Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:20 (3394030): wrapper (7.7.26015): starting
00:01:20 (3394030): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 00:01:20] Arguments: --nthreads 9
[2025-11-21 00:01:20] Threads: 9
[2025-11-21 00:01:20] Checking for CVMFS
[2025-11-21 00:01:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:01:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:01:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:01:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:01:22] 2.13.2.0 89619 11825 103440 153108 2 293 34445201 40960001 6659 16776704 0 10125308 99.866 3031806 25580 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 00:01:22] CVMFS is ok
[2025-11-21 00:01:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:01:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:01:22] Further information can be found at the LHC@home message board.
[2025-11-21 00:01:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:01:22] Checking for apptainer binary...
[2025-11-21 00:01:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:01:22] Running /usr/bin/apptainer --version
[2025-11-21 00:01:22] apptainer version 1.4.4-1.el9
[2025-11-21 00:01:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:01:23] c-211-6.aglt2.org
[2025-11-21 00:01:23] apptainer works
[2025-11-21 00:01:23] Set ATHENA_PROC_NUMBER=9
[2025-11-21 00:01:23] Set ATHENA_CORE_NUMBER=9
[2025-11-21 00:01:23] Starting ATLAS job with PandaID=6893876779
[2025-11-21 00:01:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 20:41:32]  *** The last 200 lines of the pilot log: ***
[2025-11-22 20:41:32] 2025-11-23 01:39:42,588 | INFO     | monitor loop #8176: job 0:6893876779 is in state 'finished'
[2025-11-22 20:41:32] 2025-11-23 01:39:42,588 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:41:32] 2025-11-23 01:39:43,164 | INFO     | time since job start (160645s) is within the limit (172800.0s)
[2025-11-22 20:41:32] 2025-11-23 01:39:45,126 | INFO     | monitor loop #8177: job 0:6893876779 is in state 'finished'
[2025-11-22 20:41:32] 2025-11-23 01:39:45,126 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:41:32] 2025-11-23 01:39:45,171 | INFO     | time since job start (160647s) is within the limit (172800.0s)
[2025-11-22 20:41:32] 2025-11-23 01:39:47,701 | INFO     | monitor loop #8178: job 0:6893876779 is in state 'finished'
[2025-11-22 20:41:32] 2025-11-23 01:39:47,701 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:41:32] 2025-11-23 01:39:47,764 | INFO     | PID=3402951 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 20:41:32] 2025-11-23 01:39:47,764 | INFO     | .. there are 10 such processes running
[2025-11-22 20:41:32] 2025-11-23 01:39:48,771 | INFO     | time since job start (160650s) is within the limit (172800.0s)
[2025-11-22 20:41:32] 2025-11-23 01:39:49,324 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 20:41:32] 2025-11-23 01:39:49,341 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2478.9287708333336
[2025-11-22 20:41:32] 2025-11-23 01:39:49,365 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6893876779/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 20:41:32] 2025-11-23 01:39:49,366 | INFO     | extracted standard info from prmon json
[2025-11-22 20:41:32] 2025-11-23 01:39:49,367 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 20:41:32] 2025-11-23 01:39:49,367 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 20:41:32] 2025-11-23 01:39:49,480 | INFO     | fitting pss+swap vs Time
[2025-11-22 20:41:32] 2025-11-23 01:39:49,488 | INFO     | sum of square deviations: 5648015822299.068
[2025-11-22 20:41:32] 2025-11-23 01:39:50,209 | INFO     | sum of deviations: -7697396312483.204
[2025-11-22 20:41:32] 2025-11-23 01:39:50,209 | INFO     | mean x: 1763781673.1828203
[2025-11-22 20:41:32] 2025-11-23 01:39:50,209 | INFO     | mean y: 3092816.083618396
[2025-11-22 20:41:32] 2025-11-23 01:39:50,210 | INFO     | intersect: 2406862028.907188
[2025-11-22 20:41:32] 2025-11-23 01:39:50,225 | INFO     | chi2: 87.45777192831194
[2025-11-22 20:41:32] 2025-11-23 01:39:50,228 | INFO     | sum of square deviations: 5615884430138.992
[2025-11-22 20:41:32] 2025-11-23 01:39:50,241 | INFO     | monitor loop #8179: job 0:6893876779 is in state 'finished'
[2025-11-22 20:41:32] 2025-11-23 01:39:50,257 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:41:32] 2025-11-23 01:39:50,915 | INFO     | time since job start (160652s) is within the limit (172800.0s)
[2025-11-22 20:41:32] 2025-11-23 01:39:51,183 | INFO     | sum of deviations: -6707301682757.977
[2025-11-22 20:41:32] 2025-11-23 01:39:51,184 | INFO     | mean x: 1763781520.6926885
[2025-11-22 20:41:32] 2025-11-23 01:39:51,184 | INFO     | mean y: 3097514.614623001
[2025-11-22 20:41:32] 2025-11-23 01:39:51,184 | INFO     | intersect: 2109660587.4353178
[2025-11-22 20:41:32] 2025-11-23 01:39:51,205 | INFO     | chi2: 83.56981082551248
[2025-11-22 20:41:32] 2025-11-23 01:39:51,206 | INFO     | current chi2=83.56981082551248 (change=4.445529559095536 %)
[2025-11-22 20:41:32] 2025-11-23 01:39:51,206 | INFO     | right removable region: 2625
[2025-11-22 20:41:32] 2025-11-23 01:39:51,218 | INFO     | sum of square deviations: 5615875309305.069
[2025-11-22 20:41:32] 2025-11-23 01:39:51,986 | INFO     | sum of deviations: -8858365957105.018
[2025-11-22 20:41:32] 2025-11-23 01:39:51,986 | INFO     | mean x: 1763781825.6945925
[2025-11-22 20:41:32] 2025-11-23 01:39:51,986 | INFO     | mean y: 3098324.809215537
[2025-11-22 20:41:32] 2025-11-23 01:39:51,986 | INFO     | intersect: 2785251421.158308
[2025-11-22 20:41:32] 2025-11-23 01:39:51,995 | INFO     | chi2: 83.36954216437927
[2025-11-22 20:41:32] 2025-11-23 01:39:51,995 | INFO     | current chi2=83.36954216437927 (change=4.674518540540622 %)
[2025-11-22 20:41:32] 2025-11-23 01:39:51,995 | INFO     | left removable region: 10
[2025-11-22 20:41:32] 2025-11-23 01:39:52,004 | INFO     | sum of square deviations: 5545606741101.188
[2025-11-22 20:41:32] 2025-11-23 01:39:53,004 | INFO     | time since job start (160655s) is within the limit (172800.0s)
[2025-11-22 20:41:32] 2025-11-23 01:39:53,050 | INFO     | monitor loop #8180: job 0:6893876779 is in state 'finished'
[2025-11-22 20:41:32] 2025-11-23 01:39:53,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:41:32] 2025-11-23 01:39:53,105 | INFO     | sum of deviations: -8400248278278.426
[2025-11-22 20:41:32] 2025-11-23 01:39:53,106 | INFO     | mean x: 1763781795.2175908
[2025-11-22 20:41:32] 2025-11-23 01:39:53,106 | INFO     | mean y: 3107405.030592734
[2025-11-22 20:41:32] 2025-11-23 01:39:53,106 | INFO     | intersect: 2674808749.939401
[2025-11-22 20:41:32] 2025-11-23 01:39:53,149 | INFO     | chi2: 76.99670344996794
[2025-11-22 20:41:32] 2025-11-23 01:39:53,149 | INFO     | current memory leak: -1.51 B/s (using 2615 data points, chi2=77.00)
[2025-11-22 20:41:32] 2025-11-23 01:39:53,229 | INFO     | could have reported an average CPU frequency of 2576 MHz (90 samples)
[2025-11-22 20:41:32] 2025-11-23 01:39:53,230 | INFO     | ..............................
[2025-11-22 20:41:32] 2025-11-23 01:39:53,231 | INFO     | . Timing measurements:
[2025-11-22 20:41:32] 2025-11-23 01:39:53,231 | INFO     | . get job = 0 s
[2025-11-22 20:41:32] 2025-11-23 01:39:53,231 | INFO     | . initial setup = 4 s
[2025-11-22 20:41:32] 2025-11-23 01:39:53,231 | INFO     | . payload setup = 31 s
[2025-11-22 20:41:32] 2025-11-23 01:39:53,231 | INFO     | . stage-in = 0 s
[2025-11-22 20:41:32] 2025-11-23 01:39:53,231 | INFO     | . payload execution = 160499 s
[2025-11-22 20:41:32] 2025-11-23 01:39:53,231 | INFO     | . stage-out = 14 s
[2025-11-22 20:41:32] 2025-11-23 01:39:53,231 | INFO     | . log creation = 4 s
[2025-11-22 20:41:32] 2025-11-23 01:39:53,232 | INFO     | ..............................
[2025-11-22 20:41:32] 2025-11-23 01:39:54,607 | INFO     | 
[2025-11-22 20:41:32] 2025-11-23 01:39:54,607 | INFO     | job summary report
[2025-11-22 20:41:32] 2025-11-23 01:39:54,607 | INFO     | --------------------------------------------------
[2025-11-22 20:41:32] 2025-11-23 01:39:54,607 | INFO     | PanDA job id: 6893876779
[2025-11-22 20:41:32] 2025-11-23 01:39:54,608 | INFO     | task id: 47523449
[2025-11-22 20:41:32] 2025-11-23 01:39:54,608 | INFO     | errors: (none)
[2025-11-22 20:41:32] 2025-11-23 01:39:54,608 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 20:41:32] 2025-11-23 01:39:54,608 | INFO     | pilot state: finished 
[2025-11-22 20:41:32] 2025-11-23 01:39:54,608 | INFO     | transexitcode: 0
[2025-11-22 20:41:32] 2025-11-23 01:39:54,608 | INFO     | exeerrorcode: 0
[2025-11-22 20:41:32] 2025-11-23 01:39:54,608 | INFO     | exeerrordiag: 
[2025-11-22 20:41:32] 2025-11-23 01:39:54,609 | INFO     | exitcode: 0
[2025-11-22 20:41:32] 2025-11-23 01:39:54,609 | INFO     | exitmsg: OK
[2025-11-22 20:41:32] 2025-11-23 01:39:54,609 | INFO     | cpuconsumptiontime: 340423 s
[2025-11-22 20:41:32] 2025-11-23 01:39:54,609 | INFO     | nevents: 1000
[2025-11-22 20:41:32] 2025-11-23 01:39:54,609 | INFO     | neventsw: 0
[2025-11-22 20:41:32] 2025-11-23 01:39:54,609 | INFO     | pid: 3413228
[2025-11-22 20:41:32] 2025-11-23 01:39:54,609 | INFO     | pgrp: 3413228
[2025-11-22 20:41:32] 2025-11-23 01:39:54,609 | INFO     | corecount: 9
[2025-11-22 20:41:32] 2025-11-23 01:39:54,610 | INFO     | event service: False
[2025-11-22 20:41:32] 2025-11-23 01:39:54,610 | INFO     | sizes: {0: 2298478, 1: 2298534, 2: 2298761, 13: 2298761, 24: 2298817, 27: 2299107, 35: 2299263, 160535: 2395473, 160536: 2395472, 160553: 2404522, 160554: 2404578,
[2025-11-22 20:41:32] 2025-11-23 01:39:54,610 | INFO     | --------------------------------------------------
[2025-11-22 20:41:32] 2025-11-23 01:39:54,610 | INFO     | 
[2025-11-22 20:41:32] 2025-11-23 01:39:54,610 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-22 20:41:32] 2025-11-23 01:39:54,723 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,724 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,724 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,724 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,724 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,724 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,724 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,724 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,724 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,725 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,725 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,725 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,725 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,725 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,725 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,725 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,726 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,726 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 20:41:32] 2025-11-23 01:39:54,726 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,726 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 20:41:32] 2025-11-23 01:39:54,726 | INFO     | job 6893876779 has completed (purged errors)
[2025-11-22 20:41:32] 2025-11-23 01:39:54,727 | INFO     | overall cleanup function is called
[2025-11-22 20:41:32] 2025-11-23 01:39:55,772 | INFO     | --- collectZombieJob: --- 10, [3413228]
[2025-11-22 20:41:32] 2025-11-23 01:39:55,772 | INFO     | zombie collector waiting for pid 3413228
[2025-11-22 20:41:32] 2025-11-23 01:39:55,772 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 20:41:32] 2025-11-23 01:39:55,772 | INFO     | collected zombie processes
[2025-11-22 20:41:32] 2025-11-23 01:39:55,772 | INFO     | will attempt to kill all subprocesses of pid=3413228
[2025-11-22 20:41:32] 2025-11-23 01:39:56,458 | INFO     | process IDs to be killed: [3413228] (in reverse order)
[2025-11-22 20:41:32] 2025-11-23 01:39:56,556 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 20:41:32] 2025-11-23 01:39:56,557 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 20:41:32] 2025-11-23 01:39:56,576 | INFO     | did not find any defunct processes belonging to 3413228
[2025-11-22 20:41:32] 2025-11-23 01:39:56,591 | INFO     | did not find any defunct processes belonging to 3413228
[2025-11-22 20:41:32] 2025-11-23 01:39:56,593 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 20:41:32] 2025-11-23 01:39:56,593 | INFO     | ready for new job
[2025-11-22 20:41:32] 2025-11-23 01:39:56,593 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 20:41:32] 2025-11-23 01:39:56,600 | INFO     | ***************************************
[2025-11-22 20:41:32] 2025-11-23 01:39:56,600 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 20:41:32] 2025-11-23 01:39:56,600 | INFO     | ***************************************
[2025-11-22 20:41:32] 2025-11-23 01:39:56,600 | INFO     | 
[2025-11-22 20:41:32] 2025-11-23 01:39:56,603 | INFO     | architecture information:
[2025-11-22 20:41:32] 2025-11-23 01:39:56,604 | INFO     | executing command: cat /etc/os-release
[2025-11-22 20:41:32] 2025-11-23 01:39:56,683 | INFO     | cat /etc/os-release:
[2025-11-22 20:41:32] NAME="CentOS Linux"
[2025-11-22 20:41:32] VERSION="7 (Core)"
[2025-11-22 20:41:32] ID="centos"
[2025-11-22 20:41:32] ID_LIKE="rhel fedora"
[2025-11-22 20:41:32] VERSION_ID="7"
[2025-11-22 20:41:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 20:41:32] ANSI_COLOR="0;31"
[2025-11-22 20:41:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 20:41:32] HOME_URL="https://www.centos.org/"
[2025-11-22 20:41:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 20:41:32] 
[2025-11-22 20:41:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 20:41:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 20:41:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 20:41:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 20:41:32] 
[2025-11-22 20:41:32] 2025-11-23 01:39:56,683 | INFO     | ***************************************
[2025-11-22 20:41:32] 2025-11-23 01:39:57,229 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-22 20:41:32] 2025-11-23 01:39:57,296 | INFO     | sufficient remaining disk space (57672728576 B)
[2025-11-22 20:41:32] 2025-11-23 01:39:57,296 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 20:41:32] 2025-11-23 01:39:57,297 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 20:41:32] 2025-11-23 01:39:57,297 | INFO     | update_server=False
[2025-11-22 20:41:32] 2025-11-23 01:39:57,297 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 20:41:32] 2025-11-23 01:39:57,298 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:41:32] 2025-11-23 01:39:57,298 | INFO     | aborting loop
[2025-11-22 20:41:32] 2025-11-23 01:39:57,665 | INFO     | all data control threads have been joined
[2025-11-22 20:41:32] 2025-11-23 01:39:57,776 | INFO     | all payload control threads have been joined
[2025-11-22 20:41:32] 2025-11-23 01:39:58,256 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 20:41:32] 2025-11-23 01:39:58,304 | INFO     | [job] job monitor thread has finished
[2025-11-22 20:41:32] 2025-11-23 01:39:58,316 | INFO     | [job] retrieve thread has finished
[2025-11-22 20:41:32] 2025-11-23 01:39:58,536 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 20:41:32] 2025-11-23 01:39:58,659 | INFO     | [payload] validate_post thread has finished
[2025-11-22 20:41:32] 2025-11-23 01:39:58,708 | INFO     | [data] control thread has finished
[2025-11-22 20:41:32] 2025-11-23 01:39:58,782 | INFO     | [payload] control thread has finished
[2025-11-22 20:41:32] 2025-11-23 01:39:59,024 | INFO     | all job control threads have been joined
[2025-11-22 20:41:32] 2025-11-23 01:39:59,383 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 20:41:32] 2025-11-23 01:39:59,409 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 20:41:32] 2025-11-23 01:39:59,409 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 20:41:32] 2025-11-23 01:39:59,431 | INFO     | [data] copytool_in thread has finished
[2025-11-22 20:41:32] 2025-11-23 01:39:59,583 | INFO     | [job] validate thread has finished
[2025-11-22 20:41:32] 2025-11-23 01:39:59,665 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:41:32] 2025-11-23 01:39:59,686 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 20:41:32] 2025-11-23 01:39:59,911 | INFO     | [payload] failed_post thread has finished
[2025-11-22 20:41:32] 2025-11-23 01:40:00,030 | INFO     | [job] control thread has finished
[2025-11-22 20:41:32] 2025-11-23 01:40:00,544 | INFO     | [data] copytool_out thread has finished
[2025-11-22 20:41:32] 2025-11-23 01:40:00,671 | INFO     | [job] queue monitor thread has finished
[2025-11-22 20:41:32] 2025-11-23 01:40:02,303 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 20:41:32] 2025-11-23 01:40:26,697 | INFO     | PID=3402951 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 20:41:32] 2025-11-23 01:40:26,697 | INFO     | .. there are 10 such processes running
[2025-11-22 20:41:32] 2025-11-23 01:40:26,697 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 20:41:32] 2025-11-23 01:40:26,697 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 20:41:32] 2025-11-23 01:40:26,697 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 20:41:32] 2025-11-23 01:40:45,906 | INFO     | [monitor] cgroup control has ended
[2025-11-22 20:41:32] 2025-11-23 01:40:46,345 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139668203296576)>', '<ExcThread(monitor, started 139667571734272)>']
[2025-11-22 20:41:32] 2025-11-23 01:40:46,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 20:41:32] 2025-11-23 01:40:46,876 | INFO     | [monitor] control thread has ended
[2025-11-22 20:41:32] 2025-11-23 01:40:51,371 | INFO     | all workflow threads have been joined
[2025-11-22 20:41:32] 2025-11-23 01:40:51,371 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 20:41:32] 2025-11-23 01:40:51,371 | INFO     | traces error code: 0
[2025-11-22 20:41:32] 2025-11-23 01:40:51,372 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 20:41:32] 2025-11-23 01:40:51,593 [wrapper] ==== pilot stdout END ====
[2025-11-22 20:41:32] 2025-11-23 01:40:51,609 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 20:41:32] 2025-11-23 01:40:51,624 [wrapper] pilotpid: 3402951
[2025-11-22 20:41:32] 2025-11-23 01:40:51,733 [wrapper] Pilot exit status: 0
[2025-11-22 20:41:32] 2025-11-23 01:40:51,931 [wrapper] pandaids: 6893876779
[2025-11-22 20:41:32] 2025-11-23 01:40:52,085 [wrapper] cleanup supervisor_pilot 3448559 3402952
[2025-11-22 20:41:32] 2025-11-23 01:40:52,131 [wrapper] Test setup, not cleaning
[2025-11-22 20:41:32] 2025-11-23 01:40:52,195 [wrapper] apfmon messages muted
[2025-11-22 20:41:32] 2025-11-23 01:40:52,281 [wrapper] ==== wrapper stdout END ====
[2025-11-22 20:41:32] 2025-11-23 01:40:52,291 [wrapper] ==== wrapper stderr END ====
[2025-11-22 20:41:32]  *** Error codes and diagnostics ***
[2025-11-22 20:41:32]     "exeErrorCode": 0,
[2025-11-22 20:41:32]     "exeErrorDiag": "",
[2025-11-22 20:41:32]     "pilotErrorCode": 0,
[2025-11-22 20:41:32]     "pilotErrorDiag": "",
[2025-11-22 20:41:32]  *** Listing of results directory ***
[2025-11-22 20:41:32] total 1342104
[2025-11-22 20:41:32] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 12:21 pilot3.tar.gz
[2025-11-22 20:41:32] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 12:37 queuedata.json
[2025-11-22 20:41:32] -rwx------. 1 boincer umatlas     36292 Nov 20 12:38 runpilot2-wrapper.sh
[2025-11-22 20:41:32] -rw-r--r--. 1 boincer umatlas       100 Nov 21 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 20:41:32] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 00:01 run_atlas
[2025-11-22 20:41:32] -rw-r--r--. 1 boincer umatlas       105 Nov 21 00:01 job.xml
[2025-11-22 20:41:32] -rw-r--r--. 2 boincer umatlas 409939790 Nov 21 00:01 EVNT.47493127._000772.pool.root.1
[2025-11-22 20:41:32] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 00:01 shared
[2025-11-22 20:41:32] -rw-r--r--. 2 boincer umatlas    590101 Nov 21 00:01 input.tar.gz
[2025-11-22 20:41:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:01 start_atlas.sh
[2025-11-22 20:41:32] -rw-r--r--. 1 boincer umatlas         0 Nov 21 00:01 boinc_lockfile
[2025-11-22 20:41:32] -rw-r--r--. 1 boincer umatlas      2784 Nov 21 00:01 pandaJob.out
[2025-11-22 20:41:32] -rw-------. 1 boincer umatlas        57 Nov 21 00:01 setup.sh.local
[2025-11-22 20:41:32] -rw-------. 1 boincer umatlas    989817 Nov 21 00:02 agis_schedconf.cvmfs.json
[2025-11-22 20:41:32] drwx------. 5 boincer umatlas      4096 Nov 21 00:02 pilot3
[2025-11-22 20:41:32] -rw-r--r--. 1 boincer umatlas       533 Nov 22 18:22 boinc_task_state.xml
[2025-11-22 20:41:32] -rw-------. 1 boincer umatlas 917446607 Nov 22 20:37 HITS.47523449._007716.pool.root.1
[2025-11-22 20:41:32] -rw-r--r--. 1 boincer umatlas      6612 Nov 22 20:37 init_data.xml
[2025-11-22 20:41:32] -rw-------. 1 boincer umatlas      1079 Nov 22 20:38 memory_monitor_summary.json
[2025-11-22 20:41:32] -rw-------. 1 boincer umatlas   1526164 Nov 22 20:39 agis_ddmendpoints.agis.ALL.json
[2025-11-22 20:41:32] -rw-------. 1 boincer umatlas   3274715 Nov 22 20:39 log.47523449._007716.job.log.tgz.1
[2025-11-22 20:41:32] -rw-------. 1 boincer umatlas        95 Nov 22 20:39 pilot_heartbeat.json
[2025-11-22 20:41:32] -rw-------. 1 boincer umatlas      8667 Nov 22 20:39 heartbeat.json
[2025-11-22 20:41:32] -rw-------. 1 boincer umatlas      4824 Nov 22 20:40 pilotlog.txt
[2025-11-22 20:41:32] -rw-------. 1 boincer umatlas  18230458 Nov 22 20:40 log.47523449._007716.job.log.1
[2025-11-22 20:41:32] -rw-------. 1 boincer umatlas       353 Nov 22 20:40 output.list
[2025-11-22 20:41:32] -rw-r--r--. 1 boincer umatlas       620 Nov 22 20:40 runtime_log
[2025-11-22 20:41:32] -rw-------. 1 boincer umatlas  21524480 Nov 22 20:40 result.tar.gz
[2025-11-22 20:41:32] -rw-------. 1 boincer umatlas       668 Nov 22 20:40 YoaKDmmmNg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyMIKDm6MCSam.diag
[2025-11-22 20:41:32] -rw-r--r--. 1 boincer umatlas      9339 Nov 22 20:40 runtime_log.err
[2025-11-22 20:41:32] -rw-r--r--. 1 boincer umatlas        29 Nov 22 20:41 wrapper_checkpoint.txt
[2025-11-22 20:41:32] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 20:41 boinc_mmap_file
[2025-11-22 20:41:32] -rw-r--r--. 1 boincer umatlas     19515 Nov 22 20:41 stderr.txt
[2025-11-22 20:41:32] HITS file was successfully produced:
[2025-11-22 20:41:32] -rw-------. 1 boincer umatlas 917446607 Nov 22 20:37 shared/HITS.pool.root.1
[2025-11-22 20:41:32]  *** Contents of shared directory: ***
[2025-11-22 20:41:32] total 1317900
[2025-11-22 20:41:32] -rw-r--r--. 2 boincer umatlas 409939790 Nov 21 00:01 ATLAS.root_0
[2025-11-22 20:41:32] -rw-r--r--. 2 boincer umatlas    590101 Nov 21 00:01 input.tar.gz
[2025-11-22 20:41:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:01 start_atlas.sh
[2025-11-22 20:41:32] -rw-------. 1 boincer umatlas 917446607 Nov 22 20:37 HITS.pool.root.1
[2025-11-22 20:41:32] -rw-------. 1 boincer umatlas  21524480 Nov 22 20:40 result.tar.gz
20:41:34 (3394030): run_atlas exited; CPU time 344696.114858
20:41:34 (3394030): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN