--nthreads 9)
[2025-11-22 00:01:11] Arguments: --nthreads 9
[2025-11-22 00:01:11] Threads: 9
[2025-11-22 00:01:11] Checking for CVMFS
[2025-11-22 00:01:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:01:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:01:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:01:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:01:15] 2.13.3.0 9890 23709 358992 153159 2 822 24345941 32935936 23442 16776704 0 150017386 99.798 78272806 35059 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 00:01:15] CVMFS is ok
[2025-11-22 00:01:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:01:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:01:15] Further information can be found at the LHC@home message board.
[2025-11-22 00:01:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:01:15] Checking for apptainer binary...
[2025-11-22 00:01:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:01:15] Running /usr/bin/apptainer --version
[2025-11-22 00:01:15] apptainer version 1.4.4-1.el9
[2025-11-22 00:01:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:01:17] c-8-36.aglt2.org
[2025-11-22 00:01:17] apptainer works
[2025-11-22 00:01:17] Set ATHENA_PROC_NUMBER=9
[2025-11-22 00:01:17] Set ATHENA_CORE_NUMBER=9
[2025-11-22 00:01:17] Starting ATLAS job with PandaID=6893848022
[2025-11-22 00:01:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 08:50:26]  *** The last 200 lines of the pilot log: ***
[2025-11-23 08:50:26] 2025-11-23 13:49:25,931 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:50:26] 2025-11-23 13:49:28,622 | INFO     | monitor loop #5808: job 0:6893848022 is in state 'finished'
[2025-11-23 08:50:26] 2025-11-23 13:49:28,622 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:50:26] 2025-11-23 13:49:31,461 | INFO     | monitor loop #5809: job 0:6893848022 is in state 'finished'
[2025-11-23 08:50:26] 2025-11-23 13:49:31,461 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:50:26] 2025-11-23 13:49:33,043 | INFO     | PID=220527 has CPU usage=11.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 08:50:26] 2025-11-23 13:49:33,044 | INFO     | .. there are 40 such processes running
[2025-11-23 08:50:26] 2025-11-23 13:49:33,999 | INFO     | monitor loop #5810: job 0:6893848022 is in state 'finished'
[2025-11-23 08:50:26] 2025-11-23 13:49:33,999 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:50:26] 2025-11-23 13:49:34,045 | INFO     | time since job start (117973s) is within the limit (172800.0s)
[2025-11-23 08:50:26] 2025-11-23 13:49:36,054 | INFO     | time since job start (117975s) is within the limit (172800.0s)
[2025-11-23 08:50:26] 2025-11-23 13:49:36,546 | INFO     | monitor loop #5811: job 0:6893848022 is in state 'finished'
[2025-11-23 08:50:26] 2025-11-23 13:49:36,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:50:26] 2025-11-23 13:49:38,085 | INFO     | time since job start (117977s) is within the limit (172800.0s)
[2025-11-23 08:50:26] 2025-11-23 13:49:38,414 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 08:50:26] 2025-11-23 13:49:38,507 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.187049999999
[2025-11-23 08:50:26] 2025-11-23 13:49:38,577 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6893848022/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 08:50:26] 2025-11-23 13:49:38,635 | INFO     | extracted standard info from prmon json
[2025-11-23 08:50:26] 2025-11-23 13:49:38,635 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 08:50:26] 2025-11-23 13:49:38,635 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 08:50:26] 2025-11-23 13:49:38,861 | INFO     | fitting pss+swap vs Time
[2025-11-23 08:50:26] 2025-11-23 13:49:38,864 | INFO     | sum of square deviations: 2229305513935.0923
[2025-11-23 08:50:26] 2025-11-23 13:49:39,226 | INFO     | monitor loop #5812: job 0:6893848022 is in state 'finished'
[2025-11-23 08:50:26] 2025-11-23 13:49:39,227 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:50:26] 2025-11-23 13:49:39,235 | INFO     | sum of deviations: 9702523573536.785
[2025-11-23 08:50:26] 2025-11-23 13:49:39,236 | INFO     | mean x: 1763846889.2896373
[2025-11-23 08:50:26] 2025-11-23 13:49:39,236 | INFO     | mean y: 3099141.3331606216
[2025-11-23 08:50:26] 2025-11-23 13:49:39,236 | INFO     | intersect: -7673626151.125122
[2025-11-23 08:50:26] 2025-11-23 13:49:39,253 | INFO     | chi2: 26.62205731442347
[2025-11-23 08:50:26] 2025-11-23 13:49:39,283 | INFO     | sum of square deviations: 2212028563985.3394
[2025-11-23 08:50:26] 2025-11-23 13:49:39,796 | INFO     | sum of deviations: 10391017601972.336
[2025-11-23 08:50:26] 2025-11-23 13:49:39,796 | INFO     | mean x: 1763846736.8057144
[2025-11-23 08:50:26] 2025-11-23 13:49:39,796 | INFO     | mean y: 3105217.169350649
[2025-11-23 08:50:26] 2025-11-23 13:49:39,796 | INFO     | intersect: -8282575532.046832
[2025-11-23 08:50:26] 2025-11-23 13:49:39,799 | INFO     | chi2: 23.530050199108725
[2025-11-23 08:50:26] 2025-11-23 13:49:39,800 | INFO     | current chi2=23.530050199108725 (change=11.614455933274307 %)
[2025-11-23 08:50:26] 2025-11-23 13:49:39,800 | INFO     | right removable region: 1924
[2025-11-23 08:50:26] 2025-11-23 13:49:39,803 | INFO     | sum of square deviations: 2212020923211.501
[2025-11-23 08:50:26] 2025-11-23 13:49:39,999 | INFO     | sum of deviations: 8822206072001.438
[2025-11-23 08:50:26] 2025-11-23 13:49:40,000 | INFO     | mean x: 1763847041.8072727
[2025-11-23 08:50:26] 2025-11-23 13:49:40,000 | INFO     | mean y: 3106908.7963636364
[2025-11-23 08:50:26] 2025-11-23 13:49:40,000 | INFO     | intersect: -7031646659.321688
[2025-11-23 08:50:26] 2025-11-23 13:49:40,003 | INFO     | chi2: 21.873330109902874
[2025-11-23 08:50:26] 2025-11-23 13:49:40,003 | INFO     | current chi2=21.873330109902874 (change=17.837566602892853 %)
[2025-11-23 08:50:26] 2025-11-23 13:49:40,003 | INFO     | left removable region: 10
[2025-11-23 08:50:26] 2025-11-23 13:49:40,006 | INFO     | sum of square deviations: 2174318905976.416
[2025-11-23 08:50:26] 2025-11-23 13:49:40,113 | INFO     | sum of deviations: 8852881321514.648
[2025-11-23 08:50:26] 2025-11-23 13:49:40,113 | INFO     | mean x: 1763847011.3448277
[2025-11-23 08:50:26] 2025-11-23 13:49:40,114 | INFO     | mean y: 3121208.1368861026
[2025-11-23 08:50:26] 2025-11-23 13:49:40,114 | INFO     | intersect: -7178497007.030964
[2025-11-23 08:50:26] 2025-11-23 13:49:40,135 | INFO     | chi2: 14.497908363578354
[2025-11-23 08:50:26] 2025-11-23 13:49:40,135 | INFO     | current memory leak: 4.07 B/s (using 1914 data points, chi2=14.50)
[2025-11-23 08:50:26] 2025-11-23 13:49:40,164 | INFO     | could have reported an average CPU frequency of 2600 MHz (67 samples)
[2025-11-23 08:50:26] 2025-11-23 13:49:40,165 | INFO     | ..............................
[2025-11-23 08:50:26] 2025-11-23 13:49:40,165 | INFO     | . Timing measurements:
[2025-11-23 08:50:26] 2025-11-23 13:49:40,165 | INFO     | . get job = 0 s
[2025-11-23 08:50:26] 2025-11-23 13:49:40,166 | INFO     | . initial setup = 16 s
[2025-11-23 08:50:26] 2025-11-23 13:49:40,166 | INFO     | . payload setup = 81 s
[2025-11-23 08:50:26] 2025-11-23 13:49:40,166 | INFO     | . stage-in = 0 s
[2025-11-23 08:50:26] 2025-11-23 13:49:40,166 | INFO     | . payload execution = 117739 s
[2025-11-23 08:50:26] 2025-11-23 13:49:40,166 | INFO     | . stage-out = 14 s
[2025-11-23 08:50:26] 2025-11-23 13:49:40,166 | INFO     | . log creation = 1 s
[2025-11-23 08:50:26] 2025-11-23 13:49:40,166 | INFO     | ..............................
[2025-11-23 08:50:26] 2025-11-23 13:49:40,264 | INFO     | time since job start (117979s) is within the limit (172800.0s)
[2025-11-23 08:50:26] 2025-11-23 13:49:40,458 | INFO     | 
[2025-11-23 08:50:26] 2025-11-23 13:49:40,458 | INFO     | job summary report
[2025-11-23 08:50:26] 2025-11-23 13:49:40,458 | INFO     | --------------------------------------------------
[2025-11-23 08:50:26] 2025-11-23 13:49:40,458 | INFO     | PanDA job id: 6893848022
[2025-11-23 08:50:26] 2025-11-23 13:49:40,458 | INFO     | task id: 47523449
[2025-11-23 08:50:26] 2025-11-23 13:49:40,459 | INFO     | errors: (none)
[2025-11-23 08:50:26] 2025-11-23 13:49:40,459 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 08:50:26] 2025-11-23 13:49:40,459 | INFO     | pilot state: finished 
[2025-11-23 08:50:26] 2025-11-23 13:49:40,459 | INFO     | transexitcode: 0
[2025-11-23 08:50:26] 2025-11-23 13:49:40,459 | INFO     | exeerrorcode: 0
[2025-11-23 08:50:26] 2025-11-23 13:49:40,459 | INFO     | exeerrordiag: 
[2025-11-23 08:50:26] 2025-11-23 13:49:40,459 | INFO     | exitcode: 0
[2025-11-23 08:50:26] 2025-11-23 13:49:40,459 | INFO     | exitmsg: OK
[2025-11-23 08:50:26] 2025-11-23 13:49:40,459 | INFO     | cpuconsumptiontime: 294345 s
[2025-11-23 08:50:26] 2025-11-23 13:49:40,459 | INFO     | nevents: 1000
[2025-11-23 08:50:26] 2025-11-23 13:49:40,459 | INFO     | neventsw: 0
[2025-11-23 08:50:26] 2025-11-23 13:49:40,460 | INFO     | pid: 237208
[2025-11-23 08:50:26] 2025-11-23 13:49:40,460 | INFO     | pgrp: 237208
[2025-11-23 08:50:26] 2025-11-23 13:49:40,460 | INFO     | corecount: 9
[2025-11-23 08:50:26] 2025-11-23 13:49:40,460 | INFO     | event service: False
[2025-11-23 08:50:26] 2025-11-23 13:49:40,460 | INFO     | sizes: {0: 2298580, 2: 2298636, 3: 2298664, 4: 2298692, 6: 2298720, 7: 2298748, 19: 2299075, 30: 2299103, 41: 2299131, 53: 2299159, 58: 2299449, 64: 2299757, 11782
[2025-11-23 08:50:26] 2025-11-23 13:49:40,460 | INFO     | --------------------------------------------------
[2025-11-23 08:50:26] 2025-11-23 13:49:40,460 | INFO     | 
[2025-11-23 08:50:26] 2025-11-23 13:49:40,460 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-23 08:50:26] 2025-11-23 13:49:40,594 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,595 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,595 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,595 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,595 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,595 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,595 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,595 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,596 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,596 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,596 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,596 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,596 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,596 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,596 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,596 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,596 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,597 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 08:50:26] 2025-11-23 13:49:40,597 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,597 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 08:50:26] 2025-11-23 13:49:40,597 | INFO     | job 6893848022 has completed (purged errors)
[2025-11-23 08:50:26] 2025-11-23 13:49:40,597 | INFO     | overall cleanup function is called
[2025-11-23 08:50:26] 2025-11-23 13:49:41,637 | INFO     | --- collectZombieJob: --- 10, [237208]
[2025-11-23 08:50:26] 2025-11-23 13:49:41,637 | INFO     | zombie collector waiting for pid 237208
[2025-11-23 08:50:26] 2025-11-23 13:49:41,637 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 08:50:26] 2025-11-23 13:49:41,637 | INFO     | collected zombie processes
[2025-11-23 08:50:26] 2025-11-23 13:49:41,637 | INFO     | will attempt to kill all subprocesses of pid=237208
[2025-11-23 08:50:26] 2025-11-23 13:49:42,710 | INFO     | process IDs to be killed: [237208] (in reverse order)
[2025-11-23 08:50:26] 2025-11-23 13:49:44,609 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 08:50:26] 2025-11-23 13:49:44,609 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 08:50:26] 2025-11-23 13:49:44,731 | INFO     | did not find any defunct processes belonging to 237208
[2025-11-23 08:50:26] 2025-11-23 13:49:44,761 | INFO     | did not find any defunct processes belonging to 237208
[2025-11-23 08:50:26] 2025-11-23 13:49:44,767 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 08:50:26] 2025-11-23 13:49:44,767 | INFO     | ready for new job
[2025-11-23 08:50:26] 2025-11-23 13:49:44,767 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 08:50:26] 2025-11-23 13:49:44,782 | INFO     | ***************************************
[2025-11-23 08:50:26] 2025-11-23 13:49:44,782 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 08:50:26] 2025-11-23 13:49:44,782 | INFO     | ***************************************
[2025-11-23 08:50:26] 2025-11-23 13:49:44,783 | INFO     | 
[2025-11-23 08:50:26] 2025-11-23 13:49:44,784 | INFO     | architecture information:
[2025-11-23 08:50:26] 2025-11-23 13:49:44,788 | INFO     | executing command: cat /etc/os-release
[2025-11-23 08:50:26] 2025-11-23 13:49:44,848 | INFO     | cat /etc/os-release:
[2025-11-23 08:50:26] NAME="CentOS Linux"
[2025-11-23 08:50:26] VERSION="7 (Core)"
[2025-11-23 08:50:26] ID="centos"
[2025-11-23 08:50:26] ID_LIKE="rhel fedora"
[2025-11-23 08:50:26] VERSION_ID="7"
[2025-11-23 08:50:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 08:50:26] ANSI_COLOR="0;31"
[2025-11-23 08:50:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 08:50:26] HOME_URL="https://www.centos.org/"
[2025-11-23 08:50:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 08:50:26] 
[2025-11-23 08:50:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 08:50:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 08:50:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 08:50:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 08:50:26] 
[2025-11-23 08:50:26] 2025-11-23 13:49:44,848 | INFO     | ***************************************
[2025-11-23 08:50:26] 2025-11-23 13:49:45,357 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-23 08:50:26] 2025-11-23 13:49:45,408 | INFO     | sufficient remaining disk space (73058484224 B)
[2025-11-23 08:50:26] 2025-11-23 13:49:45,409 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 08:50:26] 2025-11-23 13:49:45,409 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 08:50:26] 2025-11-23 13:49:45,409 | INFO     | update_server=False
[2025-11-23 08:50:26] 2025-11-23 13:49:45,409 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 08:50:26] 2025-11-23 13:49:45,410 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 08:50:26] 2025-11-23 13:49:45,413 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 08:50:26] 2025-11-23 13:49:45,413 | INFO     | aborting loop
[2025-11-23 08:50:26] 2025-11-23 13:49:45,501 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 08:50:26] 2025-11-23 13:49:45,806 | INFO     | all payload control threads have been joined
[2025-11-23 08:50:26] 2025-11-23 13:49:45,807 | INFO     | all job control threads have been joined
[2025-11-23 08:50:26] 2025-11-23 13:49:46,347 | INFO     | all data control threads have been joined
[2025-11-23 08:50:26] 2025-11-23 13:49:46,419 | INFO     | [job] job monitor thread has finished
[2025-11-23 08:50:26] 2025-11-23 13:49:46,462 | INFO     | [job] retrieve thread has finished
[2025-11-23 08:50:26] 2025-11-23 13:49:46,508 | INFO     | [job] queue monitor thread has finished
[2025-11-23 08:50:26] 2025-11-23 13:49:46,809 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 08:50:26] 2025-11-23 13:49:46,811 | INFO     | [payload] control thread has finished
[2025-11-23 08:50:26] 2025-11-23 13:49:46,817 | INFO     | [job] control thread has finished
[2025-11-23 08:50:26] 2025-11-23 13:49:46,850 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 08:50:26] 2025-11-23 13:49:47,026 | INFO     | [payload] validate_post thread has finished
[2025-11-23 08:50:26] 2025-11-23 13:49:47,208 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 08:50:26] 2025-11-23 13:49:47,299 | INFO     | [payload] failed_post thread has finished
[2025-11-23 08:50:26] 2025-11-23 13:49:47,322 | INFO     | [job] validate thread has finished
[2025-11-23 08:50:26] 2025-11-23 13:49:47,353 | INFO     | [data] control thread has finished
[2025-11-23 08:50:26] 2025-11-23 13:49:47,468 | INFO     | [data] copytool_out thread has finished
[2025-11-23 08:50:26] 2025-11-23 13:49:47,585 | INFO     | [data] copytool_in thread has finished
[2025-11-23 08:50:26] 2025-11-23 13:49:47,599 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 08:50:26] 2025-11-23 13:49:47,824 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 08:50:26] 2025-11-23 13:49:51,218 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 08:50:26] 2025-11-23 13:50:17,365 | INFO     | PID=220527 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 08:50:26] 2025-11-23 13:50:17,365 | INFO     | .. there are 40 such processes running
[2025-11-23 08:50:26] 2025-11-23 13:50:17,365 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 08:50:26] 2025-11-23 13:50:17,365 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 08:50:26] 2025-11-23 13:50:17,365 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 08:50:26] 2025-11-23 13:50:17,649 | INFO     | [monitor] cgroup control has ended
[2025-11-23 08:50:26] 2025-11-23 13:50:19,708 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140677222741824)>', '<ExcThread(monitor, started 140676738045696)>']
[2025-11-23 08:50:26] 2025-11-23 13:50:20,384 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 08:50:26] 2025-11-23 13:50:20,384 | INFO     | [monitor] control thread has ended
[2025-11-23 08:50:26] 2025-11-23 13:50:24,774 | INFO     | all workflow threads have been joined
[2025-11-23 08:50:26] 2025-11-23 13:50:24,774 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 08:50:26] 2025-11-23 13:50:24,775 | INFO     | traces error code: 0
[2025-11-23 08:50:26] 2025-11-23 13:50:24,775 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 08:50:26] 2025-11-23 13:50:25,740 [wrapper] ==== pilot stdout END ====
[2025-11-23 08:50:26] 2025-11-23 13:50:25,743 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 08:50:26] 2025-11-23 13:50:25,746 [wrapper] pilotpid: 220527
[2025-11-23 08:50:26] 2025-11-23 13:50:25,749 [wrapper] Pilot exit status: 0
[2025-11-23 08:50:26] 2025-11-23 13:50:25,763 [wrapper] pandaids: 6893848022
[2025-11-23 08:50:26] 2025-11-23 13:50:25,841 [wrapper] cleanup supervisor_pilot 2240696 220529
[2025-11-23 08:50:26] 2025-11-23 13:50:25,844 [wrapper] Test setup, not cleaning
[2025-11-23 08:50:26] 2025-11-23 13:50:25,862 [wrapper] apfmon messages muted
[2025-11-23 08:50:26] 2025-11-23 13:50:25,897 [wrapper] ==== wrapper stdout END ====
[2025-11-23 08:50:26] 2025-11-23 13:50:25,900 [wrapper] ==== wrapper stderr END ====
[2025-11-23 08:50:26]  *** Error codes and diagnostics ***
[2025-11-23 08:50:26]     "exeErrorCode": 0,
[2025-11-23 08:50:26]     "exeErrorDiag": "",
[2025-11-23 08:50:26]     "pilotErrorCode": 0,
[2025-11-23 08:50:26]     "pilotErrorDiag": "",
[2025-11-23 08:50:26]  *** Listing of results directory ***
[2025-11-23 08:50:26] total 1323444
[2025-11-23 08:50:26] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-23 08:50:26] -rwx------. 1 boincer umatlas     36292 Nov 20 05:27 runpilot2-wrapper.sh
[2025-11-23 08:50:26] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:27 queuedata.json
[2025-11-23 08:50:26] -rw-r--r--. 1 boincer umatlas       100 Nov 22 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 08:50:26] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 00:01 run_atlas
[2025-11-23 08:50:26] -rw-r--r--. 1 boincer umatlas       105 Nov 22 00:01 job.xml
[2025-11-23 08:50:26] -rw-r--r--. 2 boincer umatlas 409568154 Nov 22 00:01 EVNT.47493127._000253.pool.root.1
[2025-11-23 08:50:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:01 start_atlas.sh
[2025-11-23 08:50:26] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 00:01 shared
[2025-11-23 08:50:26] -rw-r--r--. 2 boincer umatlas    590103 Nov 22 00:01 input.tar.gz
[2025-11-23 08:50:26] -rw-r--r--. 1 boincer umatlas         0 Nov 22 00:01 boinc_lockfile
[2025-11-23 08:50:26] -rw-r--r--. 1 boincer umatlas      2786 Nov 22 00:01 pandaJob.out
[2025-11-23 08:50:26] -rw-------. 1 boincer umatlas        57 Nov 22 00:01 setup.sh.local
[2025-11-23 08:50:26] -rw-------. 1 boincer umatlas    989752 Nov 22 00:03 agis_schedconf.cvmfs.json
[2025-11-23 08:50:26] drwx------. 5 boincer umatlas      4096 Nov 22 00:03 pilot3
[2025-11-23 08:50:26] -rw-r--r--. 1 boincer umatlas       533 Nov 23 08:27 boinc_task_state.xml
[2025-11-23 08:50:26] -rw-r--r--. 1 boincer umatlas      6660 Nov 23 08:45 init_data.xml
[2025-11-23 08:50:26] -rw-------. 1 boincer umatlas 909617410 Nov 23 08:47 HITS.47523449._002530.pool.root.1
[2025-11-23 08:50:26] -rw-------. 1 boincer umatlas      1073 Nov 23 08:48 memory_monitor_summary.json
[2025-11-23 08:50:26] -rw-------. 1 boincer umatlas   1526164 Nov 23 08:49 agis_ddmendpoints.agis.ALL.json
[2025-11-23 08:50:26] -rw-------. 1 boincer umatlas   2834094 Nov 23 08:49 log.47523449._002530.job.log.tgz.1
[2025-11-23 08:50:26] -rw-------. 1 boincer umatlas        95 Nov 23 08:49 pilot_heartbeat.json
[2025-11-23 08:50:26] -rw-------. 1 boincer umatlas      8669 Nov 23 08:49 heartbeat.json
[2025-11-23 08:50:26] -rw-------. 1 boincer umatlas      4823 Nov 23 08:50 pilotlog.txt
[2025-11-23 08:50:26] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 08:50 boinc_mmap_file
[2025-11-23 08:50:26] -rw-------. 1 boincer umatlas  13211632 Nov 23 08:50 log.47523449._002530.job.log.1
[2025-11-23 08:50:26] -rw-------. 1 boincer umatlas       353 Nov 23 08:50 output.list
[2025-11-23 08:50:26] -rw-r--r--. 1 boincer umatlas        29 Nov 23 08:50 wrapper_checkpoint.txt
[2025-11-23 08:50:26] -rw-r--r--. 1 boincer umatlas       620 Nov 23 08:50 runtime_log
[2025-11-23 08:50:26] -rw-------. 1 boincer umatlas  16066560 Nov 23 08:50 result.tar.gz
[2025-11-23 08:50:26] -rw-r--r--. 1 boincer umatlas      9334 Nov 23 08:50 runtime_log.err
[2025-11-23 08:50:26] -rw-------. 1 boincer umatlas       666 Nov 23 08:50 Mq0KDmp3Gg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvTHKDmOfvEGm.diag
[2025-11-23 08:50:26] -rw-r--r--. 1 boincer umatlas     21910 Nov 23 08:50 stderr.txt
[2025-11-23 08:50:27] HITS file was successfully produced:
[2025-11-23 08:50:27] -rw-------. 1 boincer umatlas 909617410 Nov 23 08:47 shared/HITS.pool.root.1
[2025-11-23 08:50:27]  *** Contents of shared directory: ***
[2025-11-23 08:50:27] total 1304568
[2025-11-23 08:50:27] -rw-r--r--. 2 boincer umatlas 409568154 Nov 22 00:01 ATLAS.root_0
[2025-11-23 08:50:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:01 start_atlas.sh
[2025-11-23 08:50:27] -rw-r--r--. 2 boincer umatlas    590103 Nov 22 00:01 input.tar.gz
[2025-11-23 08:50:27] -rw-------. 1 boincer umatlas 909617410 Nov 23 08:47 HITS.pool.root.1
[2025-11-23 08:50:27] -rw-------. 1 boincer umatlas  16066560 Nov 23 08:50 result.tar.gz
08:50:28 (211568): run_atlas exited; CPU time 297343.371530
08:50:28 (211568): called boinc_finish(0)

</stderr_txt>
]]>

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