Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:46:34 (3977070): wrapper (7.7.26015): starting
11:46:34 (3977070): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 11:46:34] Arguments: --nthreads 8
[2025-11-21 11:46:34] Threads: 8
[2025-11-21 11:46:34] Checking for CVMFS
[2025-11-21 11:46:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 11:46:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 11:46:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 11:46:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 11:46:37] 2.13.3.0 11830 22974 339936 153135 0 510 21042645 32935867 31145 16776704 0 119452124 99.569 125192187 33096 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 11:46:37] CVMFS is ok
[2025-11-21 11:46:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 11:46:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 11:46:37] Further information can be found at the LHC@home message board.
[2025-11-21 11:46:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 11:46:37] Checking for apptainer binary...
[2025-11-21 11:46:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 11:46:37] Running /usr/bin/apptainer --version
[2025-11-21 11:46:37] apptainer version 1.4.4-1.el9
[2025-11-21 11:46:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 11:46:37] c6-8-25-1.aglt2.org
[2025-11-21 11:46:37] apptainer works
[2025-11-21 11:46:38] Set ATHENA_PROC_NUMBER=8
[2025-11-21 11:46:38] Set ATHENA_CORE_NUMBER=8
[2025-11-21 11:46:38] Starting ATLAS job with PandaID=6893859502
[2025-11-21 11:46:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 14:23:09]  *** The last 200 lines of the pilot log: ***
[2025-11-22 14:23:09] 2025-11-22 19:22:22,001 | INFO     | time since job start (95682s) is within the limit (172800.0s)
[2025-11-22 14:23:09] 2025-11-22 19:22:22,133 | INFO     | monitor loop #4544: job 0:6893859502 is in state 'finished'
[2025-11-22 14:23:09] 2025-11-22 19:22:22,134 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:23:09] 2025-11-22 19:22:24,008 | INFO     | time since job start (95684s) is within the limit (172800.0s)
[2025-11-22 14:23:09] 2025-11-22 19:22:24,640 | INFO     | monitor loop #4545: job 0:6893859502 is in state 'finished'
[2025-11-22 14:23:09] 2025-11-22 19:22:24,641 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:23:09] 2025-11-22 19:22:26,021 | INFO     | time since job start (95686s) is within the limit (172800.0s)
[2025-11-22 14:23:09] 2025-11-22 19:22:27,167 | INFO     | monitor loop #4546: job 0:6893859502 is in state 'finished'
[2025-11-22 14:23:09] 2025-11-22 19:22:27,167 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:23:09] 2025-11-22 19:22:29,706 | INFO     | monitor loop #4547: job 0:6893859502 is in state 'finished'
[2025-11-22 14:23:09] 2025-11-22 19:22:29,706 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:23:09] 2025-11-22 19:22:29,937 | INFO     | PID=3995160 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 14:23:09] 2025-11-22 19:22:29,937 | INFO     | .. there are 59 such processes running
[2025-11-22 14:23:09] 2025-11-22 19:22:30,938 | INFO     | time since job start (95690s) is within the limit (172800.0s)
[2025-11-22 14:23:09] 2025-11-22 19:22:32,218 | INFO     | monitor loop #4548: job 0:6893859502 is in state 'finished'
[2025-11-22 14:23:09] 2025-11-22 19:22:32,219 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:23:09] 2025-11-22 19:22:32,919 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 14:23:09] 2025-11-22 19:22:32,933 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2557.38803125
[2025-11-22 14:23:09] 2025-11-22 19:22:32,953 | INFO     | time since job start (95692s) is within the limit (172800.0s)
[2025-11-22 14:23:09] 2025-11-22 19:22:32,972 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893859502/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 14:23:09] 2025-11-22 19:22:32,973 | INFO     | extracted standard info from prmon json
[2025-11-22 14:23:09] 2025-11-22 19:22:32,973 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 14:23:09] 2025-11-22 19:22:32,973 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 14:23:09] 2025-11-22 19:22:33,030 | INFO     | fitting pss+swap vs Time
[2025-11-22 14:23:09] 2025-11-22 19:22:33,033 | INFO     | sum of square deviations: 1188466215896.8726
[2025-11-22 14:23:09] 2025-11-22 19:22:33,137 | INFO     | sum of deviations: 6084746687463.565
[2025-11-22 14:23:09] 2025-11-22 19:22:33,137 | INFO     | mean x: 1763791579.026837
[2025-11-22 14:23:09] 2025-11-22 19:22:33,138 | INFO     | mean y: 2896982.843450479
[2025-11-22 14:23:09] 2025-11-22 19:22:33,138 | INFO     | intersect: -9027418582.130886
[2025-11-22 14:23:09] 2025-11-22 19:22:33,140 | INFO     | chi2: 17.331138028506633
[2025-11-22 14:23:09] 2025-11-22 19:22:33,146 | INFO     | sum of square deviations: 1177112061675.9146
[2025-11-22 14:23:09] 2025-11-22 19:22:33,247 | INFO     | sum of deviations: 6632201580957.741
[2025-11-22 14:23:09] 2025-11-22 19:22:33,252 | INFO     | mean x: 1763791426.5365384
[2025-11-22 14:23:09] 2025-11-22 19:22:33,252 | INFO     | mean y: 2904333.8115384616
[2025-11-22 14:23:09] 2025-11-22 19:22:33,252 | INFO     | intersect: -9934824339.956833
[2025-11-22 14:23:09] 2025-11-22 19:22:33,254 | INFO     | chi2: 13.868825711724813
[2025-11-22 14:23:09] 2025-11-22 19:22:33,254 | INFO     | current chi2=13.868825711724813 (change=19.977408933486842 %)
[2025-11-22 14:23:09] 2025-11-22 19:22:33,254 | INFO     | right removable region: 1559
[2025-11-22 14:23:09] 2025-11-22 19:22:33,261 | INFO     | sum of square deviations: 1177109172105.9175
[2025-11-22 14:23:09] 2025-11-22 19:22:33,367 | INFO     | sum of deviations: 5464867816889.769
[2025-11-22 14:23:09] 2025-11-22 19:22:33,375 | INFO     | mean x: 1763791731.5365384
[2025-11-22 14:23:09] 2025-11-22 19:22:33,376 | INFO     | mean y: 2905305.942948718
[2025-11-22 14:23:09] 2025-11-22 19:22:33,376 | INFO     | intersect: -8185705315.555964
[2025-11-22 14:23:09] 2025-11-22 19:22:33,378 | INFO     | chi2: 13.376548092020508
[2025-11-22 14:23:09] 2025-11-22 19:22:33,378 | INFO     | current chi2=13.376548092020508 (change=22.817831869906808 %)
[2025-11-22 14:23:09] 2025-11-22 19:22:33,378 | INFO     | left removable region: 10
[2025-11-22 14:23:09] 2025-11-22 19:22:33,394 | INFO     | sum of square deviations: 1152382225240.7705
[2025-11-22 14:23:09] 2025-11-22 19:22:33,589 | INFO     | sum of deviations: 5642774940395.975
[2025-11-22 14:23:09] 2025-11-22 19:22:33,589 | INFO     | mean x: 1763791701.058102
[2025-11-22 14:23:09] 2025-11-22 19:22:33,590 | INFO     | mean y: 2920397.3337637186
[2025-11-22 14:23:09] 2025-11-22 19:22:33,590 | INFO     | intersect: -8633692865.882444
[2025-11-22 14:23:09] 2025-11-22 19:22:33,601 | INFO     | chi2: 7.2107298781358935
[2025-11-22 14:23:09] 2025-11-22 19:22:33,601 | INFO     | current memory leak: 4.90 B/s (using 1549 data points, chi2=7.21)
[2025-11-22 14:23:09] 2025-11-22 19:22:33,603 | INFO     | could have reported an average CPU frequency of 2627 MHz (55 samples)
[2025-11-22 14:23:09] 2025-11-22 19:22:33,603 | INFO     | ..............................
[2025-11-22 14:23:09] 2025-11-22 19:22:33,603 | INFO     | . Timing measurements:
[2025-11-22 14:23:09] 2025-11-22 19:22:33,604 | INFO     | . get job = 0 s
[2025-11-22 14:23:09] 2025-11-22 19:22:33,604 | INFO     | . initial setup = 5 s
[2025-11-22 14:23:09] 2025-11-22 19:22:33,604 | INFO     | . payload setup = 75 s
[2025-11-22 14:23:09] 2025-11-22 19:22:33,604 | INFO     | . stage-in = 0 s
[2025-11-22 14:23:09] 2025-11-22 19:22:33,604 | INFO     | . payload execution = 95486 s
[2025-11-22 14:23:09] 2025-11-22 19:22:33,604 | INFO     | . stage-out = 9 s
[2025-11-22 14:23:09] 2025-11-22 19:22:33,604 | INFO     | . log creation = 3 s
[2025-11-22 14:23:09] 2025-11-22 19:22:33,604 | INFO     | ..............................
[2025-11-22 14:23:09] 2025-11-22 19:22:34,473 | INFO     | 
[2025-11-22 14:23:09] 2025-11-22 19:22:34,474 | INFO     | job summary report
[2025-11-22 14:23:09] 2025-11-22 19:22:34,475 | INFO     | --------------------------------------------------
[2025-11-22 14:23:09] 2025-11-22 19:22:34,475 | INFO     | PanDA job id: 6893859502
[2025-11-22 14:23:09] 2025-11-22 19:22:34,475 | INFO     | task id: 47523449
[2025-11-22 14:23:09] 2025-11-22 19:22:34,475 | INFO     | errors: (none)
[2025-11-22 14:23:09] 2025-11-22 19:22:34,476 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 14:23:09] 2025-11-22 19:22:34,476 | INFO     | pilot state: finished 
[2025-11-22 14:23:09] 2025-11-22 19:22:34,476 | INFO     | transexitcode: 0
[2025-11-22 14:23:09] 2025-11-22 19:22:34,476 | INFO     | exeerrorcode: 0
[2025-11-22 14:23:09] 2025-11-22 19:22:34,477 | INFO     | exeerrordiag: 
[2025-11-22 14:23:09] 2025-11-22 19:22:34,477 | INFO     | exitcode: 0
[2025-11-22 14:23:09] 2025-11-22 19:22:34,477 | INFO     | exitmsg: OK
[2025-11-22 14:23:09] 2025-11-22 19:22:34,478 | INFO     | cpuconsumptiontime: 259853 s
[2025-11-22 14:23:09] 2025-11-22 19:22:34,478 | INFO     | nevents: 1000
[2025-11-22 14:23:09] 2025-11-22 19:22:34,478 | INFO     | neventsw: 0
[2025-11-22 14:23:09] 2025-11-22 19:22:34,478 | INFO     | pid: 4063855
[2025-11-22 14:23:09] 2025-11-22 19:22:34,478 | INFO     | pgrp: 4063855
[2025-11-22 14:23:09] 2025-11-22 19:22:34,479 | INFO     | corecount: 8
[2025-11-22 14:23:09] 2025-11-22 19:22:34,479 | INFO     | event service: False
[2025-11-22 14:23:09] 2025-11-22 19:22:34,479 | INFO     | sizes: {0: 2298636, 1: 2298636, 2: 2298863, 13: 2298863, 24: 2298919, 36: 2292512, 37: 2299365, 47: 2299393, 95563: 2366776, 95573: 2375770, 95574: 2375826, 95601:
[2025-11-22 14:23:09] 2025-11-22 19:22:34,479 | INFO     | --------------------------------------------------
[2025-11-22 14:23:09] 2025-11-22 19:22:34,480 | INFO     | 
[2025-11-22 14:23:09] 2025-11-22 19:22:34,480 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 14:23:09] 2025-11-22 19:22:34,587 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,587 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,587 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,587 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,587 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,587 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,587 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,587 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,587 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,588 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,588 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,588 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,588 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,588 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,588 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,588 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,588 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,588 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 14:23:09] 2025-11-22 19:22:34,588 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,588 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 14:23:09] 2025-11-22 19:22:34,588 | INFO     | job 6893859502 has completed (purged errors)
[2025-11-22 14:23:09] 2025-11-22 19:22:34,589 | INFO     | overall cleanup function is called
[2025-11-22 14:23:09] 2025-11-22 19:22:35,636 | INFO     | --- collectZombieJob: --- 10, [4063855]
[2025-11-22 14:23:09] 2025-11-22 19:22:35,636 | INFO     | zombie collector waiting for pid 4063855
[2025-11-22 14:23:09] 2025-11-22 19:22:35,637 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 14:23:09] 2025-11-22 19:22:35,637 | INFO     | collected zombie processes
[2025-11-22 14:23:09] 2025-11-22 19:22:35,637 | INFO     | will attempt to kill all subprocesses of pid=4063855
[2025-11-22 14:23:09] 2025-11-22 19:22:37,287 | INFO     | process IDs to be killed: [4063855] (in reverse order)
[2025-11-22 14:23:09] 2025-11-22 19:22:37,532 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 14:23:09] 2025-11-22 19:22:37,533 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 14:23:09] 2025-11-22 19:22:37,585 | INFO     | did not find any defunct processes belonging to 4063855
[2025-11-22 14:23:09] 2025-11-22 19:22:37,632 | INFO     | did not find any defunct processes belonging to 4063855
[2025-11-22 14:23:09] 2025-11-22 19:22:37,641 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 14:23:09] 2025-11-22 19:22:37,641 | INFO     | ready for new job
[2025-11-22 14:23:09] 2025-11-22 19:22:37,641 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 14:23:09] 2025-11-22 19:22:37,650 | INFO     | ***************************************
[2025-11-22 14:23:09] 2025-11-22 19:22:37,650 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 14:23:09] 2025-11-22 19:22:37,650 | INFO     | ***************************************
[2025-11-22 14:23:09] 2025-11-22 19:22:37,650 | INFO     | 
[2025-11-22 14:23:09] 2025-11-22 19:22:37,664 | INFO     | architecture information:
[2025-11-22 14:23:09] 2025-11-22 19:22:37,669 | INFO     | executing command: cat /etc/os-release
[2025-11-22 14:23:09] 2025-11-22 19:22:37,765 | INFO     | cat /etc/os-release:
[2025-11-22 14:23:09] NAME="CentOS Linux"
[2025-11-22 14:23:09] VERSION="7 (Core)"
[2025-11-22 14:23:09] ID="centos"
[2025-11-22 14:23:09] ID_LIKE="rhel fedora"
[2025-11-22 14:23:09] VERSION_ID="7"
[2025-11-22 14:23:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 14:23:09] ANSI_COLOR="0;31"
[2025-11-22 14:23:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 14:23:09] HOME_URL="https://www.centos.org/"
[2025-11-22 14:23:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 14:23:09] 
[2025-11-22 14:23:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 14:23:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 14:23:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 14:23:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 14:23:09] 
[2025-11-22 14:23:09] 2025-11-22 19:22:37,765 | INFO     | ***************************************
[2025-11-22 14:23:09] 2025-11-22 19:22:38,268 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 14:23:09] 2025-11-22 19:22:38,318 | INFO     | sufficient remaining disk space (69024612352 B)
[2025-11-22 14:23:09] 2025-11-22 19:22:38,318 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 14:23:09] 2025-11-22 19:22:38,318 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 14:23:09] 2025-11-22 19:22:38,318 | INFO     | update_server=False
[2025-11-22 14:23:09] 2025-11-22 19:22:38,319 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 14:23:09] 2025-11-22 19:22:38,319 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:23:09] 2025-11-22 19:22:38,319 | INFO     | aborting loop
[2025-11-22 14:23:09] 2025-11-22 19:22:38,393 | INFO     | all data control threads have been joined
[2025-11-22 14:23:09] 2025-11-22 19:22:38,846 | INFO     | all job control threads have been joined
[2025-11-22 14:23:09] 2025-11-22 19:22:39,170 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 14:23:09] 2025-11-22 19:22:39,192 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:23:09] 2025-11-22 19:22:39,323 | INFO     | [job] retrieve thread has finished
[2025-11-22 14:23:09] 2025-11-22 19:22:39,325 | INFO     | [job] job monitor thread has finished
[2025-11-22 14:23:09] 2025-11-22 19:22:39,401 | INFO     | [data] control thread has finished
[2025-11-22 14:23:09] 2025-11-22 19:22:39,515 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 14:23:09] 2025-11-22 19:22:39,516 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 14:23:09] 2025-11-22 19:22:39,534 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 14:23:09] 2025-11-22 19:22:39,535 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 14:23:09] 2025-11-22 19:22:39,607 | INFO     | all payload control threads have been joined
[2025-11-22 14:23:09] 2025-11-22 19:22:39,625 | INFO     | [payload] validate_post thread has finished
[2025-11-22 14:23:09] 2025-11-22 19:22:39,852 | INFO     | [job] control thread has finished
[2025-11-22 14:23:09] 2025-11-22 19:22:40,044 | INFO     | [job] validate thread has finished
[2025-11-22 14:23:09] 2025-11-22 19:22:40,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 14:23:09] 2025-11-22 19:22:40,201 | INFO     | [job] queue monitor thread has finished
[2025-11-22 14:23:09] 2025-11-22 19:22:40,457 | INFO     | [data] copytool_in thread has finished
[2025-11-22 14:23:09] 2025-11-22 19:22:40,614 | INFO     | [payload] control thread has finished
[2025-11-22 14:23:09] 2025-11-22 19:22:40,739 | INFO     | [payload] failed_post thread has finished
[2025-11-22 14:23:09] 2025-11-22 19:22:40,764 | INFO     | [monitor] cgroup control has ended
[2025-11-22 14:23:09] 2025-11-22 19:22:41,179 | INFO     | [data] copytool_out thread has finished
[2025-11-22 14:23:09] 2025-11-22 19:22:44,205 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 14:23:09] 2025-11-22 19:22:44,855 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140544250804032)>', '<ExcThread(monitor, started 140543904425728)>']
[2025-11-22 14:23:09] 2025-11-22 19:22:49,893 | INFO     | all workflow threads have been joined
[2025-11-22 14:23:09] 2025-11-22 19:22:49,895 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 14:23:09] 2025-11-22 19:22:49,896 | INFO     | traces error code: 0
[2025-11-22 14:23:09] 2025-11-22 19:22:49,896 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 14:23:09] 2025-11-22 19:23:07,696 | INFO     | PID=3995160 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 14:23:09] 2025-11-22 19:23:07,700 | INFO     | .. there are 59 such processes running
[2025-11-22 14:23:09] 2025-11-22 19:23:07,700 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 14:23:09] 2025-11-22 19:23:07,700 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 14:23:09] 2025-11-22 19:23:07,700 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 14:23:09] 2025-11-22 19:23:07,700 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 14:23:09] 2025-11-22 19:23:07,700 | INFO     | [monitor] control thread has ended
[2025-11-22 14:23:09] 2025-11-22 19:23:07,989 [wrapper] ==== pilot stdout END ====
[2025-11-22 14:23:09] 2025-11-22 19:23:08,007 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 14:23:09] 2025-11-22 19:23:08,030 [wrapper] pilotpid: 3995160
[2025-11-22 14:23:09] 2025-11-22 19:23:08,052 [wrapper] Pilot exit status: 0
[2025-11-22 14:23:09] 2025-11-22 19:23:08,171 [wrapper] pandaids: 6893859502
[2025-11-22 14:23:09] 2025-11-22 19:23:08,455 [wrapper] cleanup supervisor_pilot  107244 3995161
[2025-11-22 14:23:09] 2025-11-22 19:23:08,475 [wrapper] Test setup, not cleaning
[2025-11-22 14:23:09] 2025-11-22 19:23:08,495 [wrapper] apfmon messages muted
[2025-11-22 14:23:09] 2025-11-22 19:23:08,514 [wrapper] ==== wrapper stdout END ====
[2025-11-22 14:23:09] 2025-11-22 19:23:08,527 [wrapper] ==== wrapper stderr END ====
[2025-11-22 14:23:09]  *** Error codes and diagnostics ***
[2025-11-22 14:23:09]     "exeErrorCode": 0,
[2025-11-22 14:23:09]     "exeErrorDiag": "",
[2025-11-22 14:23:09]     "pilotErrorCode": 0,
[2025-11-22 14:23:09]     "pilotErrorDiag": "",
[2025-11-22 14:23:09]  *** Listing of results directory ***
[2025-11-22 14:23:09] total 1308304
[2025-11-22 14:23:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 08:12 pilot3.tar.gz
[2025-11-22 14:23:09] -rwx------. 1 boincer umatlas     36292 Nov 20 08:31 runpilot2-wrapper.sh
[2025-11-22 14:23:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 08:31 queuedata.json
[2025-11-22 14:23:09] -rw-r--r--. 1 boincer umatlas       100 Nov 21 11:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 14:23:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 11:46 run_atlas
[2025-11-22 14:23:09] -rw-r--r--. 1 boincer umatlas       105 Nov 21 11:46 job.xml
[2025-11-22 14:23:09] -rw-r--r--. 2 boincer umatlas 409368940 Nov 21 11:46 EVNT.47493127._000532.pool.root.1
[2025-11-22 14:23:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 11:46 start_atlas.sh
[2025-11-22 14:23:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 11:46 shared
[2025-11-22 14:23:09] -rw-r--r--. 2 boincer umatlas    590094 Nov 21 11:46 input.tar.gz
[2025-11-22 14:23:09] -rw-r--r--. 1 boincer umatlas         0 Nov 21 11:46 boinc_lockfile
[2025-11-22 14:23:09] -rw-r--r--. 1 boincer umatlas      2786 Nov 21 11:46 pandaJob.out
[2025-11-22 14:23:09] -rw-------. 1 boincer umatlas        57 Nov 21 11:46 setup.sh.local
[2025-11-22 14:23:09] -rw-------. 1 boincer umatlas    989798 Nov 21 11:47 agis_schedconf.cvmfs.json
[2025-11-22 14:23:09] drwx------. 5 boincer umatlas      4096 Nov 21 11:47 pilot3
[2025-11-22 14:23:09] -rw-r--r--. 1 boincer umatlas       533 Nov 22 13:59 boinc_task_state.xml
[2025-11-22 14:23:09] -rw-r--r--. 1 boincer umatlas      6877 Nov 22 14:18 init_data.xml
[2025-11-22 14:23:09] -rw-------. 1 boincer umatlas 900648776 Nov 22 14:20 HITS.47523449._005319.pool.root.1
[2025-11-22 14:23:09] -rw-------. 1 boincer umatlas      1061 Nov 22 14:21 memory_monitor_summary.json
[2025-11-22 14:23:09] -rw-------. 1 boincer umatlas   1526164 Nov 22 14:22 agis_ddmendpoints.agis.ALL.json
[2025-11-22 14:23:09] -rw-------. 1 boincer umatlas   2447927 Nov 22 14:22 log.47523449._005319.job.log.tgz.1
[2025-11-22 14:23:09] -rw-------. 1 boincer umatlas        95 Nov 22 14:22 pilot_heartbeat.json
[2025-11-22 14:23:09] -rw-------. 1 boincer umatlas      8633 Nov 22 14:22 heartbeat.json
[2025-11-22 14:23:09] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 14:23 boinc_mmap_file
[2025-11-22 14:23:09] -rw-r--r--. 1 boincer umatlas        29 Nov 22 14:23 wrapper_checkpoint.txt
[2025-11-22 14:23:09] -rw-------. 1 boincer umatlas       823 Nov 22 14:23 pilotlog.txt
[2025-11-22 14:23:09] -rw-------. 1 boincer umatlas  10432705 Nov 22 14:23 log.47523449._005319.job.log.1
[2025-11-22 14:23:09] -rw-------. 1 boincer umatlas       353 Nov 22 14:23 output.list
[2025-11-22 14:23:09] -rw-r--r--. 1 boincer umatlas       620 Nov 22 14:23 runtime_log
[2025-11-22 14:23:09] -rw-------. 1 boincer umatlas  12902400 Nov 22 14:23 result.tar.gz
[2025-11-22 14:23:09] -rw-r--r--. 1 boincer umatlas      9348 Nov 22 14:23 runtime_log.err
[2025-11-22 14:23:09] -rw-------. 1 boincer umatlas       662 Nov 22 14:23 kmUMDmOwJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmliGKDmHgdgnm.diag
[2025-11-22 14:23:09] -rw-r--r--. 1 boincer umatlas     21896 Nov 22 14:23 stderr.txt
[2025-11-22 14:23:09] HITS file was successfully produced:
[2025-11-22 14:23:09] -rw-------. 1 boincer umatlas 900648776 Nov 22 14:20 shared/HITS.pool.root.1
[2025-11-22 14:23:09]  *** Contents of shared directory: ***
[2025-11-22 14:23:09] total 1292520
[2025-11-22 14:23:09] -rw-r--r--. 2 boincer umatlas 409368940 Nov 21 11:46 ATLAS.root_0
[2025-11-22 14:23:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 11:46 start_atlas.sh
[2025-11-22 14:23:09] -rw-r--r--. 2 boincer umatlas    590094 Nov 21 11:46 input.tar.gz
[2025-11-22 14:23:09] -rw-------. 1 boincer umatlas 900648776 Nov 22 14:20 HITS.pool.root.1
[2025-11-22 14:23:09] -rw-------. 1 boincer umatlas  12902400 Nov 22 14:23 result.tar.gz
14:23:10 (3977070): run_atlas exited; CPU time 264181.738534
14:23:10 (3977070): called boinc_finish(0)

</stderr_txt>
]]>

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