Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:08 (1041408): wrapper (7.7.26015): starting
00:05:08 (1041408): wrapper: running run_atlas (--nthreads 9)
[2025-11-22 00:05:09] Arguments: --nthreads 9
[2025-11-22 00:05:09] Threads: 9
[2025-11-22 00:05:09] Checking for CVMFS
[2025-11-22 00:05:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:05:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:05:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:05:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:05:11] 2.13.3.0 9863 23712 337808 153159 3 900 28110649 32935936 19710 16776704 0 141470529 99.799 74423622 33571 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 00:05:11] CVMFS is ok
[2025-11-22 00:05:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:05:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:05:11] Further information can be found at the LHC@home message board.
[2025-11-22 00:05:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:05:11] Checking for apptainer binary...
[2025-11-22 00:05:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:05:11] Running /usr/bin/apptainer --version
[2025-11-22 00:05:11] apptainer version 1.4.4-1.el9
[2025-11-22 00:05:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:05:33] c-5-3.aglt2.org
[2025-11-22 00:05:33] apptainer works
[2025-11-22 00:05:33] Set ATHENA_PROC_NUMBER=9
[2025-11-22 00:05:33] Set ATHENA_CORE_NUMBER=9
[2025-11-22 00:05:33] Starting ATLAS job with PandaID=6893876843
[2025-11-22 00:05:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 05:28:21]  *** The last 200 lines of the pilot log: ***
[2025-11-23 05:28:21] 2025-11-23 10:27:22,226 | INFO     | time since job start (105629s) is within the limit (172800.0s)
[2025-11-23 05:28:21] 2025-11-23 10:27:22,447 | INFO     | monitor loop #5765: job 0:6893876843 is in state 'finished'
[2025-11-23 05:28:21] 2025-11-23 10:27:22,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 05:28:21] 2025-11-23 10:27:24,233 | INFO     | time since job start (105631s) is within the limit (172800.0s)
[2025-11-23 05:28:21] 2025-11-23 10:27:25,042 | INFO     | monitor loop #5766: job 0:6893876843 is in state 'finished'
[2025-11-23 05:28:21] 2025-11-23 10:27:25,042 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 05:28:21] 2025-11-23 10:27:26,246 | INFO     | time since job start (105633s) is within the limit (172800.0s)
[2025-11-23 05:28:21] 2025-11-23 10:27:27,622 | INFO     | monitor loop #5767: job 0:6893876843 is in state 'finished'
[2025-11-23 05:28:21] 2025-11-23 10:27:27,622 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 05:28:21] 2025-11-23 10:27:28,273 | INFO     | time since job start (105635s) is within the limit (172800.0s)
[2025-11-23 05:28:21] 2025-11-23 10:27:30,127 | INFO     | monitor loop #5768: job 0:6893876843 is in state 'finished'
[2025-11-23 05:28:21] 2025-11-23 10:27:30,127 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 05:28:21] 2025-11-23 10:27:30,290 | INFO     | time since job start (105637s) is within the limit (172800.0s)
[2025-11-23 05:28:21] 2025-11-23 10:27:32,297 | INFO     | time since job start (105639s) is within the limit (172800.0s)
[2025-11-23 05:28:21] 2025-11-23 10:27:32,632 | INFO     | monitor loop #5769: job 0:6893876843 is in state 'finished'
[2025-11-23 05:28:21] 2025-11-23 10:27:32,632 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 05:28:21] 2025-11-23 10:27:32,979 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 05:28:21] 2025-11-23 10:27:32,998 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0351499999992
[2025-11-23 05:28:21] 2025-11-23 10:27:33,014 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893876843/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 05:28:21] 2025-11-23 10:27:33,015 | INFO     | extracted standard info from prmon json
[2025-11-23 05:28:21] 2025-11-23 10:27:33,015 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 05:28:21] 2025-11-23 10:27:33,015 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 05:28:21] 2025-11-23 10:27:33,092 | INFO     | fitting pss+swap vs Time
[2025-11-23 05:28:21] 2025-11-23 10:27:33,095 | INFO     | sum of square deviations: 1602833188762.9307
[2025-11-23 05:28:21] 2025-11-23 10:27:33,293 | INFO     | sum of deviations: 6210171118809.433
[2025-11-23 05:28:21] 2025-11-23 10:27:33,296 | INFO     | mean x: 1763840838.7958357
[2025-11-23 05:28:21] 2025-11-23 10:27:33,297 | INFO     | mean y: 3109940.6443030653
[2025-11-23 05:28:21] 2025-11-23 10:27:33,297 | INFO     | intersect: -6830884708.368815
[2025-11-23 05:28:21] 2025-11-23 10:27:33,299 | INFO     | chi2: 25.96369002367698
[2025-11-23 05:28:21] 2025-11-23 10:27:33,309 | INFO     | sum of square deviations: 1588970725800.678
[2025-11-23 05:28:21] 2025-11-23 10:27:34,014 | INFO     | sum of deviations: 6859495057825.611
[2025-11-23 05:28:21] 2025-11-23 10:27:34,014 | INFO     | mean x: 1763840686.3068445
[2025-11-23 05:28:21] 2025-11-23 10:27:34,014 | INFO     | mean y: 3117082.626450116
[2025-11-23 05:28:21] 2025-11-23 10:27:34,014 | INFO     | intersect: -7611281517.710791
[2025-11-23 05:28:21] 2025-11-23 10:27:34,066 | INFO     | chi2: 22.450964592947997
[2025-11-23 05:28:21] 2025-11-23 10:27:34,066 | INFO     | current chi2=22.450964592947997 (change=13.529376708494183 %)
[2025-11-23 05:28:21] 2025-11-23 10:27:34,066 | INFO     | right removable region: 1723
[2025-11-23 05:28:21] 2025-11-23 10:27:34,069 | INFO     | sum of square deviations: 1588966722370.681
[2025-11-23 05:28:21] 2025-11-23 10:27:34,214 | INFO     | sum of deviations: 5497684652996.167
[2025-11-23 05:28:21] 2025-11-23 10:27:34,214 | INFO     | mean x: 1763840991.3068445
[2025-11-23 05:28:21] 2025-11-23 10:27:34,215 | INFO     | mean y: 3117775.7047563805
[2025-11-23 05:28:21] 2025-11-23 10:27:34,215 | INFO     | intersect: -6099616417.347159
[2025-11-23 05:28:21] 2025-11-23 10:27:34,217 | INFO     | chi2: 22.279623452240585
[2025-11-23 05:28:21] 2025-11-23 10:27:34,220 | INFO     | current chi2=22.279623452240585 (change=14.189302707268478 %)
[2025-11-23 05:28:21] 2025-11-23 10:27:34,220 | INFO     | left removable region: 10
[2025-11-23 05:28:21] 2025-11-23 10:27:34,223 | INFO     | sum of square deviations: 1558747233150.2415
[2025-11-23 05:28:21] 2025-11-23 10:27:34,319 | INFO     | time since job start (105641s) is within the limit (172800.0s)
[2025-11-23 05:28:21] 2025-11-23 10:27:34,365 | INFO     | sum of deviations: 5634873586449.306
[2025-11-23 05:28:21] 2025-11-23 10:27:34,365 | INFO     | mean x: 1763840960.8312902
[2025-11-23 05:28:21] 2025-11-23 10:27:34,366 | INFO     | mean y: 3133436.852305896
[2025-11-23 05:28:21] 2025-11-23 10:27:34,366 | INFO     | intersect: -6373154282.869099
[2025-11-23 05:28:21] 2025-11-23 10:27:34,401 | INFO     | chi2: 15.235711491696133
[2025-11-23 05:28:21] 2025-11-23 10:27:34,402 | INFO     | current memory leak: 3.62 B/s (using 1713 data points, chi2=15.24)
[2025-11-23 05:28:21] 2025-11-23 10:27:34,428 | INFO     | could have reported an average CPU frequency of 2600 MHz (61 samples)
[2025-11-23 05:28:21] 2025-11-23 10:27:34,428 | INFO     | ..............................
[2025-11-23 05:28:21] 2025-11-23 10:27:34,428 | INFO     | . Timing measurements:
[2025-11-23 05:28:21] 2025-11-23 10:27:34,428 | INFO     | . get job = 0 s
[2025-11-23 05:28:21] 2025-11-23 10:27:34,428 | INFO     | . initial setup = 6 s
[2025-11-23 05:28:21] 2025-11-23 10:27:34,429 | INFO     | . payload setup = 25 s
[2025-11-23 05:28:21] 2025-11-23 10:27:34,429 | INFO     | . stage-in = 0 s
[2025-11-23 05:28:21] 2025-11-23 10:27:34,429 | INFO     | . payload execution = 105481 s
[2025-11-23 05:28:21] 2025-11-23 10:27:34,429 | INFO     | . stage-out = 17 s
[2025-11-23 05:28:21] 2025-11-23 10:27:34,429 | INFO     | . log creation = 6 s
[2025-11-23 05:28:21] 2025-11-23 10:27:34,429 | INFO     | ..............................
[2025-11-23 05:28:21] 2025-11-23 10:27:35,609 | INFO     | 
[2025-11-23 05:28:21] 2025-11-23 10:27:35,609 | INFO     | job summary report
[2025-11-23 05:28:21] 2025-11-23 10:27:35,609 | INFO     | --------------------------------------------------
[2025-11-23 05:28:21] 2025-11-23 10:27:35,609 | INFO     | PanDA job id: 6893876843
[2025-11-23 05:28:21] 2025-11-23 10:27:35,609 | INFO     | task id: 47523449
[2025-11-23 05:28:21] 2025-11-23 10:27:35,610 | INFO     | errors: (none)
[2025-11-23 05:28:21] 2025-11-23 10:27:35,610 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 05:28:21] 2025-11-23 10:27:35,610 | INFO     | pilot state: finished 
[2025-11-23 05:28:21] 2025-11-23 10:27:35,610 | INFO     | transexitcode: 0
[2025-11-23 05:28:21] 2025-11-23 10:27:35,610 | INFO     | exeerrorcode: 0
[2025-11-23 05:28:21] 2025-11-23 10:27:35,610 | INFO     | exeerrordiag: 
[2025-11-23 05:28:21] 2025-11-23 10:27:35,610 | INFO     | exitcode: 0
[2025-11-23 05:28:21] 2025-11-23 10:27:35,610 | INFO     | exitmsg: OK
[2025-11-23 05:28:21] 2025-11-23 10:27:35,610 | INFO     | cpuconsumptiontime: 297472 s
[2025-11-23 05:28:21] 2025-11-23 10:27:35,611 | INFO     | nevents: 1000
[2025-11-23 05:28:21] 2025-11-23 10:27:35,611 | INFO     | neventsw: 0
[2025-11-23 05:28:21] 2025-11-23 10:27:35,611 | INFO     | pid: 1066719
[2025-11-23 05:28:21] 2025-11-23 10:27:35,611 | INFO     | pgrp: 1066719
[2025-11-23 05:28:21] 2025-11-23 10:27:35,611 | INFO     | corecount: 9
[2025-11-23 05:28:21] 2025-11-23 10:27:35,611 | INFO     | event service: False
[2025-11-23 05:28:21] 2025-11-23 10:27:35,611 | INFO     | sizes: {0: 2297927, 1: 2298612, 2: 2298811, 3: 2298811, 14: 2298839, 25: 2298867, 36: 2298867, 37: 2299285, 48: 2299313, 105512: 2372849, 105513: 2372848, 105532: 
[2025-11-23 05:28:21] 2025-11-23 10:27:35,628 | INFO     | --------------------------------------------------
[2025-11-23 05:28:21] 2025-11-23 10:27:35,629 | INFO     | 
[2025-11-23 05:28:21] 2025-11-23 10:27:35,629 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 05:28:21] 2025-11-23 10:27:35,833 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,834 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,834 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,834 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,834 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,834 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,834 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,835 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,835 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,835 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,835 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,835 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,835 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,835 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,835 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,836 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,836 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,836 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 05:28:21] 2025-11-23 10:27:35,836 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,856 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 05:28:21] 2025-11-23 10:27:35,857 | INFO     | job 6893876843 has completed (purged errors)
[2025-11-23 05:28:21] 2025-11-23 10:27:35,857 | INFO     | overall cleanup function is called
[2025-11-23 05:28:21] 2025-11-23 10:27:37,045 | INFO     | --- collectZombieJob: --- 10, [1066719]
[2025-11-23 05:28:21] 2025-11-23 10:27:37,045 | INFO     | zombie collector waiting for pid 1066719
[2025-11-23 05:28:21] 2025-11-23 10:27:37,045 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 05:28:21] 2025-11-23 10:27:37,046 | INFO     | collected zombie processes
[2025-11-23 05:28:21] 2025-11-23 10:27:37,046 | INFO     | will attempt to kill all subprocesses of pid=1066719
[2025-11-23 05:28:21] 2025-11-23 10:27:41,019 | INFO     | process IDs to be killed: [1066719] (in reverse order)
[2025-11-23 05:28:21] 2025-11-23 10:27:41,193 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 05:28:21] 2025-11-23 10:27:41,194 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 05:28:21] 2025-11-23 10:27:41,220 | INFO     | did not find any defunct processes belonging to 1066719
[2025-11-23 05:28:21] 2025-11-23 10:27:41,246 | INFO     | did not find any defunct processes belonging to 1066719
[2025-11-23 05:28:21] 2025-11-23 10:27:41,257 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 05:28:21] 2025-11-23 10:27:41,257 | INFO     | ready for new job
[2025-11-23 05:28:21] 2025-11-23 10:27:41,257 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 05:28:21] 2025-11-23 10:27:41,268 | INFO     | ***************************************
[2025-11-23 05:28:21] 2025-11-23 10:27:41,268 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 05:28:21] 2025-11-23 10:27:41,268 | INFO     | ***************************************
[2025-11-23 05:28:21] 2025-11-23 10:27:41,269 | INFO     | 
[2025-11-23 05:28:21] 2025-11-23 10:27:41,275 | INFO     | architecture information:
[2025-11-23 05:28:21] 2025-11-23 10:27:41,276 | INFO     | executing command: cat /etc/os-release
[2025-11-23 05:28:21] 2025-11-23 10:27:41,363 | INFO     | cat /etc/os-release:
[2025-11-23 05:28:21] NAME="CentOS Linux"
[2025-11-23 05:28:21] VERSION="7 (Core)"
[2025-11-23 05:28:21] ID="centos"
[2025-11-23 05:28:21] ID_LIKE="rhel fedora"
[2025-11-23 05:28:21] VERSION_ID="7"
[2025-11-23 05:28:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 05:28:21] ANSI_COLOR="0;31"
[2025-11-23 05:28:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 05:28:21] HOME_URL="https://www.centos.org/"
[2025-11-23 05:28:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 05:28:21] 
[2025-11-23 05:28:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 05:28:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 05:28:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 05:28:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 05:28:21] 
[2025-11-23 05:28:21] 2025-11-23 10:27:41,364 | INFO     | ***************************************
[2025-11-23 05:28:21] 2025-11-23 10:27:41,866 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 05:28:21] 2025-11-23 10:27:42,034 | INFO     | sufficient remaining disk space (71464648704 B)
[2025-11-23 05:28:21] 2025-11-23 10:27:42,034 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 05:28:21] 2025-11-23 10:27:42,034 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 05:28:21] 2025-11-23 10:27:42,034 | INFO     | update_server=False
[2025-11-23 05:28:21] 2025-11-23 10:27:42,034 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 05:28:21] 2025-11-23 10:27:42,035 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 05:28:21] 2025-11-23 10:27:42,035 | INFO     | aborting loop
[2025-11-23 05:28:21] 2025-11-23 10:27:42,299 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 05:28:21] 2025-11-23 10:27:42,642 | INFO     | all job control threads have been joined
[2025-11-23 05:28:21] 2025-11-23 10:27:42,959 | INFO     | all payload control threads have been joined
[2025-11-23 05:28:21] 2025-11-23 10:27:43,041 | INFO     | [job] retrieve thread has finished
[2025-11-23 05:28:21] 2025-11-23 10:27:43,042 | INFO     | [job] job monitor thread has finished
[2025-11-23 05:28:21] 2025-11-23 10:27:43,084 | INFO     | all data control threads have been joined
[2025-11-23 05:28:21] 2025-11-23 10:27:43,115 | INFO     | [job] validate thread has finished
[2025-11-23 05:28:21] 2025-11-23 10:27:43,607 | INFO     | [payload] validate_post thread has finished
[2025-11-23 05:28:21] 2025-11-23 10:27:43,648 | INFO     | [job] control thread has finished
[2025-11-23 05:28:21] 2025-11-23 10:27:43,680 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 05:28:21] 2025-11-23 10:27:43,808 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 05:28:21] 2025-11-23 10:27:43,818 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 05:28:21] 2025-11-23 10:27:43,965 | INFO     | [payload] control thread has finished
[2025-11-23 05:28:21] 2025-11-23 10:27:44,090 | INFO     | [data] control thread has finished
[2025-11-23 05:28:21] 2025-11-23 10:27:44,172 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 05:28:21] 2025-11-23 10:27:44,184 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 05:28:21] 2025-11-23 10:27:44,254 | INFO     | [data] copytool_in thread has finished
[2025-11-23 05:28:21] 2025-11-23 10:27:44,325 | INFO     | [data] copytool_out thread has finished
[2025-11-23 05:28:21] 2025-11-23 10:27:44,383 | INFO     | [payload] failed_post thread has finished
[2025-11-23 05:28:21] 2025-11-23 10:27:44,779 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 05:28:21] 2025-11-23 10:27:45,785 | INFO     | [job] queue monitor thread has finished
[2025-11-23 05:28:21] 2025-11-23 10:27:47,730 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 05:28:21] 2025-11-23 10:28:10,154 | INFO     | [monitor] cgroup control has ended
[2025-11-23 05:28:21] 2025-11-23 10:28:11,726 | INFO     | PID=1047715 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 05:28:21] 2025-11-23 10:28:11,726 | INFO     | .. there are 37 such processes running
[2025-11-23 05:28:21] 2025-11-23 10:28:11,727 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 05:28:21] 2025-11-23 10:28:11,728 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 05:28:21] 2025-11-23 10:28:11,728 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 05:28:21] 2025-11-23 10:28:12,007 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140447720900416)>', '<ExcThread(monitor, started 140447225730816)>']
[2025-11-23 05:28:21] 2025-11-23 10:28:12,734 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 05:28:21] 2025-11-23 10:28:12,734 | INFO     | [monitor] control thread has ended
[2025-11-23 05:28:21] 2025-11-23 10:28:17,042 | INFO     | all workflow threads have been joined
[2025-11-23 05:28:21] 2025-11-23 10:28:17,042 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 05:28:21] 2025-11-23 10:28:17,043 | INFO     | traces error code: 0
[2025-11-23 05:28:21] 2025-11-23 10:28:17,043 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 05:28:21] 2025-11-23 10:28:19,849 [wrapper] ==== pilot stdout END ====
[2025-11-23 05:28:21] 2025-11-23 10:28:19,868 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 05:28:21] 2025-11-23 10:28:19,911 [wrapper] pilotpid: 1047715
[2025-11-23 05:28:21] 2025-11-23 10:28:19,982 [wrapper] Pilot exit status: 0
[2025-11-23 05:28:21] 2025-11-23 10:28:20,084 [wrapper] pandaids: 6893876843
[2025-11-23 05:28:21] 2025-11-23 10:28:20,303 [wrapper] cleanup supervisor_pilot 2528570 1047716
[2025-11-23 05:28:21] 2025-11-23 10:28:20,306 [wrapper] Test setup, not cleaning
[2025-11-23 05:28:21] 2025-11-23 10:28:20,309 [wrapper] apfmon messages muted
[2025-11-23 05:28:21] 2025-11-23 10:28:20,312 [wrapper] ==== wrapper stdout END ====
[2025-11-23 05:28:21] 2025-11-23 10:28:20,315 [wrapper] ==== wrapper stderr END ====
[2025-11-23 05:28:21]  *** Error codes and diagnostics ***
[2025-11-23 05:28:21]     "exeErrorCode": 0,
[2025-11-23 05:28:21]     "exeErrorDiag": "",
[2025-11-23 05:28:21]     "pilotErrorCode": 0,
[2025-11-23 05:28:21]     "pilotErrorDiag": "",
[2025-11-23 05:28:21]  *** Listing of results directory ***
[2025-11-23 05:28:21] total 1331160
[2025-11-23 05:28:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 12:52 pilot3.tar.gz
[2025-11-23 05:28:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 12:55 queuedata.json
[2025-11-23 05:28:21] -rwx------. 1 boincer umatlas     36292 Nov 20 12:55 runpilot2-wrapper.sh
[2025-11-23 05:28:21] -rw-r--r--. 1 boincer umatlas       100 Nov 22 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 05:28:21] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 00:05 run_atlas
[2025-11-23 05:28:21] -rw-r--r--. 1 boincer umatlas       105 Nov 22 00:05 job.xml
[2025-11-23 05:28:21] -rw-r--r--. 2 boincer umatlas 408974010 Nov 22 00:05 EVNT.47493127._000778.pool.root.1
[2025-11-23 05:28:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:05 start_atlas.sh
[2025-11-23 05:28:21] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 00:05 shared
[2025-11-23 05:28:21] -rw-r--r--. 2 boincer umatlas    590104 Nov 22 00:05 input.tar.gz
[2025-11-23 05:28:21] -rw-r--r--. 1 boincer umatlas         0 Nov 22 00:05 boinc_lockfile
[2025-11-23 05:28:21] -rw-r--r--. 1 boincer umatlas      2784 Nov 22 00:05 pandaJob.out
[2025-11-23 05:28:21] -rw-------. 1 boincer umatlas        57 Nov 22 00:05 setup.sh.local
[2025-11-23 05:28:21] -rw-------. 1 boincer umatlas    989752 Nov 22 00:06 agis_schedconf.cvmfs.json
[2025-11-23 05:28:21] drwx------. 5 boincer umatlas      4096 Nov 22 00:06 pilot3
[2025-11-23 05:28:21] -rw-r--r--. 1 boincer umatlas       533 Nov 23 04:51 boinc_task_state.xml
[2025-11-23 05:28:21] -rw-------. 1 boincer umatlas 919482476 Nov 23 05:25 HITS.47523449._007774.pool.root.1
[2025-11-23 05:28:21] -rw-------. 1 boincer umatlas      1069 Nov 23 05:26 memory_monitor_summary.json
[2025-11-23 05:28:21] -rw-------. 1 boincer umatlas   1526164 Nov 23 05:26 agis_ddmendpoints.agis.ALL.json
[2025-11-23 05:28:21] -rw-------. 1 boincer umatlas   2744311 Nov 23 05:26 log.47523449._007774.job.log.tgz.1
[2025-11-23 05:28:21] -rw-r--r--. 1 boincer umatlas      6706 Nov 23 05:27 init_data.xml
[2025-11-23 05:28:21] -rw-------. 1 boincer umatlas      8650 Nov 23 05:27 heartbeat.json
[2025-11-23 05:28:21] -rw-------. 1 boincer umatlas        95 Nov 23 05:28 pilot_heartbeat.json
[2025-11-23 05:28:21] -rw-------. 1 boincer umatlas      4824 Nov 23 05:28 pilotlog.txt
[2025-11-23 05:28:21] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 05:28 boinc_mmap_file
[2025-11-23 05:28:21] -rw-r--r--. 1 boincer umatlas        29 Nov 23 05:28 wrapper_checkpoint.txt
[2025-11-23 05:28:21] -rw-------. 1 boincer umatlas  12617079 Nov 23 05:28 log.47523449._007774.job.log.1
[2025-11-23 05:28:21] -rw-------. 1 boincer umatlas       353 Nov 23 05:28 output.list
[2025-11-23 05:28:21] -rw-r--r--. 1 boincer umatlas       620 Nov 23 05:28 runtime_log
[2025-11-23 05:28:21] -rw-------. 1 boincer umatlas  15380480 Nov 23 05:28 result.tar.gz
[2025-11-23 05:28:21] -rw-------. 1 boincer umatlas       664 Nov 23 05:28 V6nLDml3Ng8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkNIKDmAyg2Im.diag
[2025-11-23 05:28:21] -rw-r--r--. 1 boincer umatlas      9329 Nov 23 05:28 runtime_log.err
[2025-11-23 05:28:21] -rw-r--r--. 1 boincer umatlas     21825 Nov 23 05:28 stderr.txt
[2025-11-23 05:28:21] HITS file was successfully produced:
[2025-11-23 05:28:21] -rw-------. 1 boincer umatlas 919482476 Nov 23 05:25 shared/HITS.pool.root.1
[2025-11-23 05:28:21]  *** Contents of shared directory: ***
[2025-11-23 05:28:21] total 1312952
[2025-11-23 05:28:21] -rw-r--r--. 2 boincer umatlas 408974010 Nov 22 00:05 ATLAS.root_0
[2025-11-23 05:28:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:05 start_atlas.sh
[2025-11-23 05:28:21] -rw-r--r--. 2 boincer umatlas    590104 Nov 22 00:05 input.tar.gz
[2025-11-23 05:28:21] -rw-------. 1 boincer umatlas 919482476 Nov 23 05:25 HITS.pool.root.1
[2025-11-23 05:28:21] -rw-------. 1 boincer umatlas  15380480 Nov 23 05:28 result.tar.gz
05:28:23 (1041408): run_atlas exited; CPU time 299947.377751
05:28:23 (1041408): called boinc_finish(0)

</stderr_txt>
]]>

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