Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:38:08 (262572): wrapper (7.7.26015): starting
05:38:08 (262572): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 05:38:08] Arguments: --nthreads 3
[2025-11-21 05:38:08] Threads: 3
[2025-11-21 05:38:08] Checking for CVMFS
[2025-11-21 05:38:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 05:38:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 05:38:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 05:38:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 05:38:09] 2.9.2.0 16720 945 68884 153108 0 88 34460532 36864001 0 130560 0 13342885 99.999 21843 930 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 05:38:09] CVMFS is ok
[2025-11-21 05:38:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 05:38:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 05:38:09] Further information can be found at the LHC@home message board.
[2025-11-21 05:38:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 05:38:09] Checking for apptainer binary...
[2025-11-21 05:38:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 05:38:09] Running /usr/bin/apptainer --version
[2025-11-21 05:38:09] apptainer version 1.4.1-1.1
[2025-11-21 05:38:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 05:38:09] thA335
[2025-11-21 05:38:09] apptainer works
[2025-11-21 05:38:09] Set ATHENA_PROC_NUMBER=3
[2025-11-21 05:38:09] Set ATHENA_CORE_NUMBER=3
[2025-11-21 05:38:09] Starting ATLAS job with PandaID=6893876419
[2025-11-21 05:38:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 05:42:25]  *** The last 200 lines of the pilot log: ***
[2025-11-21 05:42:25] 2025-11-21 04:41:29,945 | INFO     | 
[2025-11-21 05:42:25] 2025-11-21 04:41:29,945 | INFO     | architecture information:
[2025-11-21 05:42:25] 2025-11-21 04:41:29,945 | INFO     | executing command: cat /etc/os-release
[2025-11-21 05:42:25] 2025-11-21 04:41:29,955 | INFO     | cat /etc/os-release:
[2025-11-21 05:42:25] NAME="CentOS Linux"
[2025-11-21 05:42:25] VERSION="7 (Core)"
[2025-11-21 05:42:25] ID="centos"
[2025-11-21 05:42:25] ID_LIKE="rhel fedora"
[2025-11-21 05:42:25] VERSION_ID="7"
[2025-11-21 05:42:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 05:42:25] ANSI_COLOR="0;31"
[2025-11-21 05:42:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 05:42:25] HOME_URL="https://www.centos.org/"
[2025-11-21 05:42:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 05:42:25] 
[2025-11-21 05:42:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 05:42:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 05:42:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 05:42:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 05:42:25] 
[2025-11-21 05:42:25] 2025-11-21 04:41:29,955 | INFO     | ***************************************
[2025-11-21 05:42:25] 2025-11-21 04:41:30,458 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-21 05:42:25] 2025-11-21 04:41:30,473 | INFO     | sufficient remaining disk space (827177566208 B)
[2025-11-21 05:42:25] 2025-11-21 04:41:30,473 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 05:42:25] 2025-11-21 04:41:30,473 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 05:42:25] 2025-11-21 04:41:30,473 | INFO     | update_server=False
[2025-11-21 05:42:25] 2025-11-21 04:41:30,473 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 05:42:25] 2025-11-21 04:41:30,709 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 05:42:25] 2025-11-21 04:41:30,710 | INFO     | aborting loop
[2025-11-21 05:42:25] 2025-11-21 04:41:31,294 | INFO     | all data control threads have been joined
[2025-11-21 05:42:25] 2025-11-21 04:41:31,479 | INFO     | [job] retrieve thread has finished
[2025-11-21 05:42:25] 2025-11-21 04:41:31,504 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 05:42:25] 2025-11-21 04:41:31,715 | INFO     | [job] job monitor thread has finished
[2025-11-21 05:42:25] 2025-11-21 04:41:31,721 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 05:42:25] 2025-11-21 04:41:31,886 | INFO     | all payload control threads have been joined
[2025-11-21 05:42:25] 2025-11-21 04:41:31,926 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 05:42:25] 2025-11-21 04:41:32,057 | INFO     | all job control threads have been joined
[2025-11-21 05:42:25] 2025-11-21 04:41:32,121 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 05:42:25] 2025-11-21 04:41:32,300 | INFO     | [data] control thread has finished
[2025-11-21 05:42:25] 2025-11-21 04:41:32,346 | INFO     | [payload] validate_post thread has finished
[2025-11-21 05:42:25] 2025-11-21 04:41:32,471 | INFO     | [data] copytool_in thread has finished
[2025-11-21 05:42:25] 2025-11-21 04:41:32,686 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 05:42:25] 2025-11-21 04:41:32,870 | INFO     | [job] validate thread has finished
[2025-11-21 05:42:25] 2025-11-21 04:41:32,892 | INFO     | [payload] control thread has finished
[2025-11-21 05:42:25] 2025-11-21 04:41:32,920 | INFO     | [payload] failed_post thread has finished
[2025-11-21 05:42:25] 2025-11-21 04:41:32,973 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 05:42:25] 2025-11-21 04:41:33,063 | INFO     | [job] control thread has finished
[2025-11-21 05:42:25] 2025-11-21 04:41:33,399 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 05:42:25] 2025-11-21 04:41:33,932 | INFO     | [data] copytool_out thread has finished
[2025-11-21 05:42:25] 2025-11-21 04:41:34,405 | INFO     | [job] queue monitor thread has finished
[2025-11-21 05:42:25] 2025-11-21 04:41:36,128 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 05:42:25] 2025-11-21 04:41:59,973 | INFO     | PID=266305 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 05:42:25] 2025-11-21 04:41:59,973 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 05:42:25] 2025-11-21 04:41:59,973 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 05:42:25] 2025-11-21 04:41:59,973 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 05:42:25] 2025-11-21 04:42:19,063 | INFO     | [monitor] cgroup control has ended
[2025-11-21 05:42:25] 2025-11-21 04:42:20,069 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140232356173632)>', '<ExcThread(monitor, started 140231848208128)>']
[2025-11-21 05:42:25] 2025-11-21 04:42:20,075 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 05:42:25] 2025-11-21 04:42:20,075 | INFO     | [monitor] control thread has ended
[2025-11-21 05:42:25] 2025-11-21 04:42:25,095 | INFO     | all workflow threads have been joined
[2025-11-21 05:42:25] 2025-11-21 04:42:25,095 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 05:42:25] 2025-11-21 04:42:25,096 | INFO     | traces error code: 0
[2025-11-21 05:42:25] 2025-11-21 04:42:25,096 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 05:42:25] 2025-11-21 04:42:25,146 [wrapper] ==== pilot stdout END ====
[2025-11-21 05:42:25] 2025-11-21 04:42:25,149 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 05:42:25] 2025-11-21 04:42:25,152 [wrapper] pilotpid: 266305
[2025-11-21 05:42:25] 2025-11-21 04:42:25,155 [wrapper] Pilot exit status: 0
[2025-11-21 05:42:25] 2025-11-21 04:42:25,162 [wrapper] pandaids: 6893876419
[2025-11-21 05:42:25] 2025-11-21 04:42:25,178 [wrapper] cleanup supervisor_pilot  266311 266306
[2025-11-21 05:42:25] 2025-11-21 04:42:25,181 [wrapper] Test setup, not cleaning
[2025-11-21 05:42:25] 2025-11-21 04:42:25,183 [wrapper] apfmon messages muted
[2025-11-21 05:42:25] 2025-11-21 04:42:25,186 [wrapper] ==== wrapper stdout END ====
[2025-11-21 05:42:25] 2025-11-21 04:42:25,189 [wrapper] ==== wrapper stderr END ====
[2025-11-21 05:42:25]  *** Error codes and diagnostics ***
[2025-11-21 05:42:25]     "exeErrorCode": 65,
[2025-11-21 05:42:25]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 05:42:25]     "pilotErrorCode": 1305,
[2025-11-21 05:42:25]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 05:42:25]  *** Listing of results directory ***
[2025-11-21 05:42:25] total 405032
[2025-11-21 05:42:25] -rw-r--r-- 1 boinc boinc    576529 Nov 20 18:01 pilot3.tar.gz
[2025-11-21 05:42:25] -rw-r--r-- 1 boinc boinc      5112 Nov 20 18:03 queuedata.json
[2025-11-21 05:42:25] -rwx------ 1 boinc boinc     36292 Nov 20 18:05 runpilot2-wrapper.sh
[2025-11-21 05:42:25] -rw-r--r-- 1 boinc boinc       100 Nov 21 05:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 05:42:25] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 05:38 run_atlas
[2025-11-21 05:42:25] -rw-r--r-- 1 boinc boinc       105 Nov 21 05:38 job.xml
[2025-11-21 05:42:25] -rw-r--r-- 2 boinc boinc 410554398 Nov 21 05:38 EVNT.47493127._000755.pool.root.1
[2025-11-21 05:42:25] -rw-r--r-- 2 boinc boinc    590097 Nov 21 05:38 input.tar.gz
[2025-11-21 05:42:25] -rw-r--r-- 2 boinc boinc     15847 Nov 21 05:38 start_atlas.sh
[2025-11-21 05:42:25] drwxrwx--x 2 boinc boinc      4096 Nov 21 05:38 shared
[2025-11-21 05:42:25] -rw-r--r-- 1 boinc boinc         0 Nov 21 05:38 boinc_setup_complete
[2025-11-21 05:42:25] -rw-r--r-- 1 boinc boinc      6194 Nov 21 05:38 init_data.xml
[2025-11-21 05:42:25] -rw-r--r-- 1 boinc boinc         0 Nov 21 05:38 boinc_lockfile
[2025-11-21 05:42:25] -rw-r--r-- 1 boinc boinc      2784 Nov 21 05:38 pandaJob.out
[2025-11-21 05:42:25] -rw------- 1 boinc boinc    989817 Nov 21 05:38 agis_schedconf.cvmfs.json
[2025-11-21 05:42:25] -rw------- 1 boinc boinc   1526164 Nov 21 05:38 agis_ddmendpoints.agis.ALL.json
[2025-11-21 05:42:25] drwx------ 5 boinc boinc      4096 Nov 21 05:38 pilot3
[2025-11-21 05:42:25] -rw-r--r-- 1 boinc boinc       522 Nov 21 05:39 boinc_task_state.xml
[2025-11-21 05:42:25] -rw------- 1 boinc boinc       970 Nov 21 05:39 memory_monitor_summary.json
[2025-11-21 05:42:25] -rw------- 1 boinc boinc     55574 Nov 21 05:39 log.47523449._007546.job.log.tgz.1
[2025-11-21 05:42:25] -rw------- 1 boinc boinc        95 Nov 21 05:41 pilot_heartbeat.json
[2025-11-21 05:42:25] -rw------- 1 boinc boinc      8387 Nov 21 05:41 heartbeat.json
[2025-11-21 05:42:25] -rw-r--r-- 1 boinc boinc      8192 Nov 21 05:42 boinc_mmap_file
[2025-11-21 05:42:25] -rw-r--r-- 1 boinc boinc        22 Nov 21 05:42 wrapper_checkpoint.txt
[2025-11-21 05:42:25] -rw------- 1 boinc boinc      4751 Nov 21 05:42 pilotlog.txt
[2025-11-21 05:42:25] -rw------- 1 boinc boinc     91555 Nov 21 05:42 log.47523449._007546.job.log.1
[2025-11-21 05:42:25] -rw------- 1 boinc boinc       186 Nov 21 05:42 output.list
[2025-11-21 05:42:25] -rw-r--r-- 1 boinc boinc       620 Nov 21 05:42 runtime_log
[2025-11-21 05:42:25] -rw------- 1 boinc boinc    163840 Nov 21 05:42 result.tar.gz
[2025-11-21 05:42:25] -rw-r--r-- 1 boinc boinc      8744 Nov 21 05:42 runtime_log.err
[2025-11-21 05:42:25] -rw------- 1 boinc boinc       649 Nov 21 05:42 mHqNDmlGNg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVLIKDmd0305n.diag
[2025-11-21 05:42:25] -rw-r--r-- 1 boinc boinc      9398 Nov 21 05:42 stderr.txt
[2025-11-21 05:42:25] No HITS result produced
[2025-11-21 05:42:25]  *** Contents of shared directory: ***
[2025-11-21 05:42:25] total 401696
[2025-11-21 05:42:25] -rw-r--r-- 2 boinc boinc 410554398 Nov 21 05:38 ATLAS.root_0
[2025-11-21 05:42:25] -rw-r--r-- 2 boinc boinc    590097 Nov 21 05:38 input.tar.gz
[2025-11-21 05:42:25] -rw-r--r-- 2 boinc boinc     15847 Nov 21 05:38 start_atlas.sh
[2025-11-21 05:42:25] -rw------- 1 boinc boinc    163840 Nov 21 05:42 result.tar.gz
05:42:26 (262572): run_atlas exited; CPU time 30.160014
05:42:26 (262572): called boinc_finish(0)

</stderr_txt>
]]>

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