Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:29:23 (3427656): wrapper (7.7.26015): starting
00:29:23 (3427656): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 00:29:23] Arguments: --nthreads 8
[2025-11-21 00:29:23] Threads: 8
[2025-11-21 00:29:23] Checking for CVMFS
[2025-11-21 00:29:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:29:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:29:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:29:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:29:25] 2.13.2.0 9388 26226 177436 153110 2 64 35646831 39288832 5541 16776704 0 15101221 99.618 11969359 34262 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 00:29:25] CVMFS is ok
[2025-11-21 00:29:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:29:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:29:25] Further information can be found at the LHC@home message board.
[2025-11-21 00:29:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:29:25] Checking for apptainer binary...
[2025-11-21 00:29:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:29:25] Running /usr/bin/apptainer --version
[2025-11-21 00:29:25] apptainer version 1.4.4-1.el9
[2025-11-21 00:29:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:29:26] c-210-25.aglt2.org
[2025-11-21 00:29:26] apptainer works
[2025-11-21 00:29:26] Set ATHENA_PROC_NUMBER=8
[2025-11-21 00:29:26] Set ATHENA_CORE_NUMBER=8
[2025-11-21 00:29:26] Starting ATLAS job with PandaID=6893876899
[2025-11-21 00:29:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 12:02:17]  *** The last 200 lines of the pilot log: ***
[2025-11-21 12:02:17] 2025-11-21 17:01:42,860 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 12:02:17] 2025-11-21 17:01:43,693 | INFO     | time since job start (41516s) is within the limit (172800.0s)
[2025-11-21 12:02:17] 2025-11-21 17:01:45,015 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 12:02:17] 2025-11-21 17:01:45,021 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1697999999997
[2025-11-21 12:02:17] 2025-11-21 17:01:45,028 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6893876899/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 12:02:17] 2025-11-21 17:01:45,029 | INFO     | extracted standard info from prmon json
[2025-11-21 12:02:17] 2025-11-21 17:01:45,029 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 12:02:17] 2025-11-21 17:01:45,029 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 12:02:17] 2025-11-21 17:01:45,041 | INFO     | fitting pss+swap vs Time
[2025-11-21 12:02:17] 2025-11-21 17:01:45,042 | INFO     | sum of square deviations: 97495736838.92795
[2025-11-21 12:02:17] 2025-11-21 17:01:45,053 | INFO     | sum of deviations: 881224147687.1998
[2025-11-21 12:02:17] 2025-11-21 17:01:45,053 | INFO     | mean x: 1763723759.210294
[2025-11-21 12:02:17] 2025-11-21 17:01:45,054 | INFO     | mean y: 2873950.6
[2025-11-21 12:02:17] 2025-11-21 17:01:45,054 | INFO     | intersect: -15938704797.950804
[2025-11-21 12:02:17] 2025-11-21 17:01:45,055 | INFO     | chi2: 7.893287674116167
[2025-11-21 12:02:17] 2025-11-21 17:01:45,056 | INFO     | sum of square deviations: 95360923191.38644
[2025-11-21 12:02:17] 2025-11-21 17:01:45,066 | INFO     | sum of deviations: 1126456435609.5815
[2025-11-21 12:02:17] 2025-11-21 17:01:45,066 | INFO     | mean x: 1763723606.7155557
[2025-11-21 12:02:17] 2025-11-21 17:01:45,066 | INFO     | mean y: 2891467.1540740742
[2025-11-21 12:02:17] 2025-11-21 17:01:45,066 | INFO     | intersect: -20831195923.484104
[2025-11-21 12:02:17] 2025-11-21 17:01:45,067 | INFO     | chi2: 4.341567653059023
[2025-11-21 12:02:17] 2025-11-21 17:01:45,067 | INFO     | current chi2=4.341567653059023 (change=44.996713254275754 %)
[2025-11-21 12:02:17] 2025-11-21 17:01:45,068 | INFO     | sum of square deviations: 93257505481.30751
[2025-11-21 12:02:17] 2025-11-21 17:01:45,078 | INFO     | sum of deviations: 1182976742848.0132
[2025-11-21 12:02:17] 2025-11-21 17:01:45,078 | INFO     | mean x: 1763723454.2208955
[2025-11-21 12:02:17] 2025-11-21 17:01:45,078 | INFO     | mean y: 2895549.5134328357
[2025-11-21 12:02:17] 2025-11-21 17:01:45,078 | INFO     | intersect: -22370036434.78769
[2025-11-21 12:02:17] 2025-11-21 17:01:45,079 | INFO     | chi2: 3.9107103164921373
[2025-11-21 12:02:17] 2025-11-21 17:01:45,079 | INFO     | current chi2=3.9107103164921373 (change=9.924003746971636 %)
[2025-11-21 12:02:17] 2025-11-21 17:01:45,079 | INFO     | right removable region: 669
[2025-11-21 12:02:17] 2025-11-21 17:01:45,080 | INFO     | sum of square deviations: 95360628561.38644
[2025-11-21 12:02:17] 2025-11-21 17:01:45,090 | INFO     | sum of deviations: 632032052228.9375
[2025-11-21 12:02:17] 2025-11-21 17:01:45,090 | INFO     | mean x: 1763723911.7155557
[2025-11-21 12:02:17] 2025-11-21 17:01:45,090 | INFO     | mean y: 2891739.7392592593
[2025-11-21 12:02:17] 2025-11-21 17:01:45,090 | INFO     | intersect: -11686733845.82667
[2025-11-21 12:02:17] 2025-11-21 17:01:45,091 | INFO     | chi2: 4.401021063252713
[2025-11-21 12:02:17] 2025-11-21 17:01:45,091 | INFO     | current chi2=4.401021063252713 (change=44.24349846408572 %)
[2025-11-21 12:02:17] 2025-11-21 17:01:45,092 | INFO     | sum of square deviations: 93257121730.47914
[2025-11-21 12:02:17] 2025-11-21 17:01:45,102 | INFO     | sum of deviations: 563552942508.679
[2025-11-21 12:02:17] 2025-11-21 17:01:45,102 | INFO     | mean x: 1763724064.2134328
[2025-11-21 12:02:17] 2025-11-21 17:01:45,102 | INFO     | mean y: 2896693.813432836
[2025-11-21 12:02:17] 2025-11-21 17:01:45,103 | INFO     | intersect: -10655290774.522232
[2025-11-21 12:02:17] 2025-11-21 17:01:45,104 | INFO     | chi2: 4.119221636603722
[2025-11-21 12:02:17] 2025-11-21 17:01:45,104 | INFO     | current chi2=4.119221636603722 (change=6.403046533949519 %)
[2025-11-21 12:02:17] 2025-11-21 17:01:45,104 | INFO     | left removable region: 20
[2025-11-21 12:02:17] 2025-11-21 17:01:45,105 | INFO     | sum of square deviations: 84760135778.96136
[2025-11-21 12:02:17] 2025-11-21 17:01:45,115 | INFO     | sum of deviations: 806803190461.452
[2025-11-21 12:02:17] 2025-11-21 17:01:45,116 | INFO     | mean x: 1763724033.7195685
[2025-11-21 12:02:17] 2025-11-21 17:01:45,116 | INFO     | mean y: 2922834.3266563946
[2025-11-21 12:02:17] 2025-11-21 17:01:45,116 | INFO     | intersect: -16785372328.500257
[2025-11-21 12:02:17] 2025-11-21 17:01:45,117 | INFO     | chi2: 0.053256753943335074
[2025-11-21 12:02:17] 2025-11-21 17:01:45,117 | INFO     | current memory leak: 9.52 B/s (using 649 data points, chi2=0.05)
[2025-11-21 12:02:17] 2025-11-21 17:01:45,118 | INFO     | could have reported an average CPU frequency of 2600 MHz (26 samples)
[2025-11-21 12:02:17] 2025-11-21 17:01:45,118 | INFO     | ..............................
[2025-11-21 12:02:17] 2025-11-21 17:01:45,118 | INFO     | . Timing measurements:
[2025-11-21 12:02:17] 2025-11-21 17:01:45,118 | INFO     | . get job = 0 s
[2025-11-21 12:02:17] 2025-11-21 17:01:45,118 | INFO     | . initial setup = 3 s
[2025-11-21 12:02:17] 2025-11-21 17:01:45,118 | INFO     | . payload setup = 20 s
[2025-11-21 12:02:17] 2025-11-21 17:01:45,118 | INFO     | . stage-in = 0 s
[2025-11-21 12:02:17] 2025-11-21 17:01:45,119 | INFO     | . payload execution = 41454 s
[2025-11-21 12:02:17] 2025-11-21 17:01:45,119 | INFO     | . stage-out = 3 s
[2025-11-21 12:02:17] 2025-11-21 17:01:45,119 | INFO     | . log creation = 0 s
[2025-11-21 12:02:17] 2025-11-21 17:01:45,119 | INFO     | ..............................
[2025-11-21 12:02:17] 2025-11-21 17:01:45,210 | INFO     | 
[2025-11-21 12:02:17] 2025-11-21 17:01:45,211 | INFO     | job summary report
[2025-11-21 12:02:17] 2025-11-21 17:01:45,211 | INFO     | --------------------------------------------------
[2025-11-21 12:02:17] 2025-11-21 17:01:45,211 | INFO     | PanDA job id: 6893876899
[2025-11-21 12:02:17] 2025-11-21 17:01:45,211 | INFO     | task id: 47523449
[2025-11-21 12:02:17] 2025-11-21 17:01:45,211 | INFO     | errors: (none)
[2025-11-21 12:02:17] 2025-11-21 17:01:45,211 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 12:02:17] 2025-11-21 17:01:45,211 | INFO     | pilot state: finished 
[2025-11-21 12:02:17] 2025-11-21 17:01:45,211 | INFO     | transexitcode: 0
[2025-11-21 12:02:17] 2025-11-21 17:01:45,211 | INFO     | exeerrorcode: 0
[2025-11-21 12:02:17] 2025-11-21 17:01:45,211 | INFO     | exeerrordiag: 
[2025-11-21 12:02:17] 2025-11-21 17:01:45,211 | INFO     | exitcode: 0
[2025-11-21 12:02:17] 2025-11-21 17:01:45,212 | INFO     | exitmsg: OK
[2025-11-21 12:02:17] 2025-11-21 17:01:45,212 | INFO     | cpuconsumptiontime: 286147 s
[2025-11-21 12:02:17] 2025-11-21 17:01:45,212 | INFO     | nevents: 1000
[2025-11-21 12:02:17] 2025-11-21 17:01:45,212 | INFO     | neventsw: 0
[2025-11-21 12:02:17] 2025-11-21 17:01:45,212 | INFO     | pid: 3439167
[2025-11-21 12:02:17] 2025-11-21 17:01:45,212 | INFO     | pgrp: 3439167
[2025-11-21 12:02:17] 2025-11-21 17:01:45,212 | INFO     | corecount: 8
[2025-11-21 12:02:17] 2025-11-21 17:01:45,212 | INFO     | event service: False
[2025-11-21 12:02:17] 2025-11-21 17:01:45,212 | INFO     | sizes: {0: 2298585, 1: 2298784, 11: 2299046, 12: 2299074, 41479: 2342744, 41483: 2351922, 41488: 2352112}
[2025-11-21 12:02:17] 2025-11-21 17:01:45,212 | INFO     | --------------------------------------------------
[2025-11-21 12:02:17] 2025-11-21 17:01:45,212 | INFO     | 
[2025-11-21 12:02:17] 2025-11-21 17:01:45,213 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-21 12:02:17] 2025-11-21 17:01:45,231 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,231 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,231 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,232 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,232 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,232 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,232 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,232 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,232 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,232 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,232 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,232 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,232 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,232 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,233 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,233 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,233 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,233 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 12:02:17] 2025-11-21 17:01:45,233 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,233 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 12:02:17] 2025-11-21 17:01:45,233 | INFO     | job 6893876899 has completed (purged errors)
[2025-11-21 12:02:17] 2025-11-21 17:01:45,233 | INFO     | overall cleanup function is called
[2025-11-21 12:02:17] 2025-11-21 17:01:46,249 | INFO     | --- collectZombieJob: --- 10, [3439167]
[2025-11-21 12:02:17] 2025-11-21 17:01:46,249 | INFO     | zombie collector waiting for pid 3439167
[2025-11-21 12:02:17] 2025-11-21 17:01:46,249 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 12:02:17] 2025-11-21 17:01:46,249 | INFO     | collected zombie processes
[2025-11-21 12:02:17] 2025-11-21 17:01:46,249 | INFO     | will attempt to kill all subprocesses of pid=3439167
[2025-11-21 12:02:17] 2025-11-21 17:01:46,539 | INFO     | process IDs to be killed: [3439167] (in reverse order)
[2025-11-21 12:02:17] 2025-11-21 17:01:46,616 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 12:02:17] 2025-11-21 17:01:46,616 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 12:02:17] 2025-11-21 17:01:46,624 | INFO     | did not find any defunct processes belonging to 3439167
[2025-11-21 12:02:17] 2025-11-21 17:01:46,632 | INFO     | did not find any defunct processes belonging to 3439167
[2025-11-21 12:02:17] 2025-11-21 17:01:46,634 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 12:02:17] 2025-11-21 17:01:46,634 | INFO     | ready for new job
[2025-11-21 12:02:17] 2025-11-21 17:01:46,634 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 12:02:17] 2025-11-21 17:01:46,638 | INFO     | ***************************************
[2025-11-21 12:02:17] 2025-11-21 17:01:46,638 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 12:02:17] 2025-11-21 17:01:46,638 | INFO     | ***************************************
[2025-11-21 12:02:17] 2025-11-21 17:01:46,638 | INFO     | 
[2025-11-21 12:02:17] 2025-11-21 17:01:46,640 | INFO     | architecture information:
[2025-11-21 12:02:17] 2025-11-21 17:01:46,641 | INFO     | executing command: cat /etc/os-release
[2025-11-21 12:02:17] 2025-11-21 17:01:46,654 | INFO     | cat /etc/os-release:
[2025-11-21 12:02:17] NAME="CentOS Linux"
[2025-11-21 12:02:17] VERSION="7 (Core)"
[2025-11-21 12:02:17] ID="centos"
[2025-11-21 12:02:17] ID_LIKE="rhel fedora"
[2025-11-21 12:02:17] VERSION_ID="7"
[2025-11-21 12:02:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 12:02:17] ANSI_COLOR="0;31"
[2025-11-21 12:02:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 12:02:17] HOME_URL="https://www.centos.org/"
[2025-11-21 12:02:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 12:02:17] 
[2025-11-21 12:02:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 12:02:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 12:02:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 12:02:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 12:02:17] 
[2025-11-21 12:02:17] 2025-11-21 17:01:46,654 | INFO     | ***************************************
[2025-11-21 12:02:17] 2025-11-21 17:01:47,158 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-21 12:02:17] 2025-11-21 17:01:47,175 | INFO     | sufficient remaining disk space (47909437440 B)
[2025-11-21 12:02:17] 2025-11-21 17:01:47,175 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 12:02:17] 2025-11-21 17:01:47,176 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 12:02:17] 2025-11-21 17:01:47,176 | INFO     | update_server=False
[2025-11-21 12:02:17] 2025-11-21 17:01:47,176 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 12:02:17] 2025-11-21 17:01:47,176 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:02:17] 2025-11-21 17:01:47,176 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 12:02:17] 2025-11-21 17:01:47,177 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:02:17] 2025-11-21 17:01:47,177 | INFO     | aborting loop
[2025-11-21 12:02:17] 2025-11-21 17:01:47,393 | INFO     | all job control threads have been joined
[2025-11-21 12:02:17] 2025-11-21 17:01:47,869 | INFO     | all data control threads have been joined
[2025-11-21 12:02:17] 2025-11-21 17:01:48,143 | INFO     | all payload control threads have been joined
[2025-11-21 12:02:17] 2025-11-21 17:01:48,181 | INFO     | [job] retrieve thread has finished
[2025-11-21 12:02:17] 2025-11-21 17:01:48,181 | INFO     | [job] queue monitor thread has finished
[2025-11-21 12:02:17] 2025-11-21 17:01:48,182 | INFO     | [job] job monitor thread has finished
[2025-11-21 12:02:17] 2025-11-21 17:01:48,220 | INFO     | [payload] validate_post thread has finished
[2025-11-21 12:02:17] 2025-11-21 17:01:48,398 | INFO     | [job] control thread has finished
[2025-11-21 12:02:17] 2025-11-21 17:01:48,521 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 12:02:17] 2025-11-21 17:01:48,875 | INFO     | [data] control thread has finished
[2025-11-21 12:02:17] 2025-11-21 17:01:48,921 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 12:02:17] 2025-11-21 17:01:49,149 | INFO     | [payload] control thread has finished
[2025-11-21 12:02:17] 2025-11-21 17:01:49,288 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 12:02:17] 2025-11-21 17:01:49,336 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 12:02:17] 2025-11-21 17:01:49,432 | INFO     | [data] copytool_in thread has finished
[2025-11-21 12:02:17] 2025-11-21 17:01:49,459 | INFO     | [payload] failed_post thread has finished
[2025-11-21 12:02:17] 2025-11-21 17:01:49,467 | INFO     | [job] validate thread has finished
[2025-11-21 12:02:17] 2025-11-21 17:01:49,508 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 12:02:17] 2025-11-21 17:01:50,528 | INFO     | [data] copytool_out thread has finished
[2025-11-21 12:02:17] 2025-11-21 17:01:51,187 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 12:02:17] 2025-11-21 17:01:56,538 | INFO     | [monitor] cgroup control has ended
[2025-11-21 12:02:17] 2025-11-21 17:01:58,466 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140698063251264)>', '<ExcThread(monitor, started 140697306896128)>']
[2025-11-21 12:02:17] 2025-11-21 17:02:03,492 | INFO     | all workflow threads have been joined
[2025-11-21 12:02:17] 2025-11-21 17:02:03,492 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 12:02:17] 2025-11-21 17:02:03,492 | INFO     | traces error code: 0
[2025-11-21 12:02:17] 2025-11-21 17:02:03,492 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 12:02:17] 2025-11-21 17:02:17,072 | INFO     | PID=3431338 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 12:02:17] 2025-11-21 17:02:17,073 | INFO     | .. there are 10 such processes running
[2025-11-21 12:02:17] 2025-11-21 17:02:17,073 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 12:02:17] 2025-11-21 17:02:17,073 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 12:02:17] 2025-11-21 17:02:17,073 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 12:02:17] 2025-11-21 17:02:17,073 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 12:02:17] 2025-11-21 17:02:17,073 | CRITICAL | thread 'MainThread' is not alive
[2025-11-21 12:02:17] 2025-11-21 17:02:17,074 | INFO     | [monitor] control thread has ended
[2025-11-21 12:02:17] 2025-11-21 17:02:17,259 [wrapper] ==== pilot stdout END ====
[2025-11-21 12:02:17] 2025-11-21 17:02:17,261 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 12:02:17] 2025-11-21 17:02:17,283 [wrapper] pilotpid: 3431338
[2025-11-21 12:02:17] 2025-11-21 17:02:17,301 [wrapper] Pilot exit status: 0
[2025-11-21 12:02:17] 2025-11-21 17:02:17,345 [wrapper] pandaids: 6893876899
[2025-11-21 12:02:17] 2025-11-21 17:02:17,409 [wrapper] cleanup supervisor_pilot  238013 3431339
[2025-11-21 12:02:17] 2025-11-21 17:02:17,413 [wrapper] Test setup, not cleaning
[2025-11-21 12:02:17] 2025-11-21 17:02:17,417 [wrapper] apfmon messages muted
[2025-11-21 12:02:17] 2025-11-21 17:02:17,420 [wrapper] ==== wrapper stdout END ====
[2025-11-21 12:02:17] 2025-11-21 17:02:17,422 [wrapper] ==== wrapper stderr END ====
[2025-11-21 12:02:17]  *** Error codes and diagnostics ***
[2025-11-21 12:02:17]     "exeErrorCode": 0,
[2025-11-21 12:02:17]     "exeErrorDiag": "",
[2025-11-21 12:02:17]     "pilotErrorCode": 0,
[2025-11-21 12:02:17]     "pilotErrorDiag": "",
[2025-11-21 12:02:17]  *** Listing of results directory ***
[2025-11-21 12:02:17] total 1303936
[2025-11-21 12:02:17] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 12:52 pilot3.tar.gz
[2025-11-21 12:02:17] -rwx------. 1 boincer umatlas     36292 Nov 20 12:58 runpilot2-wrapper.sh
[2025-11-21 12:02:17] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 12:58 queuedata.json
[2025-11-21 12:02:17] -rw-r--r--. 1 boincer umatlas       100 Nov 21 00:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 12:02:17] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 00:29 run_atlas
[2025-11-21 12:02:17] -rw-r--r--. 1 boincer umatlas       105 Nov 21 00:29 job.xml
[2025-11-21 12:02:17] -rw-r--r--. 2 boincer umatlas 409488932 Nov 21 00:29 EVNT.47493127._000782.pool.root.1
[2025-11-21 12:02:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:29 start_atlas.sh
[2025-11-21 12:02:17] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 00:29 shared
[2025-11-21 12:02:17] -rw-r--r--. 2 boincer umatlas    590097 Nov 21 00:29 input.tar.gz
[2025-11-21 12:02:17] -rw-r--r--. 1 boincer umatlas         0 Nov 21 00:29 boinc_lockfile
[2025-11-21 12:02:17] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 00:29 pandaJob.out
[2025-11-21 12:02:17] -rw-------. 1 boincer umatlas        57 Nov 21 00:29 setup.sh.local
[2025-11-21 12:02:17] -rw-------. 1 boincer umatlas    989817 Nov 21 00:29 agis_schedconf.cvmfs.json
[2025-11-21 12:02:17] drwx------. 5 boincer umatlas      4096 Nov 21 00:29 pilot3
[2025-11-21 12:02:17] -rw-r--r--. 1 boincer umatlas       532 Nov 21 11:52 boinc_task_state.xml
[2025-11-21 12:02:17] -rw-r--r--. 1 boincer umatlas      6662 Nov 21 11:58 init_data.xml
[2025-11-21 12:02:17] -rw-------. 1 boincer umatlas 906399549 Nov 21 12:00 HITS.47523449._007817.pool.root.1
[2025-11-21 12:02:17] -rw-------. 1 boincer umatlas        95 Nov 21 12:01 pilot_heartbeat.json
[2025-11-21 12:02:17] -rw-------. 1 boincer umatlas      1054 Nov 21 12:01 memory_monitor_summary.json
[2025-11-21 12:02:17] -rw-------. 1 boincer umatlas   1526164 Nov 21 12:01 agis_ddmendpoints.agis.ALL.json
[2025-11-21 12:02:17] -rw-------. 1 boincer umatlas   1946599 Nov 21 12:01 log.47523449._007817.job.log.tgz.1
[2025-11-21 12:02:17] -rw-------. 1 boincer umatlas      8623 Nov 21 12:01 heartbeat.json
[2025-11-21 12:02:17] -rw-r--r--. 1 boincer umatlas        29 Nov 21 12:02 wrapper_checkpoint.txt
[2025-11-21 12:02:17] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 12:02 boinc_mmap_file
[2025-11-21 12:02:17] -rw-------. 1 boincer umatlas       893 Nov 21 12:02 pilotlog.txt
[2025-11-21 12:02:17] -rw-------. 1 boincer umatlas   5762855 Nov 21 12:02 log.47523449._007817.job.log.1
[2025-11-21 12:02:17] -rw-------. 1 boincer umatlas       353 Nov 21 12:02 output.list
[2025-11-21 12:02:17] -rw-r--r--. 1 boincer umatlas       620 Nov 21 12:02 runtime_log
[2025-11-21 12:02:17] -rw-------. 1 boincer umatlas   7731200 Nov 21 12:02 result.tar.gz
[2025-11-21 12:02:17] -rw-------. 1 boincer umatlas       660 Nov 21 12:02 XkKMDme6Ng8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9vGKDmHkThjn.diag
[2025-11-21 12:02:17] -rw-r--r--. 1 boincer umatlas      9343 Nov 21 12:02 runtime_log.err
[2025-11-21 12:02:17] -rw-r--r--. 1 boincer umatlas     21286 Nov 21 12:02 stderr.txt
[2025-11-21 12:02:17] HITS file was successfully produced:
[2025-11-21 12:02:17] -rw-------. 1 boincer umatlas 906399549 Nov 21 12:00 shared/HITS.pool.root.1
[2025-11-21 12:02:17]  *** Contents of shared directory: ***
[2025-11-21 12:02:17] total 1293204
[2025-11-21 12:02:17] -rw-r--r--. 2 boincer umatlas 409488932 Nov 21 00:29 ATLAS.root_0
[2025-11-21 12:02:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:29 start_atlas.sh
[2025-11-21 12:02:17] -rw-r--r--. 2 boincer umatlas    590097 Nov 21 00:29 input.tar.gz
[2025-11-21 12:02:17] -rw-------. 1 boincer umatlas 906399549 Nov 21 12:00 HITS.pool.root.1
[2025-11-21 12:02:17] -rw-------. 1 boincer umatlas   7731200 Nov 21 12:02 result.tar.gz
12:02:39 (3427656): run_atlas exited; CPU time 286561.160028
12:02:39 (3427656): called boinc_finish(0)

</stderr_txt>
]]>

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