Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
21:04:01 (107006): wrapper (7.7.26015): starting
21:04:01 (107006): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 21:04:01] Arguments: --nthreads 8
[2025-11-20 21:04:01] Threads: 8
[2025-11-20 21:04:01] Checking for CVMFS
[2025-11-20 21:04:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 21:04:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 21:04:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 21:04:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 21:04:02] 2.13.3.0 4524 61 51832 153108 2 90 1181176 4096001 4441 130560 0 1708904 99.645 500204 875 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-11-20 21:04:02] CVMFS is ok
[2025-11-20 21:04:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 21:04:02] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-20 21:04:02] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-20 21:04:02] Further information can be found at the LHC@home message board.
[2025-11-20 21:04:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 21:04:02] Checking for apptainer binary...
[2025-11-20 21:04:02] apptainer is not installed, using version from CVMFS
[2025-11-20 21:04:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 21:04:02] 7950x-linux
[2025-11-20 21:04:02] apptainer works
[2025-11-20 21:04:02] Set ATHENA_PROC_NUMBER=8
[2025-11-20 21:04:02] Set ATHENA_CORE_NUMBER=8
[2025-11-20 21:04:02] Starting ATLAS job with PandaID=6893876506
[2025-11-20 21:04:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc501/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 10:30:40]  *** The last 200 lines of the pilot log: ***
[2025-11-21 10:30:40] 2025-11-21 18:29:51,205 | INFO     | time since job start (48338s) is within the limit (172800.0s)
[2025-11-21 10:30:40] 2025-11-21 18:29:52,037 | INFO     | monitor loop #3541: job 0:6893876506 is in state 'finished'
[2025-11-21 10:30:40] 2025-11-21 18:29:52,038 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 10:30:40] 2025-11-21 18:29:52,748 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 10:30:40] 2025-11-21 18:29:52,750 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3999.8562187499997
[2025-11-21 10:30:40] 2025-11-21 18:29:52,754 | INFO     | using path: /var/lib/multiboinc/boinc501/slots/2/PanDA_Pilot-6893876506/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 10:30:40] 2025-11-21 18:29:52,755 | INFO     | extracted standard info from prmon json
[2025-11-21 10:30:40] 2025-11-21 18:29:52,755 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 10:30:40] 2025-11-21 18:29:52,755 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 10:30:40] 2025-11-21 18:29:52,762 | INFO     | fitting pss+swap vs Time
[2025-11-21 10:30:40] 2025-11-21 18:29:52,762 | INFO     | sum of square deviations: 154047011118.0
[2025-11-21 10:30:40] 2025-11-21 18:29:52,774 | INFO     | sum of deviations: 1063577422145.0002
[2025-11-21 10:30:40] 2025-11-21 18:29:52,774 | INFO     | mean x: 1763725604.5
[2025-11-21 10:30:40] 2025-11-21 18:29:52,774 | INFO     | mean y: 2874940.707070707
[2025-11-21 10:30:40] 2025-11-21 18:29:52,774 | INFO     | intersect: -12174308622.87622
[2025-11-21 10:30:40] 2025-11-21 18:29:52,775 | INFO     | chi2: 4.698781052079671
[2025-11-21 10:30:40] 2025-11-21 18:29:52,775 | INFO     | sum of square deviations: 151147831178.0
[2025-11-21 10:30:40] 2025-11-21 18:29:52,783 | INFO     | sum of deviations: 1267594788534.999
[2025-11-21 10:30:40] 2025-11-21 18:29:52,783 | INFO     | mean x: 1763725452.0
[2025-11-21 10:30:40] 2025-11-21 18:29:52,783 | INFO     | mean y: 2885660.383735705
[2025-11-21 10:30:40] 2025-11-21 18:29:52,783 | INFO     | intersect: -14788522022.660458
[2025-11-21 10:30:40] 2025-11-21 18:29:52,784 | INFO     | chi2: 2.614686301509181
[2025-11-21 10:30:40] 2025-11-21 18:29:52,784 | INFO     | current chi2=2.614686301509181 (change=44.35394472462328 %)
[2025-11-21 10:30:40] 2025-11-21 18:29:52,784 | INFO     | sum of square deviations: 148285256575.5
[2025-11-21 10:30:40] 2025-11-21 18:29:52,797 | INFO     | sum of deviations: 1252792754112.9998
[2025-11-21 10:30:40] 2025-11-21 18:29:52,798 | INFO     | mean x: 1763725299.5
[2025-11-21 10:30:40] 2025-11-21 18:29:52,798 | INFO     | mean y: 2884871.841432225
[2025-11-21 10:30:40] 2025-11-21 18:29:52,798 | INFO     | intersect: -14898004983.88312
[2025-11-21 10:30:40] 2025-11-21 18:29:52,798 | INFO     | chi2: 2.6125629252989433
[2025-11-21 10:30:40] 2025-11-21 18:29:52,798 | INFO     | current chi2=2.6125629252989433 (change=0.08120959707526391 %)
[2025-11-21 10:30:40] 2025-11-21 18:29:52,798 | INFO     | right removable region: 781
[2025-11-21 10:30:40] 2025-11-21 18:29:52,799 | INFO     | sum of square deviations: 151147831178.0
[2025-11-21 10:30:40] 2025-11-21 18:29:52,811 | INFO     | sum of deviations: 835528288172.0001
[2025-11-21 10:30:40] 2025-11-21 18:29:52,811 | INFO     | mean x: 1763725757.0
[2025-11-21 10:30:40] 2025-11-21 18:29:52,811 | INFO     | mean y: 2886920.405336722
[2025-11-21 10:30:40] 2025-11-21 18:29:52,811 | INFO     | intersect: -9746791596.752031
[2025-11-21 10:30:40] 2025-11-21 18:29:52,811 | INFO     | chi2: 2.295222964087457
[2025-11-21 10:30:40] 2025-11-21 18:29:52,811 | INFO     | current chi2=2.295222964087457 (change=51.15280029760919 %)
[2025-11-21 10:30:40] 2025-11-21 18:29:52,812 | INFO     | sum of square deviations: 148285256575.5
[2025-11-21 10:30:40] 2025-11-21 18:29:52,819 | INFO     | sum of deviations: 782590706117.9996
[2025-11-21 10:30:40] 2025-11-21 18:29:52,819 | INFO     | mean x: 1763725909.5
[2025-11-21 10:30:40] 2025-11-21 18:29:52,819 | INFO     | mean y: 2889739.2071611253
[2025-11-21 10:30:40] 2025-11-21 18:29:52,819 | INFO     | intersect: -9305355306.796072
[2025-11-21 10:30:40] 2025-11-21 18:29:52,819 | INFO     | chi2: 2.2346257292835023
[2025-11-21 10:30:40] 2025-11-21 18:29:52,819 | INFO     | current chi2=2.2346257292835023 (change=2.64014589223348 %)
[2025-11-21 10:30:40] 2025-11-21 18:29:52,819 | INFO     | left removable region: 20
[2025-11-21 10:30:40] 2025-11-21 18:29:52,822 | INFO     | sum of square deviations: 136656925060.0
[2025-11-21 10:30:40] 2025-11-21 18:29:52,831 | INFO     | sum of deviations: 891769322542.0004
[2025-11-21 10:30:40] 2025-11-21 18:29:52,831 | INFO     | mean x: 1763725879.0
[2025-11-21 10:30:40] 2025-11-21 18:29:52,831 | INFO     | mean y: 2904242.8449408673
[2025-11-21 10:30:40] 2025-11-21 18:29:52,831 | INFO     | intersect: -11506476870.297049
[2025-11-21 10:30:40] 2025-11-21 18:29:52,832 | INFO     | chi2: 0.09027526581919719
[2025-11-21 10:30:40] 2025-11-21 18:29:52,832 | INFO     | current memory leak: 6.53 B/s (using 761 data points, chi2=0.09)
[2025-11-21 10:30:40] 2025-11-21 18:29:52,832 | INFO     | could have reported an average CPU frequency of 3999 MHz (30 samples)
[2025-11-21 10:30:40] 2025-11-21 18:29:52,832 | INFO     | ..............................
[2025-11-21 10:30:40] 2025-11-21 18:29:52,833 | INFO     | . Timing measurements:
[2025-11-21 10:30:40] 2025-11-21 18:29:52,833 | INFO     | . get job = 0 s
[2025-11-21 10:30:40] 2025-11-21 18:29:52,833 | INFO     | . initial setup = 3 s
[2025-11-21 10:30:40] 2025-11-21 18:29:52,833 | INFO     | . payload setup = 5 s
[2025-11-21 10:30:40] 2025-11-21 18:29:52,833 | INFO     | . stage-in = 0 s
[2025-11-21 10:30:40] 2025-11-21 18:29:52,833 | INFO     | . payload execution = 48299 s
[2025-11-21 10:30:40] 2025-11-21 18:29:52,833 | INFO     | . stage-out = 3 s
[2025-11-21 10:30:40] 2025-11-21 18:29:52,833 | INFO     | . log creation = 0 s
[2025-11-21 10:30:40] 2025-11-21 18:29:52,833 | INFO     | ..............................
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | 
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | job summary report
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | --------------------------------------------------
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | PanDA job id: 6893876506
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | task id: 47523449
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | errors: (none)
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | pilot state: finished 
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | transexitcode: 0
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | exeerrorcode: 0
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | exeerrordiag: 
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | exitcode: 0
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | exitmsg: OK
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | cpuconsumptiontime: 133081 s
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | nevents: 1000
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | neventsw: 0
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | pid: 117759
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | pgrp: 117759
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | corecount: 8
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | event service: False
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | sizes: {0: 2298770, 5: 2299032, 11: 2299088, 48308: 2345962, 48309: 2345961, 48313: 2355039, 48316: 2355223, 48324: 2355469}
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | --------------------------------------------------
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | 
[2025-11-21 10:30:40] 2025-11-21 18:29:52,885 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc501/slots/2
[2025-11-21 10:30:40] 2025-11-21 18:29:52,911 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | job 6893876506 has completed (purged errors)
[2025-11-21 10:30:40] 2025-11-21 18:29:52,912 | INFO     | overall cleanup function is called
[2025-11-21 10:30:40] 2025-11-21 18:29:53,926 | INFO     | --- collectZombieJob: --- 10, [117759]
[2025-11-21 10:30:40] 2025-11-21 18:29:53,927 | INFO     | zombie collector waiting for pid 117759
[2025-11-21 10:30:40] 2025-11-21 18:29:53,927 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 10:30:40] 2025-11-21 18:29:53,927 | INFO     | collected zombie processes
[2025-11-21 10:30:40] 2025-11-21 18:29:53,927 | INFO     | will attempt to kill all subprocesses of pid=117759
[2025-11-21 10:30:40] 2025-11-21 18:29:54,223 | INFO     | process IDs to be killed: [117759] (in reverse order)
[2025-11-21 10:30:40] 2025-11-21 18:29:54,359 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 10:30:40] 2025-11-21 18:29:54,359 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 10:30:40] 2025-11-21 18:29:54,364 | INFO     | did not find any defunct processes belonging to 117759
[2025-11-21 10:30:40] 2025-11-21 18:29:54,369 | INFO     | did not find any defunct processes belonging to 117759
[2025-11-21 10:30:40] 2025-11-21 18:29:54,373 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 10:30:40] 2025-11-21 18:29:54,373 | INFO     | ready for new job
[2025-11-21 10:30:40] 2025-11-21 18:29:54,373 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 10:30:40] 2025-11-21 18:29:54,376 | INFO     | ***************************************
[2025-11-21 10:30:40] 2025-11-21 18:29:54,376 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 10:30:40] 2025-11-21 18:29:54,376 | INFO     | ***************************************
[2025-11-21 10:30:40] 2025-11-21 18:29:54,376 | INFO     | 
[2025-11-21 10:30:40] 2025-11-21 18:29:54,377 | INFO     | architecture information:
[2025-11-21 10:30:40] 2025-11-21 18:29:54,378 | INFO     | executing command: cat /etc/os-release
[2025-11-21 10:30:40] 2025-11-21 18:29:54,397 | INFO     | cat /etc/os-release:
[2025-11-21 10:30:40] NAME="CentOS Linux"
[2025-11-21 10:30:40] VERSION="7 (Core)"
[2025-11-21 10:30:40] ID="centos"
[2025-11-21 10:30:40] ID_LIKE="rhel fedora"
[2025-11-21 10:30:40] VERSION_ID="7"
[2025-11-21 10:30:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 10:30:40] ANSI_COLOR="0;31"
[2025-11-21 10:30:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 10:30:40] HOME_URL="https://www.centos.org/"
[2025-11-21 10:30:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 10:30:40] 
[2025-11-21 10:30:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 10:30:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 10:30:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 10:30:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 10:30:40] 
[2025-11-21 10:30:40] 2025-11-21 18:29:54,397 | INFO     | ***************************************
[2025-11-21 10:30:40] 2025-11-21 18:29:54,900 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc501/slots/2
[2025-11-21 10:30:40] 2025-11-21 18:29:54,918 | INFO     | sufficient remaining disk space (198419939328 B)
[2025-11-21 10:30:40] 2025-11-21 18:29:54,918 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 10:30:40] 2025-11-21 18:29:54,918 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 10:30:40] 2025-11-21 18:29:54,918 | INFO     | update_server=False
[2025-11-21 10:30:40] 2025-11-21 18:29:54,918 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 10:30:40] 2025-11-21 18:29:54,961 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 10:30:40] 2025-11-21 18:29:55,004 | INFO     | all job control threads have been joined
[2025-11-21 10:30:40] 2025-11-21 18:29:55,015 | INFO     | all data control threads have been joined
[2025-11-21 10:30:40] 2025-11-21 18:29:55,545 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 10:30:40] 2025-11-21 18:29:55,546 | INFO     | aborting loop
[2025-11-21 10:30:40] 2025-11-21 18:29:55,797 | INFO     | all payload control threads have been joined
[2025-11-21 10:30:40] 2025-11-21 18:29:55,805 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 10:30:40] 2025-11-21 18:29:55,922 | INFO     | [job] retrieve thread has finished
[2025-11-21 10:30:40] 2025-11-21 18:29:56,009 | INFO     | [job] control thread has finished
[2025-11-21 10:30:40] 2025-11-21 18:29:56,020 | INFO     | [data] control thread has finished
[2025-11-21 10:30:40] 2025-11-21 18:29:56,032 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 10:30:40] 2025-11-21 18:29:56,067 | INFO     | [payload] validate_post thread has finished
[2025-11-21 10:30:40] 2025-11-21 18:29:56,401 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 10:30:40] 2025-11-21 18:29:56,540 | INFO     | [payload] failed_post thread has finished
[2025-11-21 10:30:40] 2025-11-21 18:29:56,550 | INFO     | [job] job monitor thread has finished
[2025-11-21 10:30:40] 2025-11-21 18:29:56,802 | INFO     | [payload] control thread has finished
[2025-11-21 10:30:40] 2025-11-21 18:29:56,946 | INFO     | [data] copytool_in thread has finished
[2025-11-21 10:30:40] 2025-11-21 18:29:56,966 | INFO     | [data] copytool_out thread has finished
[2025-11-21 10:30:40] 2025-11-21 18:29:57,148 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 10:30:40] 2025-11-21 18:29:57,164 | INFO     | [job] validate thread has finished
[2025-11-21 10:30:40] 2025-11-21 18:29:57,190 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 10:30:40] 2025-11-21 18:29:57,894 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 10:30:40] 2025-11-21 18:29:58,899 | INFO     | [job] queue monitor thread has finished
[2025-11-21 10:30:40] 2025-11-21 18:29:59,810 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 10:30:40] 2025-11-21 18:30:24,570 | INFO     | PID=110847 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 10:30:40] 2025-11-21 18:30:24,571 | INFO     | .. there are 12 such processes running
[2025-11-21 10:30:40] 2025-11-21 18:30:24,571 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 10:30:40] 2025-11-21 18:30:24,571 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 10:30:40] 2025-11-21 18:30:24,571 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 10:30:40] 2025-11-21 18:30:33,939 | INFO     | [monitor] cgroup control has ended
[2025-11-21 10:30:40] 2025-11-21 18:30:35,206 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 126158980155200)>', '<ExcThread(monitor, started 126158205081344)>']
[2025-11-21 10:30:40] 2025-11-21 18:30:35,625 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 10:30:40] 2025-11-21 18:30:35,626 | INFO     | [monitor] control thread has ended
[2025-11-21 10:30:40] 2025-11-21 18:30:40,231 | INFO     | all workflow threads have been joined
[2025-11-21 10:30:40] 2025-11-21 18:30:40,232 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 10:30:40] 2025-11-21 18:30:40,232 | INFO     | traces error code: 0
[2025-11-21 10:30:40] 2025-11-21 18:30:40,232 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 10:30:40] 2025-11-21 18:30:40,312 [wrapper] ==== pilot stdout END ====
[2025-11-21 10:30:40] 2025-11-21 18:30:40,313 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 10:30:40] 2025-11-21 18:30:40,315 [wrapper] pilotpid: 110847
[2025-11-21 10:30:40] 2025-11-21 18:30:40,316 [wrapper] Pilot exit status: 0
[2025-11-21 10:30:40] 2025-11-21 18:30:40,334 [wrapper] pandaids: 6893876506
[2025-11-21 10:30:40] 2025-11-21 18:30:40,371 [wrapper] cleanup supervisor_pilot 1042882 110848
[2025-11-21 10:30:40] 2025-11-21 18:30:40,374 [wrapper] Test setup, not cleaning
[2025-11-21 10:30:40] 2025-11-21 18:30:40,375 [wrapper] apfmon messages muted
[2025-11-21 10:30:40] 2025-11-21 18:30:40,377 [wrapper] ==== wrapper stdout END ====
[2025-11-21 10:30:40] 2025-11-21 18:30:40,379 [wrapper] ==== wrapper stderr END ====
[2025-11-21 10:30:40]  *** Error codes and diagnostics ***
[2025-11-21 10:30:40]     "exeErrorCode": 0,
[2025-11-21 10:30:40]     "exeErrorDiag": "",
[2025-11-21 10:30:40]     "pilotErrorCode": 0,
[2025-11-21 10:30:40]     "pilotErrorDiag": "",
[2025-11-21 10:30:40]  *** Listing of results directory ***
[2025-11-21 10:30:40] total 1328172
[2025-11-21 10:30:40] -rw-r--r-- 1 root root    576529 Nov 20 09:01 pilot3.tar.gz
[2025-11-21 10:30:40] -rwx------ 1 4871 1028     36292 Nov 20 09:17 runpilot2-wrapper.sh
[2025-11-21 10:30:40] -rw-r--r-- 1 root root      5112 Nov 20 09:17 queuedata.json
[2025-11-21 10:30:40] -rw-r--r-- 1 root root       100 Nov 20 21:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 10:30:40] -rwxr-xr-x 1 root root      7986 Nov 20 21:04 run_atlas
[2025-11-21 10:30:40] -rw-r--r-- 1 root root       105 Nov 20 21:04 job.xml
[2025-11-21 10:30:40] -rw-r--r-- 2 root root     15847 Nov 20 21:04 start_atlas.sh
[2025-11-21 10:30:40] drwxrwx--x 2 root root      4096 Nov 20 21:04 shared
[2025-11-21 10:30:40] -rw-r--r-- 2 root root    590095 Nov 20 21:04 input.tar.gz
[2025-11-21 10:30:40] -rw-r--r-- 2 root root 412117616 Nov 20 21:04 EVNT.47493127._000759.pool.root.1
[2025-11-21 10:30:40] -rw-r--r-- 1 root root         0 Nov 20 21:04 boinc_lockfile
[2025-11-21 10:30:40] -rw-r--r-- 1 root root      2785 Nov 20 21:04 pandaJob.out
[2025-11-21 10:30:40] -rw------- 1 root root    989817 Nov 20 21:04 agis_schedconf.cvmfs.json
[2025-11-21 10:30:40] drwxr-xr-x 5  320  320      4096 Nov 20 21:04 pilot3
[2025-11-21 10:30:40] -rw-r--r-- 1 root root     13016 Nov 20 21:44 init_data.xml
[2025-11-21 10:30:40] -rw-r--r-- 1 root root       533 Nov 21 10:23 boinc_task_state.xml
[2025-11-21 10:30:40] -rw------- 1 root root 926197097 Nov 21 10:29 HITS.47523449._007582.pool.root.1
[2025-11-21 10:30:40] -rw------- 1 root root      1044 Nov 21 10:29 memory_monitor_summary.json
[2025-11-21 10:30:40] -rw------- 1 root root        95 Nov 21 10:29 pilot_heartbeat.json
[2025-11-21 10:30:40] -rw------- 1 root root   1526164 Nov 21 10:29 agis_ddmendpoints.agis.ALL.json
[2025-11-21 10:30:40] -rw------- 1 root root   1994866 Nov 21 10:29 log.47523449._007582.job.log.tgz.1
[2025-11-21 10:30:40] -rw------- 1 root root      8574 Nov 21 10:29 heartbeat.json
[2025-11-21 10:30:40] -rw-r--r-- 1 root root        29 Nov 21 10:30 wrapper_checkpoint.txt
[2025-11-21 10:30:40] -rw-r--r-- 1 root root      8192 Nov 21 10:30 boinc_mmap_file
[2025-11-21 10:30:40] -rw------- 1 root root      4838 Nov 21 10:30 pilotlog.txt
[2025-11-21 10:30:40] -rw------- 1 root root   6909003 Nov 21 10:30 log.47523449._007582.job.log.1
[2025-11-21 10:30:40] -rw------- 1 root root       353 Nov 21 10:30 output.list
[2025-11-21 10:30:40] -rw-r--r-- 1 root root       620 Nov 21 10:30 runtime_log
[2025-11-21 10:30:40] -rw------- 1 root root   8919040 Nov 21 10:30 result.tar.gz
[2025-11-21 10:30:40] -rw-r--r-- 1 root root      9019 Nov 21 10:30 runtime_log.err
[2025-11-21 10:30:40] -rw------- 1 root root       658 Nov 21 10:30 LuYNDmgSNg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwLIKDmlig2Qm.diag
[2025-11-21 10:30:40] -rw-r--r-- 1 root root     21401 Nov 21 10:30 stderr.txt
[2025-11-21 10:30:40] HITS file was successfully produced:
[2025-11-21 10:30:40] -rw------- 1 root root 926197097 Nov 21 10:29 shared/HITS.pool.root.1
[2025-11-21 10:30:40]  *** Contents of shared directory: ***
[2025-11-21 10:30:40] total 1316264
[2025-11-21 10:30:40] -rw-r--r-- 2 root root     15847 Nov 20 21:04 start_atlas.sh
[2025-11-21 10:30:40] -rw-r--r-- 2 root root    590095 Nov 20 21:04 input.tar.gz
[2025-11-21 10:30:40] -rw-r--r-- 2 root root 412117616 Nov 20 21:04 ATLAS.root_0
[2025-11-21 10:30:40] -rw------- 1 root root 926197097 Nov 21 10:29 HITS.pool.root.1
[2025-11-21 10:30:40] -rw------- 1 root root   8919040 Nov 21 10:30 result.tar.gz
10:30:42 (107006): run_atlas exited; CPU time 133412.594961
10:30:42 (107006): called boinc_finish(0)

</stderr_txt>
]]>

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