Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:05:37 (18363): wrapper (7.7.26015): starting
04:05:37 (18363): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 04:05:37] Arguments: --nthreads 8
[2025-11-24 04:05:37] Threads: 8
[2025-11-24 04:05:37] Checking for CVMFS
[2025-11-24 04:05:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 04:05:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 04:05:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 04:05:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 04:05:40] 2.11.2.0 23292 281780 137612 153230 3 13 20935397 25165825 4631 130560 2 172254275 99.907 77630609 2977 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 04:05:40] CVMFS is ok
[2025-11-24 04:05:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 04:05:40] Checking for apptainer binary...
[2025-11-24 04:05:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 04:05:40] Running /usr/bin/apptainer --version
[2025-11-24 04:05:40] apptainer version 1.3.2-1.el7
[2025-11-24 04:05:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 04:06:11] cg-vwn268.simple-grid.lan
[2025-11-24 04:06:11] apptainer works
[2025-11-24 04:06:11] Set ATHENA_PROC_NUMBER=8
[2025-11-24 04:06:11] Set ATHENA_CORE_NUMBER=8
[2025-11-24 04:06:11] Starting ATLAS job with PandaID=6893857677
[2025-11-24 04:06:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 23:48:46]  *** The last 200 lines of the pilot log: ***
[2025-11-24 23:48:46] 2025-11-24 22:47:33,976 | INFO     | time since job start (70677s) is within the limit (172800.0s)
[2025-11-24 23:48:46] 2025-11-24 22:47:35,988 | INFO     | time since job start (70679s) is within the limit (172800.0s)
[2025-11-24 23:48:46] 2025-11-24 22:47:35,988 | INFO     | 70690s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-24 23:48:46] 2025-11-24 22:47:36,016 | INFO     | monitor loop #4767: job 0:6893857677 is in state 'finished'
[2025-11-24 23:48:46] 2025-11-24 22:47:36,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:48:46] 2025-11-24 22:47:37,997 | INFO     | time since job start (70681s) is within the limit (172800.0s)
[2025-11-24 23:48:46] 2025-11-24 22:47:38,521 | INFO     | monitor loop #4768: job 0:6893857677 is in state 'finished'
[2025-11-24 23:48:46] 2025-11-24 22:47:38,521 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:48:46] 2025-11-24 22:47:40,005 | INFO     | time since job start (70684s) is within the limit (172800.0s)
[2025-11-24 23:48:46] 2025-11-24 22:47:41,026 | INFO     | monitor loop #4769: job 0:6893857677 is in state 'finished'
[2025-11-24 23:48:46] 2025-11-24 22:47:41,026 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:48:46] 2025-11-24 22:47:42,012 | INFO     | time since job start (70686s) is within the limit (172800.0s)
[2025-11-24 23:48:46] 2025-11-24 22:47:43,534 | INFO     | monitor loop #4770: job 0:6893857677 is in state 'finished'
[2025-11-24 23:48:46] 2025-11-24 22:47:43,534 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:48:46] 2025-11-24 22:47:44,023 | INFO     | time since job start (70688s) is within the limit (172800.0s)
[2025-11-24 23:48:46] 2025-11-24 22:47:45,810 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 23:48:46] 2025-11-24 22:47:45,811 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 23:48:46] 2025-11-24 22:47:45,813 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6893857677/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 23:48:46] 2025-11-24 22:47:45,814 | INFO     | extracted standard info from prmon json
[2025-11-24 23:48:46] 2025-11-24 22:47:45,814 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 23:48:46] 2025-11-24 22:47:45,814 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 23:48:46] 2025-11-24 22:47:45,838 | INFO     | fitting pss+swap vs Time
[2025-11-24 23:48:46] 2025-11-24 22:47:45,840 | INFO     | sum of square deviations: 470370471096.4351
[2025-11-24 23:48:46] 2025-11-24 22:47:45,884 | INFO     | sum of deviations: 2538182571221.2437
[2025-11-24 23:48:46] 2025-11-24 22:47:45,884 | INFO     | mean x: 1763989318.9442995
[2025-11-24 23:48:46] 2025-11-24 22:47:45,884 | INFO     | mean y: 2814383.4412532635
[2025-11-24 23:48:46] 2025-11-24 22:47:45,884 | INFO     | intersect: -9515910154.5345
[2025-11-24 23:48:46] 2025-11-24 22:47:45,886 | INFO     | chi2: 28.434537708240835
[2025-11-24 23:48:46] 2025-11-24 22:47:45,888 | INFO     | sum of square deviations: 464256901336.9571
[2025-11-24 23:48:46] 2025-11-24 22:47:45,933 | INFO     | sum of deviations: 2911341400012.6357
[2025-11-24 23:48:46] 2025-11-24 22:47:45,933 | INFO     | mean x: 1763989166.4484265
[2025-11-24 23:48:46] 2025-11-24 22:47:45,933 | INFO     | mean y: 2823690.3243006994
[2025-11-24 23:48:46] 2025-11-24 22:47:45,933 | INFO     | intersect: -11059100590.533487
[2025-11-24 23:48:46] 2025-11-24 22:47:45,935 | INFO     | chi2: 25.246023874564816
[2025-11-24 23:48:46] 2025-11-24 22:47:45,935 | INFO     | current chi2=25.246023874564816 (change=11.21352443423735 %)
[2025-11-24 23:48:46] 2025-11-24 22:47:45,935 | INFO     | right removable region: 1143
[2025-11-24 23:48:46] 2025-11-24 22:47:45,937 | INFO     | sum of square deviations: 464256239486.95715
[2025-11-24 23:48:46] 2025-11-24 22:47:45,978 | INFO     | sum of deviations: 2046613594138.788
[2025-11-24 23:48:46] 2025-11-24 22:47:45,978 | INFO     | mean x: 1763989471.4484265
[2025-11-24 23:48:46] 2025-11-24 22:47:45,978 | INFO     | mean y: 2826644.3863636362
[2025-11-24 23:48:46] 2025-11-24 22:47:45,978 | INFO     | intersect: -7773492821.289812
[2025-11-24 23:48:46] 2025-11-24 22:47:45,980 | INFO     | chi2: 23.31228740784904
[2025-11-24 23:48:46] 2025-11-24 22:47:45,980 | INFO     | current chi2=23.31228740784904 (change=18.01418525931327 %)
[2025-11-24 23:48:46] 2025-11-24 22:47:45,980 | INFO     | left removable region: 10
[2025-11-24 23:48:46] 2025-11-24 22:47:45,982 | INFO     | sum of square deviations: 450992696973.9664
[2025-11-24 23:48:46] 2025-11-24 22:47:46,023 | INFO     | sum of deviations: 2047434535262.7302
[2025-11-24 23:48:46] 2025-11-24 22:47:46,024 | INFO     | mean x: 1763989440.9576347
[2025-11-24 23:48:46] 2025-11-24 22:47:46,024 | INFO     | mean y: 2849643.2859664606
[2025-11-24 23:48:46] 2025-11-24 22:47:46,024 | INFO     | intersect: -8005379592.993532
[2025-11-24 23:48:46] 2025-11-24 22:47:46,025 | INFO     | chi2: 15.078258511052542
[2025-11-24 23:48:46] 2025-11-24 22:47:46,026 | INFO     | current memory leak: 4.54 B/s (using 1133 data points, chi2=15.08)
[2025-11-24 23:48:46] 2025-11-24 22:47:46,027 | INFO     | could have reported an average CPU frequency of 1999 MHz (39 samples)
[2025-11-24 23:48:46] 2025-11-24 22:47:46,027 | INFO     | ..............................
[2025-11-24 23:48:46] 2025-11-24 22:47:46,028 | INFO     | . Timing measurements:
[2025-11-24 23:48:46] 2025-11-24 22:47:46,028 | INFO     | . get job = 0 s
[2025-11-24 23:48:46] 2025-11-24 22:47:46,028 | INFO     | . initial setup = 10 s
[2025-11-24 23:48:46] 2025-11-24 22:47:46,028 | INFO     | . payload setup = 170 s
[2025-11-24 23:48:46] 2025-11-24 22:47:46,028 | INFO     | . stage-in = 0 s
[2025-11-24 23:48:46] 2025-11-24 22:47:46,028 | INFO     | . payload execution = 70207 s
[2025-11-24 23:48:46] 2025-11-24 22:47:46,028 | INFO     | . stage-out = 5 s
[2025-11-24 23:48:46] 2025-11-24 22:47:46,028 | INFO     | . log creation = 2 s
[2025-11-24 23:48:46] 2025-11-24 22:47:46,028 | INFO     | ..............................
[2025-11-24 23:48:46] 2025-11-24 22:47:46,045 | INFO     | time since job start (70690s) is within the limit (172800.0s)
[2025-11-24 23:48:46] 2025-11-24 22:47:46,157 | INFO     | 
[2025-11-24 23:48:46] 2025-11-24 22:47:46,157 | INFO     | job summary report
[2025-11-24 23:48:46] 2025-11-24 22:47:46,157 | INFO     | --------------------------------------------------
[2025-11-24 23:48:46] 2025-11-24 22:47:46,157 | INFO     | PanDA job id: 6893857677
[2025-11-24 23:48:46] 2025-11-24 22:47:46,157 | INFO     | task id: 47523449
[2025-11-24 23:48:46] 2025-11-24 22:47:46,157 | INFO     | errors: (none)
[2025-11-24 23:48:46] 2025-11-24 22:47:46,157 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 23:48:46] 2025-11-24 22:47:46,157 | INFO     | pilot state: finished 
[2025-11-24 23:48:46] 2025-11-24 22:47:46,158 | INFO     | transexitcode: 0
[2025-11-24 23:48:46] 2025-11-24 22:47:46,158 | INFO     | exeerrorcode: 0
[2025-11-24 23:48:46] 2025-11-24 22:47:46,158 | INFO     | exeerrordiag: 
[2025-11-24 23:48:46] 2025-11-24 22:47:46,158 | INFO     | exitcode: 0
[2025-11-24 23:48:46] 2025-11-24 22:47:46,158 | INFO     | exitmsg: OK
[2025-11-24 23:48:46] 2025-11-24 22:47:46,158 | INFO     | cpuconsumptiontime: 335839 s
[2025-11-24 23:48:46] 2025-11-24 22:47:46,158 | INFO     | nevents: 1000
[2025-11-24 23:48:46] 2025-11-24 22:47:46,158 | INFO     | neventsw: 0
[2025-11-24 23:48:46] 2025-11-24 22:47:46,158 | INFO     | pid: 28712
[2025-11-24 23:48:46] 2025-11-24 22:47:46,159 | INFO     | pgrp: 28712
[2025-11-24 23:48:46] 2025-11-24 22:47:46,159 | INFO     | corecount: 8
[2025-11-24 23:48:46] 2025-11-24 22:47:46,159 | INFO     | event service: False
[2025-11-24 23:48:46] 2025-11-24 22:47:46,159 | INFO     | sizes: {0: 2298635, 1: 2298834, 12: 2298834, 23: 2298862, 34: 2298890, 44: 2298918, 55: 2299074, 66: 2299102, 77: 2299130, 87: 2299186, 98: 2299214, 104: 2299784, 
[2025-11-24 23:48:46] 2025-11-24 22:47:46,159 | INFO     | --------------------------------------------------
[2025-11-24 23:48:46] 2025-11-24 22:47:46,159 | INFO     | 
[2025-11-24 23:48:46] 2025-11-24 22:47:46,159 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-24 23:48:46] 2025-11-24 22:47:46,546 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,546 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,546 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,546 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,546 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,547 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,547 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,547 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,547 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,547 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,547 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,547 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,547 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,548 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,548 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,548 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,548 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,548 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 23:48:46] 2025-11-24 22:47:46,548 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,548 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 23:48:46] 2025-11-24 22:47:46,549 | INFO     | job 6893857677 has completed (purged errors)
[2025-11-24 23:48:46] 2025-11-24 22:47:46,549 | INFO     | overall cleanup function is called
[2025-11-24 23:48:46] 2025-11-24 22:47:47,574 | INFO     | --- collectZombieJob: --- 10, [28712]
[2025-11-24 23:48:46] 2025-11-24 22:47:47,574 | INFO     | zombie collector waiting for pid 28712
[2025-11-24 23:48:46] 2025-11-24 22:47:47,575 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 23:48:46] 2025-11-24 22:47:47,575 | INFO     | collected zombie processes
[2025-11-24 23:48:46] 2025-11-24 22:47:47,575 | INFO     | will attempt to kill all subprocesses of pid=28712
[2025-11-24 23:48:46] 2025-11-24 22:47:47,684 | INFO     | process IDs to be killed: [28712] (in reverse order)
[2025-11-24 23:48:46] 2025-11-24 22:47:48,567 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 23:48:46] 2025-11-24 22:47:48,567 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 23:48:46] 2025-11-24 22:47:48,570 | INFO     | did not find any defunct processes belonging to 28712
[2025-11-24 23:48:46] 2025-11-24 22:47:48,573 | INFO     | did not find any defunct processes belonging to 28712
[2025-11-24 23:48:46] 2025-11-24 22:47:48,649 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 23:48:46] 2025-11-24 22:47:48,650 | INFO     | ready for new job
[2025-11-24 23:48:46] 2025-11-24 22:47:48,650 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 23:48:46] 2025-11-24 22:47:48,655 | INFO     | ***************************************
[2025-11-24 23:48:46] 2025-11-24 22:47:48,655 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 23:48:46] 2025-11-24 22:47:48,655 | INFO     | ***************************************
[2025-11-24 23:48:46] 2025-11-24 22:47:48,655 | INFO     | 
[2025-11-24 23:48:46] 2025-11-24 22:47:48,656 | INFO     | pilot is running in a VM
[2025-11-24 23:48:46] 2025-11-24 22:47:48,656 | INFO     | architecture information:
[2025-11-24 23:48:46] 2025-11-24 22:47:48,671 | INFO     | executing command: cat /etc/os-release
[2025-11-24 23:48:46] 2025-11-24 22:47:48,922 | INFO     | cat /etc/os-release:
[2025-11-24 23:48:46] NAME="CentOS Linux"
[2025-11-24 23:48:46] VERSION="7 (Core)"
[2025-11-24 23:48:46] ID="centos"
[2025-11-24 23:48:46] ID_LIKE="rhel fedora"
[2025-11-24 23:48:46] VERSION_ID="7"
[2025-11-24 23:48:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 23:48:46] ANSI_COLOR="0;31"
[2025-11-24 23:48:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 23:48:46] HOME_URL="https://www.centos.org/"
[2025-11-24 23:48:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 23:48:46] 
[2025-11-24 23:48:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 23:48:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 23:48:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 23:48:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 23:48:46] 
[2025-11-24 23:48:46] 2025-11-24 22:47:48,922 | INFO     | ***************************************
[2025-11-24 23:48:46] 2025-11-24 22:47:49,425 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-24 23:48:46] 2025-11-24 22:47:49,622 | INFO     | sufficient remaining disk space (495177433088 B)
[2025-11-24 23:48:46] 2025-11-24 22:47:49,622 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 23:48:46] 2025-11-24 22:47:49,622 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 23:48:46] 2025-11-24 22:47:49,622 | INFO     | update_server=False
[2025-11-24 23:48:46] 2025-11-24 22:47:49,622 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 23:48:46] 2025-11-24 22:47:49,623 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:48:46] 2025-11-24 22:47:49,623 | INFO     | aborting loop
[2025-11-24 23:48:46] 2025-11-24 22:47:49,657 | INFO     | all payload control threads have been joined
[2025-11-24 23:48:46] 2025-11-24 22:47:49,765 | INFO     | all data control threads have been joined
[2025-11-24 23:48:46] 2025-11-24 22:47:50,507 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 23:48:46] 2025-11-24 22:47:50,569 | INFO     | all job control threads have been joined
[2025-11-24 23:48:46] 2025-11-24 22:47:50,628 | INFO     | [job] retrieve thread has finished
[2025-11-24 23:48:46] 2025-11-24 22:47:50,629 | INFO     | [job] job monitor thread has finished
[2025-11-24 23:48:46] 2025-11-24 22:47:50,662 | INFO     | [payload] control thread has finished
[2025-11-24 23:48:46] 2025-11-24 22:47:50,675 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 23:48:46] 2025-11-24 22:47:50,771 | INFO     | [data] control thread has finished
[2025-11-24 23:48:46] 2025-11-24 22:47:50,965 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 23:48:46] 2025-11-24 22:47:51,060 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 23:48:46] 2025-11-24 22:47:51,172 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:48:46] 2025-11-24 22:47:51,249 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 23:48:46] 2025-11-24 22:47:51,575 | INFO     | [job] control thread has finished
[2025-11-24 23:48:46] 2025-11-24 22:47:51,578 | INFO     | [payload] failed_post thread has finished
[2025-11-24 23:48:46] 2025-11-24 22:47:51,658 | INFO     | [data] copytool_in thread has finished
[2025-11-24 23:48:46] 2025-11-24 22:47:52,003 | INFO     | [job] validate thread has finished
[2025-11-24 23:48:46] 2025-11-24 22:47:52,121 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 23:48:46] 2025-11-24 22:47:52,149 | INFO     | [payload] validate_post thread has finished
[2025-11-24 23:48:46] 2025-11-24 22:47:52,177 | INFO     | [job] queue monitor thread has finished
[2025-11-24 23:48:46] 2025-11-24 22:47:53,067 | INFO     | [data] copytool_out thread has finished
[2025-11-24 23:48:46] 2025-11-24 22:47:54,516 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 23:48:46] 2025-11-24 22:48:19,223 | INFO     | PID=22119 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 23:48:46] 2025-11-24 22:48:19,223 | INFO     | .. there are 9 such processes running
[2025-11-24 23:48:46] 2025-11-24 22:48:19,224 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 23:48:46] 2025-11-24 22:48:19,225 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 23:48:46] 2025-11-24 22:48:19,225 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 23:48:46] 2025-11-24 22:48:37,758 | INFO     | [monitor] cgroup control has ended
[2025-11-24 23:48:46] 2025-11-24 22:48:38,393 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140180595656512)>', '<ExcThread(monitor, started 140180300207872)>']
[2025-11-24 23:48:46] 2025-11-24 22:48:39,342 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 23:48:46] 2025-11-24 22:48:39,342 | INFO     | [monitor] control thread has ended
[2025-11-24 23:48:46] 2025-11-24 22:48:43,419 | INFO     | all workflow threads have been joined
[2025-11-24 23:48:46] 2025-11-24 22:48:43,419 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 23:48:46] 2025-11-24 22:48:43,420 | INFO     | traces error code: 0
[2025-11-24 23:48:46] 2025-11-24 22:48:43,420 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 23:48:46] 2025-11-24 22:48:43,681 [wrapper] ==== pilot stdout END ====
[2025-11-24 23:48:46] 2025-11-24 22:48:43,713 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 23:48:46] 2025-11-24 22:48:43,755 [wrapper] pilotpid: 22119
[2025-11-24 23:48:46] 2025-11-24 22:48:43,812 [wrapper] Pilot exit status: 0
[2025-11-24 23:48:46] 2025-11-24 22:48:44,210 [wrapper] pandaids: 6893857677
[2025-11-24 23:48:46] 2025-11-24 22:48:45,211 [wrapper] cleanup supervisor_pilot 11945 22120
[2025-11-24 23:48:46] 2025-11-24 22:48:45,271 [wrapper] Test setup, not cleaning
[2025-11-24 23:48:46] 2025-11-24 22:48:45,321 [wrapper] apfmon messages muted
[2025-11-24 23:48:46] 2025-11-24 22:48:45,348 [wrapper] ==== wrapper stdout END ====
[2025-11-24 23:48:46] 2025-11-24 22:48:45,385 [wrapper] ==== wrapper stderr END ====
[2025-11-24 23:48:46]  *** Error codes and diagnostics ***
[2025-11-24 23:48:46]     "exeErrorCode": 0,
[2025-11-24 23:48:46]     "exeErrorDiag": "",
[2025-11-24 23:48:46]     "pilotErrorCode": 0,
[2025-11-24 23:48:46]     "pilotErrorDiag": "",
[2025-11-24 23:48:46]  *** Listing of results directory ***
[2025-11-24 23:48:46] total 1327148
[2025-11-24 23:48:46] -rw-r--r--. 1 boinc boinc      5112 Nov 20 14:11 queuedata.json
[2025-11-24 23:48:46] -rwx------. 1 boinc boinc     36292 Nov 20 14:12 runpilot2-wrapper.sh
[2025-11-24 23:48:46] -rw-r--r--. 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-24 23:48:46] -rw-r--r--. 1 boinc boinc       100 Nov 24 04:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 23:48:46] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 04:05 run_atlas
[2025-11-24 23:48:46] -rw-r--r--. 1 boinc boinc       105 Nov 24 04:05 job.xml
[2025-11-24 23:48:46] -rw-r--r--. 1 boinc boinc      6392 Nov 24 04:05 init_data.xml
[2025-11-24 23:48:46] -rw-r--r--. 2 boinc boinc 409460005 Nov 24 04:05 EVNT.47493127._000498.pool.root.1
[2025-11-24 23:48:46] -rw-r--r--. 2 boinc boinc     15847 Nov 24 04:05 start_atlas.sh
[2025-11-24 23:48:46] drwxrwx--x. 2 boinc boinc        68 Nov 24 04:05 shared
[2025-11-24 23:48:46] -rw-r--r--. 2 boinc boinc    590098 Nov 24 04:05 input.tar.gz
[2025-11-24 23:48:46] -rw-r--r--. 1 boinc boinc         0 Nov 24 04:05 boinc_lockfile
[2025-11-24 23:48:46] -rw-r--r--. 1 boinc boinc      2785 Nov 24 04:06 pandaJob.out
[2025-11-24 23:48:46] -rw-------. 1 boinc boinc    989786 Nov 24 04:09 agis_schedconf.cvmfs.json
[2025-11-24 23:48:46] drwx------. 5 boinc boinc      4096 Nov 24 04:09 pilot3
[2025-11-24 23:48:46] -rw-r--r--. 1 boinc boinc       533 Nov 24 23:22 boinc_task_state.xml
[2025-11-24 23:48:46] -rw-------. 1 boinc boinc 922125190 Nov 24 23:45 HITS.47523449._004978.pool.root.1
[2025-11-24 23:48:46] -rw-------. 1 boinc boinc      1035 Nov 24 23:45 memory_monitor_summary.json
[2025-11-24 23:48:46] -rw-------. 1 boinc boinc   1516227 Nov 24 23:46 agis_ddmendpoints.agis.ALL.json
[2025-11-24 23:48:46] -rw-------. 1 boinc boinc   2315161 Nov 24 23:46 log.47523449._004978.job.log.tgz.1
[2025-11-24 23:48:46] -rw-------. 1 boinc boinc      7960 Nov 24 23:47 heartbeat.json
[2025-11-24 23:48:46] -rw-r--r--. 1 boinc boinc      8192 Nov 24 23:48 boinc_mmap_file
[2025-11-24 23:48:46] -rw-r--r--. 1 boinc boinc        29 Nov 24 23:48 wrapper_checkpoint.txt
[2025-11-24 23:48:46] -rw-------. 1 boinc boinc        95 Nov 24 23:48 pilot_heartbeat.json
[2025-11-24 23:48:46] -rw-------. 1 boinc boinc      4884 Nov 24 23:48 pilotlog.txt
[2025-11-24 23:48:46] -rw-------. 1 boinc boinc   9443770 Nov 24 23:48 log.47523449._004978.job.log.1
[2025-11-24 23:48:46] -rw-------. 1 boinc boinc       353 Nov 24 23:48 output.list
[2025-11-24 23:48:46] -rw-r--r--. 1 boinc boinc       620 Nov 24 23:48 runtime_log
[2025-11-24 23:48:46] -rw-------. 1 boinc boinc  11776000 Nov 24 23:48 result.tar.gz
[2025-11-24 23:48:46] -rw-r--r--. 1 boinc boinc      8817 Nov 24 23:48 runtime_log.err
[2025-11-24 23:48:46] -rw-------. 1 boinc boinc       661 Nov 24 23:48 r6WMDmNdJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWtHKDmbxBufm.diag
[2025-11-24 23:48:46] -rw-r--r--. 1 boinc boinc     21446 Nov 24 23:48 stderr.txt
[2025-11-24 23:48:46] HITS file was successfully produced:
[2025-11-24 23:48:46] -rw-------. 1 boinc boinc 922125190 Nov 24 23:45 shared/HITS.pool.root.1
[2025-11-24 23:48:46]  *** Contents of shared directory: ***
[2025-11-24 23:48:46] total 1312476
[2025-11-24 23:48:46] -rw-r--r--. 2 boinc boinc 409460005 Nov 24 04:05 ATLAS.root_0
[2025-11-24 23:48:46] -rw-r--r--. 2 boinc boinc     15847 Nov 24 04:05 start_atlas.sh
[2025-11-24 23:48:46] -rw-r--r--. 2 boinc boinc    590098 Nov 24 04:05 input.tar.gz
[2025-11-24 23:48:46] -rw-------. 1 boinc boinc 922125190 Nov 24 23:45 HITS.pool.root.1
[2025-11-24 23:48:46] -rw-------. 1 boinc boinc  11776000 Nov 24 23:48 result.tar.gz
23:48:48 (18363): run_atlas exited; CPU time 336155.892070
23:48:48 (18363): called boinc_finish(0)

</stderr_txt>
]]>

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