Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:10:00 (16679): wrapper (7.7.26015): starting
05:10:00 (16679): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 05:10:00] Arguments: --nthreads 8
[2025-11-24 05:10:00] Threads: 8
[2025-11-24 05:10:00] Checking for CVMFS
[2025-11-24 05:10:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 05:10:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 05:10:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 05:10:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 05:10:04] 2.11.2.0 7869 281842 140088 153231 0 85 18662512 25165824 4632 130560 2 136599499 99.885 73432877 2836 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 05:10:04] CVMFS is ok
[2025-11-24 05:10:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 05:10:04] Checking for apptainer binary...
[2025-11-24 05:10:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 05:10:04] Running /usr/bin/apptainer --version
[2025-11-24 05:10:04] apptainer version 1.3.2-1.el7
[2025-11-24 05:10:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 05:10:19] cg-vwn276.simple-grid.lan
[2025-11-24 05:10:19] apptainer works
[2025-11-24 05:10:19] Set ATHENA_PROC_NUMBER=8
[2025-11-24 05:10:19] Set ATHENA_CORE_NUMBER=8
[2025-11-24 05:10:19] Starting ATLAS job with PandaID=6893875913
[2025-11-24 05:10:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 02:54:51]  *** The last 200 lines of the pilot log: ***
[2025-11-25 02:54:51] 2025-11-25 01:53:48,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:54:51] 2025-11-25 01:53:48,559 | INFO     | time since job start (77964s) is within the limit (172800.0s)
[2025-11-25 02:54:51] 2025-11-25 01:53:50,567 | INFO     | time since job start (77966s) is within the limit (172800.0s)
[2025-11-25 02:54:51] 2025-11-25 01:53:50,906 | INFO     | monitor loop #5240: job 0:6893875913 is in state 'finished'
[2025-11-25 02:54:51] 2025-11-25 01:53:50,906 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:54:51] 2025-11-25 01:53:51,738 | INFO     | PID=20481 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 02:54:51] 2025-11-25 01:53:51,738 | INFO     | .. there are 2 such processes running
[2025-11-25 02:54:51] 2025-11-25 01:53:52,739 | INFO     | time since job start (77968s) is within the limit (172800.0s)
[2025-11-25 02:54:51] 2025-11-25 01:53:53,414 | INFO     | monitor loop #5241: job 0:6893875913 is in state 'finished'
[2025-11-25 02:54:51] 2025-11-25 01:53:53,414 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:54:51] 2025-11-25 01:53:54,747 | INFO     | time since job start (77970s) is within the limit (172800.0s)
[2025-11-25 02:54:51] 2025-11-25 01:53:55,919 | INFO     | monitor loop #5242: job 0:6893875913 is in state 'finished'
[2025-11-25 02:54:51] 2025-11-25 01:53:55,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:54:51] 2025-11-25 01:53:56,634 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 02:54:51] 2025-11-25 01:53:56,635 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 02:54:51] 2025-11-25 01:53:56,637 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6893875913/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 02:54:51] 2025-11-25 01:53:56,638 | INFO     | extracted standard info from prmon json
[2025-11-25 02:54:51] 2025-11-25 01:53:56,638 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 02:54:51] 2025-11-25 01:53:56,638 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 02:54:51] 2025-11-25 01:53:56,672 | INFO     | fitting pss+swap vs Time
[2025-11-25 02:54:51] 2025-11-25 01:53:56,674 | INFO     | sum of square deviations: 632177337641.6644
[2025-11-25 02:54:51] 2025-11-25 01:53:56,751 | INFO     | sum of deviations: 3019834842140.192
[2025-11-25 02:54:51] 2025-11-25 01:53:56,752 | INFO     | mean x: 1763996823.551262
[2025-11-25 02:54:51] 2025-11-25 01:53:56,752 | INFO     | mean y: 2847035.8509463724
[2025-11-25 02:54:51] 2025-11-25 01:53:56,752 | INFO     | intersect: -8423552887.083658
[2025-11-25 02:54:51] 2025-11-25 01:53:56,754 | INFO     | chi2: 25.792259146233103
[2025-11-25 02:54:51] 2025-11-25 01:53:56,756 | INFO     | sum of square deviations: 624728804536.1201
[2025-11-25 02:54:51] 2025-11-25 01:53:56,776 | INFO     | time since job start (77972s) is within the limit (172800.0s)
[2025-11-25 02:54:51] 2025-11-25 01:53:56,802 | INFO     | sum of deviations: 3435697338651.7017
[2025-11-25 02:54:51] 2025-11-25 01:53:56,802 | INFO     | mean x: 1763996671.0554235
[2025-11-25 02:54:51] 2025-11-25 01:53:56,803 | INFO     | mean y: 2855548.847189232
[2025-11-25 02:54:51] 2025-11-25 01:53:56,803 | INFO     | intersect: -9698247752.50567
[2025-11-25 02:54:51] 2025-11-25 01:53:56,804 | INFO     | chi2: 22.653214524256473
[2025-11-25 02:54:51] 2025-11-25 01:53:56,804 | INFO     | current chi2=22.653214524256473 (change=12.170491170158238 %)
[2025-11-25 02:54:51] 2025-11-25 01:53:56,805 | INFO     | right removable region: 1262
[2025-11-25 02:54:51] 2025-11-25 01:53:56,807 | INFO     | sum of square deviations: 624727991406.1206
[2025-11-25 02:54:51] 2025-11-25 01:53:56,869 | INFO     | sum of deviations: 2477358120697.5825
[2025-11-25 02:54:51] 2025-11-25 01:53:56,869 | INFO     | mean x: 1763996976.0554235
[2025-11-25 02:54:51] 2025-11-25 01:53:56,869 | INFO     | mean y: 2858141.1346001583
[2025-11-25 02:54:51] 2025-11-25 01:53:56,870 | INFO     | intersect: -6992269808.36049
[2025-11-25 02:54:51] 2025-11-25 01:53:56,871 | INFO     | chi2: 20.82010718451028
[2025-11-25 02:54:51] 2025-11-25 01:53:56,872 | INFO     | current chi2=20.82010718451028 (change=19.27769077354743 %)
[2025-11-25 02:54:51] 2025-11-25 01:53:56,872 | INFO     | left removable region: 10
[2025-11-25 02:54:51] 2025-11-25 01:53:56,874 | INFO     | sum of square deviations: 608546861407.7598
[2025-11-25 02:54:51] 2025-11-25 01:53:56,934 | INFO     | sum of deviations: 2514025059144.522
[2025-11-25 02:54:51] 2025-11-25 01:53:56,934 | INFO     | mean x: 1763996945.5646966
[2025-11-25 02:54:51] 2025-11-25 01:53:56,934 | INFO     | mean y: 2878789.3330670926
[2025-11-25 02:54:51] 2025-11-25 01:53:56,935 | INFO     | intersect: -7284534566.386351
[2025-11-25 02:54:51] 2025-11-25 01:53:56,936 | INFO     | chi2: 12.988335768920912
[2025-11-25 02:54:51] 2025-11-25 01:53:56,937 | INFO     | current memory leak: 4.13 B/s (using 1252 data points, chi2=12.99)
[2025-11-25 02:54:51] 2025-11-25 01:53:56,938 | INFO     | could have reported an average CPU frequency of 1999 MHz (43 samples)
[2025-11-25 02:54:51] 2025-11-25 01:53:56,939 | INFO     | ..............................
[2025-11-25 02:54:51] 2025-11-25 01:53:56,939 | INFO     | . Timing measurements:
[2025-11-25 02:54:51] 2025-11-25 01:53:56,939 | INFO     | . get job = 0 s
[2025-11-25 02:54:51] 2025-11-25 01:53:56,939 | INFO     | . initial setup = 5 s
[2025-11-25 02:54:51] 2025-11-25 01:53:56,939 | INFO     | . payload setup = 159 s
[2025-11-25 02:54:51] 2025-11-25 01:53:56,939 | INFO     | . stage-in = 0 s
[2025-11-25 02:54:51] 2025-11-25 01:53:56,939 | INFO     | . payload execution = 77505 s
[2025-11-25 02:54:51] 2025-11-25 01:53:56,939 | INFO     | . stage-out = 10 s
[2025-11-25 02:54:51] 2025-11-25 01:53:56,940 | INFO     | . log creation = 2 s
[2025-11-25 02:54:51] 2025-11-25 01:53:56,940 | INFO     | ..............................
[2025-11-25 02:54:51] 2025-11-25 01:53:57,056 | INFO     | 
[2025-11-25 02:54:51] 2025-11-25 01:53:57,056 | INFO     | job summary report
[2025-11-25 02:54:51] 2025-11-25 01:53:57,057 | INFO     | --------------------------------------------------
[2025-11-25 02:54:51] 2025-11-25 01:53:57,057 | INFO     | PanDA job id: 6893875913
[2025-11-25 02:54:51] 2025-11-25 01:53:57,057 | INFO     | task id: 47523449
[2025-11-25 02:54:51] 2025-11-25 01:53:57,057 | INFO     | errors: (none)
[2025-11-25 02:54:51] 2025-11-25 01:53:57,057 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 02:54:51] 2025-11-25 01:53:57,057 | INFO     | pilot state: finished 
[2025-11-25 02:54:51] 2025-11-25 01:53:57,057 | INFO     | transexitcode: 0
[2025-11-25 02:54:51] 2025-11-25 01:53:57,057 | INFO     | exeerrorcode: 0
[2025-11-25 02:54:51] 2025-11-25 01:53:57,057 | INFO     | exeerrordiag: 
[2025-11-25 02:54:51] 2025-11-25 01:53:57,057 | INFO     | exitcode: 0
[2025-11-25 02:54:51] 2025-11-25 01:53:57,057 | INFO     | exitmsg: OK
[2025-11-25 02:54:51] 2025-11-25 01:53:57,057 | INFO     | cpuconsumptiontime: 337059 s
[2025-11-25 02:54:51] 2025-11-25 01:53:57,057 | INFO     | nevents: 1000
[2025-11-25 02:54:51] 2025-11-25 01:53:57,057 | INFO     | neventsw: 0
[2025-11-25 02:54:51] 2025-11-25 01:53:57,057 | INFO     | pid: 27078
[2025-11-25 02:54:51] 2025-11-25 01:53:57,058 | INFO     | pgrp: 27078
[2025-11-25 02:54:51] 2025-11-25 01:53:57,058 | INFO     | corecount: 8
[2025-11-25 02:54:51] 2025-11-25 01:53:57,058 | INFO     | event service: False
[2025-11-25 02:54:51] 2025-11-25 01:53:57,058 | INFO     | sizes: {0: 2297928, 1: 2298613, 2: 2298812, 13: 2298812, 23: 2298868, 34: 2298896, 45: 2299052, 56: 2299080, 66: 2299108, 77: 2299136, 88: 2299192, 93: 2299762, 98
[2025-11-25 02:54:51] 2025-11-25 01:53:57,058 | INFO     | --------------------------------------------------
[2025-11-25 02:54:51] 2025-11-25 01:53:57,058 | INFO     | 
[2025-11-25 02:54:51] 2025-11-25 01:53:57,058 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-25 02:54:51] 2025-11-25 01:53:57,697 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,698 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,698 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,698 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,698 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,698 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,698 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,698 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,698 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,698 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,699 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,699 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,699 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,699 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,699 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,699 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,699 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,699 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 02:54:51] 2025-11-25 01:53:57,699 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,700 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 02:54:51] 2025-11-25 01:53:57,700 | INFO     | job 6893875913 has completed (purged errors)
[2025-11-25 02:54:51] 2025-11-25 01:53:57,700 | INFO     | overall cleanup function is called
[2025-11-25 02:54:51] 2025-11-25 01:53:58,721 | INFO     | --- collectZombieJob: --- 10, [27078]
[2025-11-25 02:54:51] 2025-11-25 01:53:58,721 | INFO     | zombie collector waiting for pid 27078
[2025-11-25 02:54:51] 2025-11-25 01:53:58,721 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 02:54:51] 2025-11-25 01:53:58,721 | INFO     | collected zombie processes
[2025-11-25 02:54:51] 2025-11-25 01:53:58,721 | INFO     | will attempt to kill all subprocesses of pid=27078
[2025-11-25 02:54:51] 2025-11-25 01:53:58,824 | INFO     | process IDs to be killed: [27078] (in reverse order)
[2025-11-25 02:54:51] 2025-11-25 01:53:59,617 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 02:54:51] 2025-11-25 01:53:59,617 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 02:54:51] 2025-11-25 01:53:59,619 | INFO     | did not find any defunct processes belonging to 27078
[2025-11-25 02:54:51] 2025-11-25 01:53:59,621 | INFO     | did not find any defunct processes belonging to 27078
[2025-11-25 02:54:51] 2025-11-25 01:53:59,665 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 02:54:51] 2025-11-25 01:53:59,665 | INFO     | ready for new job
[2025-11-25 02:54:51] 2025-11-25 01:53:59,665 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 02:54:51] 2025-11-25 01:53:59,671 | INFO     | ***************************************
[2025-11-25 02:54:51] 2025-11-25 01:53:59,671 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 02:54:51] 2025-11-25 01:53:59,671 | INFO     | ***************************************
[2025-11-25 02:54:51] 2025-11-25 01:53:59,672 | INFO     | 
[2025-11-25 02:54:51] 2025-11-25 01:53:59,672 | INFO     | pilot is running in a VM
[2025-11-25 02:54:51] 2025-11-25 01:53:59,672 | INFO     | architecture information:
[2025-11-25 02:54:51] 2025-11-25 01:53:59,686 | INFO     | executing command: cat /etc/os-release
[2025-11-25 02:54:51] 2025-11-25 01:54:00,002 | INFO     | cat /etc/os-release:
[2025-11-25 02:54:51] NAME="CentOS Linux"
[2025-11-25 02:54:51] VERSION="7 (Core)"
[2025-11-25 02:54:51] ID="centos"
[2025-11-25 02:54:51] ID_LIKE="rhel fedora"
[2025-11-25 02:54:51] VERSION_ID="7"
[2025-11-25 02:54:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 02:54:51] ANSI_COLOR="0;31"
[2025-11-25 02:54:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 02:54:51] HOME_URL="https://www.centos.org/"
[2025-11-25 02:54:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 02:54:51] 
[2025-11-25 02:54:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 02:54:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 02:54:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 02:54:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 02:54:51] 
[2025-11-25 02:54:51] 2025-11-25 01:54:00,002 | INFO     | ***************************************
[2025-11-25 02:54:51] 2025-11-25 01:54:00,506 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-25 02:54:51] 2025-11-25 01:54:00,791 | INFO     | sufficient remaining disk space (493072941056 B)
[2025-11-25 02:54:51] 2025-11-25 01:54:00,791 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 02:54:51] 2025-11-25 01:54:00,791 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 02:54:51] 2025-11-25 01:54:00,791 | INFO     | update_server=False
[2025-11-25 02:54:51] 2025-11-25 01:54:00,792 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 02:54:51] 2025-11-25 01:54:00,796 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 02:54:51] 2025-11-25 01:54:00,804 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 02:54:51] 2025-11-25 01:54:00,945 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 02:54:51] 2025-11-25 01:54:00,945 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 02:54:51] 2025-11-25 01:54:00,945 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:54:51] 2025-11-25 01:54:00,945 | INFO     | will abort loop
[2025-11-25 02:54:51] 2025-11-25 01:54:00,985 | INFO     | all payload control threads have been joined
[2025-11-25 02:54:51] 2025-11-25 01:54:01,002 | INFO     | all data control threads have been joined
[2025-11-25 02:54:51] 2025-11-25 01:54:01,798 | INFO     | [job] retrieve thread has finished
[2025-11-25 02:54:51] 2025-11-25 01:54:01,848 | INFO     | [data] copytool_in thread has finished
[2025-11-25 02:54:51] 2025-11-25 01:54:01,849 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 02:54:51] 2025-11-25 01:54:01,911 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 02:54:51] 2025-11-25 01:54:01,951 | INFO     | [job] job monitor thread has finished
[2025-11-25 02:54:51] 2025-11-25 01:54:01,991 | INFO     | [payload] control thread has finished
[2025-11-25 02:54:51] 2025-11-25 01:54:02,008 | INFO     | [data] control thread has finished
[2025-11-25 02:54:51] 2025-11-25 01:54:02,012 | INFO     | [job] validate thread has finished
[2025-11-25 02:54:51] 2025-11-25 01:54:02,071 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:54:51] 2025-11-25 01:54:02,405 | INFO     | all job control threads have been joined
[2025-11-25 02:54:51] 2025-11-25 01:54:02,521 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 02:54:51] 2025-11-25 01:54:02,811 | INFO     | [data] copytool_out thread has finished
[2025-11-25 02:54:51] 2025-11-25 01:54:02,906 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 02:54:51] 2025-11-25 01:54:03,077 | INFO     | [job] queue monitor thread has finished
[2025-11-25 02:54:51] 2025-11-25 01:54:03,095 | INFO     | [payload] failed_post thread has finished
[2025-11-25 02:54:51] 2025-11-25 01:54:03,327 | INFO     | [payload] validate_post thread has finished
[2025-11-25 02:54:51] 2025-11-25 01:54:03,411 | INFO     | [job] control thread has finished
[2025-11-25 02:54:51] 2025-11-25 01:54:04,805 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 02:54:51] 2025-11-25 01:54:29,943 | INFO     | PID=20481 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 02:54:51] 2025-11-25 01:54:29,943 | INFO     | .. there are 2 such processes running
[2025-11-25 02:54:51] 2025-11-25 01:54:29,944 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 02:54:51] 2025-11-25 01:54:29,944 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 02:54:51] 2025-11-25 01:54:29,944 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 02:54:51] 2025-11-25 01:54:39,923 | INFO     | [monitor] cgroup control has ended
[2025-11-25 02:54:51] 2025-11-25 01:54:40,404 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139858688096064)>', '<ExcThread(monitor, started 139858378987264)>']
[2025-11-25 02:54:51] 2025-11-25 01:54:41,011 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 02:54:51] 2025-11-25 01:54:41,011 | INFO     | [monitor] control thread has ended
[2025-11-25 02:54:51] 2025-11-25 01:54:45,430 | INFO     | all workflow threads have been joined
[2025-11-25 02:54:51] 2025-11-25 01:54:45,430 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 02:54:51] 2025-11-25 01:54:45,430 | INFO     | traces error code: 0
[2025-11-25 02:54:51] 2025-11-25 01:54:45,430 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 02:54:51] 2025-11-25 01:54:45,873 [wrapper] ==== pilot stdout END ====
[2025-11-25 02:54:51] 2025-11-25 01:54:45,993 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 02:54:51] 2025-11-25 01:54:46,098 [wrapper] pilotpid: 20481
[2025-11-25 02:54:51] 2025-11-25 01:54:46,205 [wrapper] Pilot exit status: 0
[2025-11-25 02:54:51] 2025-11-25 01:54:46,522 [wrapper] pandaids: 6893875913
[2025-11-25 02:54:51] 2025-11-25 01:54:47,413 [wrapper] cleanup supervisor_pilot 22558 20482
[2025-11-25 02:54:51] 2025-11-25 01:54:47,533 [wrapper] Test setup, not cleaning
[2025-11-25 02:54:51] 2025-11-25 01:54:47,638 [wrapper] apfmon messages muted
[2025-11-25 02:54:51] 2025-11-25 01:54:47,736 [wrapper] ==== wrapper stdout END ====
[2025-11-25 02:54:51] 2025-11-25 01:54:47,840 [wrapper] ==== wrapper stderr END ====
[2025-11-25 02:54:51]  *** Error codes and diagnostics ***
[2025-11-25 02:54:51]     "exeErrorCode": 0,
[2025-11-25 02:54:51]     "exeErrorDiag": "",
[2025-11-25 02:54:51]     "pilotErrorCode": 0,
[2025-11-25 02:54:51]     "pilotErrorDiag": "",
[2025-11-25 02:54:51]  *** Listing of results directory ***
[2025-11-25 02:54:51] total 1329804
[2025-11-25 02:54:51] -rw-r--r--. 1 boinc boinc    576529 Nov 20 17:47 pilot3.tar.gz
[2025-11-25 02:54:51] -rwx------. 1 boinc boinc     36292 Nov 20 17:53 runpilot2-wrapper.sh
[2025-11-25 02:54:51] -rw-r--r--. 1 boinc boinc      5112 Nov 20 17:53 queuedata.json
[2025-11-25 02:54:51] -rw-r--r--. 1 boinc boinc       100 Nov 24 05:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 02:54:51] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 05:10 run_atlas
[2025-11-25 02:54:51] -rw-r--r--. 1 boinc boinc       105 Nov 24 05:10 job.xml
[2025-11-25 02:54:51] -rw-r--r--. 2 boinc boinc 410748808 Nov 24 05:10 EVNT.47493127._000750.pool.root.1
[2025-11-25 02:54:51] -rw-r--r--. 2 boinc boinc     15847 Nov 24 05:10 start_atlas.sh
[2025-11-25 02:54:51] drwxrwx--x. 2 boinc boinc        68 Nov 24 05:10 shared
[2025-11-25 02:54:51] -rw-r--r--. 2 boinc boinc    590098 Nov 24 05:10 input.tar.gz
[2025-11-25 02:54:51] -rw-r--r--. 1 boinc boinc      6390 Nov 24 05:10 init_data.xml
[2025-11-25 02:54:51] -rw-r--r--. 1 boinc boinc         0 Nov 24 05:10 boinc_lockfile
[2025-11-25 02:54:51] -rw-r--r--. 1 boinc boinc      2785 Nov 24 05:10 pandaJob.out
[2025-11-25 02:54:51] -rw-------. 1 boinc boinc    989786 Nov 24 05:14 agis_schedconf.cvmfs.json
[2025-11-25 02:54:51] drwx------. 5 boinc boinc      4096 Nov 24 05:14 pilot3
[2025-11-25 02:54:51] -rw-r--r--. 1 boinc boinc       533 Nov 25 02:29 boinc_task_state.xml
[2025-11-25 02:54:51] -rw-------. 1 boinc boinc 921588663 Nov 25 02:50 HITS.47523449._007495.pool.root.1
[2025-11-25 02:54:51] -rw-------. 1 boinc boinc      1033 Nov 25 02:52 memory_monitor_summary.json
[2025-11-25 02:54:51] -rw-------. 1 boinc boinc   1516227 Nov 25 02:52 agis_ddmendpoints.agis.ALL.json
[2025-11-25 02:54:51] -rw-------. 1 boinc boinc   2380165 Nov 25 02:52 log.47523449._007495.job.log.tgz.1
[2025-11-25 02:54:51] -rw-------. 1 boinc boinc      7960 Nov 25 02:53 heartbeat.json
[2025-11-25 02:54:51] -rw-------. 1 boinc boinc        96 Nov 25 02:54 pilot_heartbeat.json
[2025-11-25 02:54:51] -rw-r--r--. 1 boinc boinc      8192 Nov 25 02:54 boinc_mmap_file
[2025-11-25 02:54:51] -rw-r--r--. 1 boinc boinc        29 Nov 25 02:54 wrapper_checkpoint.txt
[2025-11-25 02:54:51] -rw-------. 1 boinc boinc      5070 Nov 25 02:54 pilotlog.txt
[2025-11-25 02:54:51] -rw-------. 1 boinc boinc  10359015 Nov 25 02:54 log.47523449._007495.job.log.1
[2025-11-25 02:54:51] -rw-------. 1 boinc boinc       353 Nov 25 02:54 output.list
[2025-11-25 02:54:51] -rw-r--r--. 1 boinc boinc       620 Nov 25 02:54 runtime_log
[2025-11-25 02:54:51] -rw-------. 1 boinc boinc  12759040 Nov 25 02:54 result.tar.gz
[2025-11-25 02:54:51] -rw-r--r--. 1 boinc boinc      8817 Nov 25 02:54 runtime_log.err
[2025-11-25 02:54:51] -rw-------. 1 boinc boinc       662 Nov 25 02:54 dIBODmn5Mg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrKIKDmpPdtLn.diag
[2025-11-25 02:54:51] -rw-r--r--. 1 boinc boinc     21492 Nov 25 02:54 stderr.txt
[2025-11-25 02:54:51] HITS file was successfully produced:
[2025-11-25 02:54:51] -rw-------. 1 boinc boinc 921588663 Nov 25 02:50 shared/HITS.pool.root.1
[2025-11-25 02:54:51]  *** Contents of shared directory: ***
[2025-11-25 02:54:51] total 1314172
[2025-11-25 02:54:51] -rw-r--r--. 2 boinc boinc 410748808 Nov 24 05:10 ATLAS.root_0
[2025-11-25 02:54:51] -rw-r--r--. 2 boinc boinc     15847 Nov 24 05:10 start_atlas.sh
[2025-11-25 02:54:51] -rw-r--r--. 2 boinc boinc    590098 Nov 24 05:10 input.tar.gz
[2025-11-25 02:54:51] -rw-------. 1 boinc boinc 921588663 Nov 25 02:50 HITS.pool.root.1
[2025-11-25 02:54:51] -rw-------. 1 boinc boinc  12759040 Nov 25 02:54 result.tar.gz
02:54:52 (16679): run_atlas exited; CPU time 337276.717879
02:54:52 (16679): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN